RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 FAM47AQ5JRC9 791 aa19.7■□□□□ 0.74
CCDC28B-204ENST00000469003 GJC2Q5T442 439 aaPredicted RBP19.7■□□□□ 0.74
CCDC28B-204ENST00000469003 ANO1Q5XXA6 986 aa19.7■□□□□ 0.74
CCDC28B-204ENST00000469003 SNRNP48Q6IEG0 339 aaKnown RBP19.7■□□□□ 0.74
CCDC28B-204ENST00000469003 CCDC129Q6ZRS4 1044 aa19.7■□□□□ 0.74
CCDC28B-204ENST00000469003 LRRC47Q8N1G4 583 aaKnown RBP19.7■□□□□ 0.74
CCDC28B-204ENST00000469003 TINF2Q9BSI4 451 aa19.7■□□□□ 0.74
CCDC28B-204ENST00000469003 FEM1BQ9UK73 627 aa19.7■□□□□ 0.74
CCDC28B-204ENST00000469003 KBTBD13C9JR72 458 aa19.69■□□□□ 0.74
CCDC28B-204ENST00000469003 SLFN13Q68D06 897 aa19.69■□□□□ 0.74
CCDC28B-204ENST00000469003 KIFC2Q96AC6 838 aa19.69■□□□□ 0.74
CCDC28B-204ENST00000469003 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.69■□□□□ 0.74
CCDC28B-204ENST00000469003 RIPK3Q9Y572 518 aa19.69■□□□□ 0.74
CCDC28B-204ENST00000469003 CTDP1Q9Y5B0 961 aaPredicted RBP19.69■□□□□ 0.74
CCDC28B-204ENST00000469003 ATN1P54259 1190 aaPredicted RBP19.68■□□□□ 0.74
CCDC28B-204ENST00000469003 PPP4R3BQ5MIZ7 849 aa19.68■□□□□ 0.74
CCDC28B-204ENST00000469003 TICAM2Q86XR7 235 aa19.68■□□□□ 0.74
CCDC28B-204ENST00000469003 DEFB123Q8N688 67 aa19.68■□□□□ 0.74
CCDC28B-204ENST00000469003 SLC38A10Q9HBR0 1119 aa19.68■□□□□ 0.74
CCDC28B-204ENST00000469003 HELLSQ9NRZ9 838 aa19.68■□□□□ 0.74
CCDC28B-204ENST00000469003 SMCHD1A6NHR9 2005 aa19.68■□□□□ 0.74
CCDC28B-204ENST00000469003 BMP3P12645 472 aa19.67■□□□□ 0.74
CCDC28B-204ENST00000469003 RTP1P59025 263 aa19.67■□□□□ 0.74
CCDC28B-204ENST00000469003 CTDSPL2Q05D32 466 aa19.67■□□□□ 0.74
CCDC28B-204ENST00000469003 LRRC41Q15345 812 aa19.67■□□□□ 0.74
CCDC28B-204ENST00000469003 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.67■□□□□ 0.74
CCDC28B-204ENST00000469003 CPXCR1Q8N123 301 aa19.67■□□□□ 0.74
CCDC28B-204ENST00000469003 MSL3Q8N5Y2 521 aaKnown RBP19.67■□□□□ 0.74
CCDC28B-204ENST00000469003 UBE2OQ9C0C9 1292 aaKnown RBP19.67■□□□□ 0.74
CCDC28B-204ENST00000469003 ANAPC4Q9UJX5 808 aa19.67■□□□□ 0.74
CCDC28B-204ENST00000469003 DNAJC25-GNG10A0A024R161 153 aa19.66■□□□□ 0.74
CCDC28B-204ENST00000469003 FDX1P10109 184 aa19.66■□□□□ 0.74
CCDC28B-204ENST00000469003 OAZ1P54368 228 aa19.66■□□□□ 0.74
CCDC28B-204ENST00000469003 ALX1Q15699 326 aa19.66■□□□□ 0.74
CCDC28B-204ENST00000469003 VPS53Q5VIR6 699 aa19.66■□□□□ 0.74
CCDC28B-204ENST00000469003 TDHQ8IZJ6 230 aa19.66■□□□□ 0.74
CCDC28B-204ENST00000469003 DDX11Q96FC9 970 aa19.66■□□□□ 0.74
CCDC28B-204ENST00000469003 YTHDC1Q96MU7 727 aaKnown RBP19.66■□□□□ 0.74
CCDC28B-204ENST00000469003 RAVER2Q9HCJ3 691 aaKnown RBP19.66■□□□□ 0.74
CCDC28B-204ENST00000469003 TSPY2A6NKD2 308 aa19.65■□□□□ 0.74
CCDC28B-204ENST00000469003 MYCNP04198 464 aaPredicted RBP19.65■□□□□ 0.74
CCDC28B-204ENST00000469003 ZNF865P0CJ78 1059 aaPredicted RBP19.65■□□□□ 0.74
CCDC28B-204ENST00000469003 RARBP10826 455 aa19.65■□□□□ 0.74
CCDC28B-204ENST00000469003 TAL1P17542 331 aaPredicted RBP19.65■□□□□ 0.74
CCDC28B-204ENST00000469003 SLC4A3P48751 1232 aa19.65■□□□□ 0.74
CCDC28B-204ENST00000469003 GPR153Q6NV75 609 aa19.65■□□□□ 0.74
CCDC28B-204ENST00000469003 SLC39A5Q6ZMH5 540 aa19.65■□□□□ 0.74
CCDC28B-204ENST00000469003 GMCL1Q96IK5 515 aa19.65■□□□□ 0.74
CCDC28B-204ENST00000469003 LNPKQ9C0E8 428 aa19.65■□□□□ 0.74
CCDC28B-204ENST00000469003 XPNPEP3Q9NQH7 507 aa19.65■□□□□ 0.74
CCDC28B-204ENST00000469003 FBXO40Q9UH90 709 aa19.65■□□□□ 0.74
CCDC28B-204ENST00000469003 CNPY2Q9Y2B0 182 aa19.65■□□□□ 0.74
CCDC28B-204ENST00000469003 SYNGAP1Q96PV0 1343 aa19.65■□□□□ 0.74
CCDC28B-204ENST00000469003 TMEM232C9JQI7 657 aa19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 AKR1A1P14550 325 aa19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 STAT2P52630 851 aa19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 MDM2Q00987 491 aaPredicted RBP19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 SNX17Q15036 470 aa19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 LRIT3Q3SXY7 679 aa19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 MCMDC2Q4G0Z9 681 aa19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 MAMDC4Q6UXC1 1216 aa19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 ZNF467Q7Z7K2 595 aaPredicted RBP19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 FAM160B2Q86V87 743 aa19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 SMC5Q8IY18 1101 aa19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 CHST13Q8NET6 341 aa19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 CHURC1Q8WUH1 139 aa19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 FAM227BQ96M60 508 aa19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 RWDD1Q9H446 243 aaPredicted RBP19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 INCENPQ9NQS7 918 aa19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 IL17RBQ9NRM6 502 aa19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 ATP11BQ9Y2G3 1177 aa19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 TACC3Q9Y6A5 838 aa19.64■□□□□ 0.73
CCDC28B-204ENST00000469003 A0A0D9SFI3 127 aa19.63■□□□□ 0.73
CCDC28B-204ENST00000469003 ORC4O43929 436 aa19.63■□□□□ 0.73
CCDC28B-204ENST00000469003 PLA2G6O60733 806 aa19.63■□□□□ 0.73
CCDC28B-204ENST00000469003 ADCYAP1R1P41586 468 aa19.63■□□□□ 0.73
CCDC28B-204ENST00000469003 SLC1A4P43007 532 aa19.63■□□□□ 0.73
CCDC28B-204ENST00000469003 Q7L0L9 218 aa19.63■□□□□ 0.73
CCDC28B-204ENST00000469003 STAG1Q8WVM7 1258 aa19.63■□□□□ 0.73
CCDC28B-204ENST00000469003 LBHD1Q9BQE6 289 aaPredicted RBP19.63■□□□□ 0.73
CCDC28B-204ENST00000469003 PRKAG2Q9UGJ0 569 aa19.63■□□□□ 0.73
CCDC28B-204ENST00000469003 ISY1Q9ULR0 285 aaKnown RBP19.63■□□□□ 0.73
CCDC28B-204ENST00000469003 STX8Q9UNK0 236 aa19.63■□□□□ 0.73
CCDC28B-204ENST00000469003 PHF24Q9UPV7 400 aa19.63■□□□□ 0.73
CCDC28B-204ENST00000469003 UNC80Q8N2C7 3258 aa19.63■□□□□ 0.73
CCDC28B-204ENST00000469003 RANBP6O60518 1105 aaKnown RBP19.62■□□□□ 0.73
CCDC28B-204ENST00000469003 SNAI1O95863 264 aaPredicted RBP19.62■□□□□ 0.73
CCDC28B-204ENST00000469003 FGRP09769 529 aa19.62■□□□□ 0.73
CCDC28B-204ENST00000469003 MCCP23508 829 aa19.62■□□□□ 0.73
CCDC28B-204ENST00000469003 NOVP48745 357 aa19.62■□□□□ 0.73
CCDC28B-204ENST00000469003 C1orf53Q5VUE5 145 aa19.62■□□□□ 0.73
CCDC28B-204ENST00000469003 RNF180Q86T96 592 aa19.62■□□□□ 0.73
CCDC28B-204ENST00000469003 ANKRD35Q8N283 1001 aa19.62■□□□□ 0.73
CCDC28B-204ENST00000469003 STXBP5LQ9Y2K9 1186 aa19.62■□□□□ 0.73
CCDC28B-204ENST00000469003 LTBP2Q14767 1821 aa19.62■□□□□ 0.73
CCDC28B-204ENST00000469003 DNAH12Q6ZR08 3092 aa19.61■□□□□ 0.73
CCDC28B-204ENST00000469003 ZMYM6O95789 1325 aa19.61■□□□□ 0.73
CCDC28B-204ENST00000469003 TRIM6-TRIM34B2RNG4 842 aa19.61■□□□□ 0.73
CCDC28B-204ENST00000469003 NMT2O60551 498 aa19.61■□□□□ 0.73
CCDC28B-204ENST00000469003 PGK1P00558 417 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms