RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 CDH24Q86UP0 819 aa6.37□□□□□ -1.39
VPS13A-210ENST00000471439 GOLM1Q8NBJ4 401 aa6.37□□□□□ -1.39
VPS13A-210ENST00000471439 TMEM87BQ96K49 555 aa6.37□□□□□ -1.39
VPS13A-210ENST00000471439 SLC26A8Q96RN1 970 aa6.37□□□□□ -1.39
VPS13A-210ENST00000471439 IGF2BP3O00425 579 aaKnown RBP eCLIP6.36□□□□□ -1.39
VPS13A-210ENST00000471439 HSPA1AP0DMV8 641 aaKnown RBP6.36□□□□□ -1.39
VPS13A-210ENST00000471439 HSPA1BP0DMV9 641 aaKnown RBP6.36□□□□□ -1.39
VPS13A-210ENST00000471439 RLBP1P12271 317 aa6.36□□□□□ -1.39
VPS13A-210ENST00000471439 FUT4P22083 530 aa6.36□□□□□ -1.39
VPS13A-210ENST00000471439 NBPF8Q3BBV2 869 aa6.36□□□□□ -1.39
VPS13A-210ENST00000471439 CDKAL1Q5VV42 579 aa6.36□□□□□ -1.39
VPS13A-210ENST00000471439 MRPL41Q8IXM3 137 aaKnown RBP6.36□□□□□ -1.39
VPS13A-210ENST00000471439 STK11IPQ8N1F8 1099 aa6.36□□□□□ -1.39
VPS13A-210ENST00000471439 ZNF526Q8TF50 670 aaPredicted RBP6.36□□□□□ -1.39
VPS13A-210ENST00000471439 GATAD2BQ8WXI9 593 aa6.36□□□□□ -1.39
VPS13A-210ENST00000471439 MISP3Q96FF7 219 aa6.36□□□□□ -1.39
VPS13A-210ENST00000471439 MBNL3Q9NUK0 354 aaKnown RBP6.36□□□□□ -1.39
VPS13A-210ENST00000471439 MAPK8IP1Q9UQF2 711 aa6.36□□□□□ -1.39
VPS13A-210ENST00000471439 SAMD9LQ8IVG5 1584 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 SLIT1O75093 1534 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 PITPNM2Q9BZ72 1349 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 TMEM265A0A087WTH1 108 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 GNAT3A8MTJ3 354 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 BPNT1O95861 308 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 CBX7O95931 251 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 RNASE1P07998 156 aaKnown RBP6.35□□□□□ -1.39
VPS13A-210ENST00000471439 ATF3P18847 181 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 PLCG1P19174 1290 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 CRKP46108 304 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 HNRNPMP52272 730 aaKnown RBP eCLIP6.35□□□□□ -1.39
VPS13A-210ENST00000471439 FBXL19Q6PCT2 694 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 RELL1Q8IUW5 271 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 MFSD4AQ8N468 514 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 MFSD2AQ8NA29 543 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 AGBL5Q8NDL9 886 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 DNAJB8Q8NHS0 232 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 HSPA12BQ96MM6 686 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 RSRP1Q9BUV0 290 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 KLHL3Q9UH77 587 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 VAV3Q9UKW4 847 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 CAPN6Q9Y6Q1 641 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 CASZ1Q86V15 1759 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 CDC42BPBQ9Y5S2 1711 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 SAMD9Q5K651 1589 aa6.35□□□□□ -1.39
VPS13A-210ENST00000471439 ARHGAP35Q9NRY4 1499 aa6.34□□□□□ -1.39
VPS13A-210ENST00000471439 USP19O94966 1318 aa6.34□□□□□ -1.39
VPS13A-210ENST00000471439 WASH4PA8MWX3 477 aa6.34□□□□□ -1.39
VPS13A-210ENST00000471439 H3BS24 57 aa6.34□□□□□ -1.39
VPS13A-210ENST00000471439 ZNF865P0CJ78 1059 aaPredicted RBP6.34□□□□□ -1.39
VPS13A-210ENST00000471439 RGS19P49795 217 aa6.34□□□□□ -1.39
VPS13A-210ENST00000471439 HDLBPQ00341 1268 aaKnown RBP6.34□□□□□ -1.39
VPS13A-210ENST00000471439 IKZF1Q13422 519 aa6.34□□□□□ -1.39
VPS13A-210ENST00000471439 SFRP5Q5T4F7 317 aa6.34□□□□□ -1.39
VPS13A-210ENST00000471439 C9orf131Q5VYM1 1079 aa6.34□□□□□ -1.39
VPS13A-210ENST00000471439 MCATQ8IVS2 390 aaKnown RBP6.34□□□□□ -1.39
VPS13A-210ENST00000471439 TMEM87AQ8NBN3 555 aa6.34□□□□□ -1.39
VPS13A-210ENST00000471439 LRRN4CLQ8ND94 238 aa6.34□□□□□ -1.39
VPS13A-210ENST00000471439 PPP1R13LQ8WUF5 828 aa6.34□□□□□ -1.39
VPS13A-210ENST00000471439 ATP13A1Q9HD20 1204 aa6.34□□□□□ -1.39
VPS13A-210ENST00000471439 SEMA3GQ9NS98 782 aa6.34□□□□□ -1.39
VPS13A-210ENST00000471439 ADAMTS1Q9UHI8 967 aa6.34□□□□□ -1.39
VPS13A-210ENST00000471439 TACC3Q9Y6A5 838 aa6.34□□□□□ -1.39
VPS13A-210ENST00000471439 CHD2O14647 1828 aaKnown RBP6.34□□□□□ -1.4
VPS13A-210ENST00000471439 TET3O43151 1660 aa6.33□□□□□ -1.4
VPS13A-210ENST00000471439 ZBTB7AO95365 584 aa6.33□□□□□ -1.4
VPS13A-210ENST00000471439 PAPLNO95428 1278 aa6.33□□□□□ -1.4
VPS13A-210ENST00000471439 TCF3P15923 654 aa6.33□□□□□ -1.4
VPS13A-210ENST00000471439 FANCCQ00597 558 aa6.33□□□□□ -1.4
VPS13A-210ENST00000471439 PDE4BQ07343 736 aa6.33□□□□□ -1.4
VPS13A-210ENST00000471439 TNK2Q07912 1038 aa6.33□□□□□ -1.4
VPS13A-210ENST00000471439 ANGEL2Q5VTE6 544 aaKnown RBP6.33□□□□□ -1.4
VPS13A-210ENST00000471439 REC114Q7Z4M0 266 aa6.33□□□□□ -1.4
VPS13A-210ENST00000471439 CCDC84Q86UT8 332 aaPredicted RBP6.33□□□□□ -1.4
VPS13A-210ENST00000471439 UNC5CLQ8IV45 518 aa6.33□□□□□ -1.4
VPS13A-210ENST00000471439 FAM13CQ8NE31 585 aa6.33□□□□□ -1.4
VPS13A-210ENST00000471439 Q96M66 194 aa6.33□□□□□ -1.4
VPS13A-210ENST00000471439 PDGFDQ9GZP0 370 aaPredicted RBP6.33□□□□□ -1.4
VPS13A-210ENST00000471439 C19orf44Q9H6X5 657 aa6.33□□□□□ -1.4
VPS13A-210ENST00000471439 RC3H2Q9HBD1 1191 aaKnown RBP6.33□□□□□ -1.4
VPS13A-210ENST00000471439 REV1Q9UBZ9 1251 aa6.33□□□□□ -1.4
VPS13A-210ENST00000471439 GGT7Q9UJ14 662 aa6.33□□□□□ -1.4
VPS13A-210ENST00000471439 ST14Q9Y5Y6 855 aa6.33□□□□□ -1.4
VPS13A-210ENST00000471439 EID1Q9Y6B2 187 aa6.33□□□□□ -1.4
VPS13A-210ENST00000471439 CFAP65Q6ZU64 1925 aaKnown RBP6.33□□□□□ -1.4
VPS13A-210ENST00000471439 FAM155AB1AL88 458 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-210ENST00000471439 CHURC1-FNTBB4DL54 471 aa6.32□□□□□ -1.4
VPS13A-210ENST00000471439 HTR3BO95264 441 aa6.32□□□□□ -1.4
VPS13A-210ENST00000471439 ITGB5P18084 799 aa6.32□□□□□ -1.4
VPS13A-210ENST00000471439 RANGAP1P46060 587 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-210ENST00000471439 CLCN7P51798 805 aa6.32□□□□□ -1.4
VPS13A-210ENST00000471439 SLC6A19Q695T7 634 aa6.32□□□□□ -1.4
VPS13A-210ENST00000471439 FAM196AQ6ZSG2 479 aa6.32□□□□□ -1.4
VPS13A-210ENST00000471439 ADAM30Q9UKF2 790 aa6.32□□□□□ -1.4
VPS13A-210ENST00000471439 PARD3Q8TEW0 1356 aa6.31□□□□□ -1.4
VPS13A-210ENST00000471439 ADGRB2O60241 1585 aa6.31□□□□□ -1.4
VPS13A-210ENST00000471439 GPATCH8Q9UKJ3 1502 aaKnown RBP6.31□□□□□ -1.4
VPS13A-210ENST00000471439 PAX4O43316 350 aa6.31□□□□□ -1.4
VPS13A-210ENST00000471439 LRRN2O75325 713 aa6.31□□□□□ -1.4
VPS13A-210ENST00000471439 EIF4A3P38919 411 aaKnown RBP6.31□□□□□ -1.4
VPS13A-210ENST00000471439 ZP2Q05996 745 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms