RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 PPARAQ07869 468 aa22.8■■□□□ 1.24
COL9A3-206ENST00000466532 LRRC41Q15345 812 aa22.8■■□□□ 1.24
COL9A3-206ENST00000466532 SLC39A5Q6ZMH5 540 aa22.8■■□□□ 1.24
COL9A3-206ENST00000466532 CPXCR1Q8N123 301 aa22.8■■□□□ 1.24
COL9A3-206ENST00000466532 NEDD1Q8NHV4 660 aa22.8■■□□□ 1.24
COL9A3-206ENST00000466532 KIFC2Q96AC6 838 aa22.8■■□□□ 1.24
COL9A3-206ENST00000466532 CRBNQ96SW2 442 aa22.8■■□□□ 1.24
COL9A3-206ENST00000466532 LBHD1Q9BQE6 289 aaPredicted RBP22.8■■□□□ 1.24
COL9A3-206ENST00000466532 PRKAG2Q9UGJ0 569 aa22.8■■□□□ 1.24
COL9A3-206ENST00000466532 SYNPO2Q9UMS6 1093 aa22.8■■□□□ 1.24
COL9A3-206ENST00000466532 RIPK3Q9Y572 518 aa22.8■■□□□ 1.24
COL9A3-206ENST00000466532 CTDP1Q9Y5B0 961 aaPredicted RBP22.8■■□□□ 1.24
COL9A3-206ENST00000466532 SALL3Q9BXA9 1300 aa22.8■■□□□ 1.24
COL9A3-206ENST00000466532 ZBED4O75132 1171 aa22.79■■□□□ 1.24
COL9A3-206ENST00000466532 RARBP10826 455 aa22.79■■□□□ 1.24
COL9A3-206ENST00000466532 ANKRD45Q5TZF3 282 aa22.79■■□□□ 1.24
COL9A3-206ENST00000466532 GMCL1P1Q8NEA9 526 aa22.79■■□□□ 1.24
COL9A3-206ENST00000466532 XPNPEP3Q9NQH7 507 aa22.79■■□□□ 1.24
COL9A3-206ENST00000466532 FEM1BQ9UK73 627 aa22.79■■□□□ 1.24
COL9A3-206ENST00000466532 ATP2A1O14983 1001 aa22.78■■□□□ 1.24
COL9A3-206ENST00000466532 TAL1P17542 331 aaPredicted RBP22.78■■□□□ 1.24
COL9A3-206ENST00000466532 ADCYAP1R1P41586 468 aa22.78■■□□□ 1.24
COL9A3-206ENST00000466532 TFAP4Q01664 338 aa22.78■■□□□ 1.24
COL9A3-206ENST00000466532 GPR153Q6NV75 609 aa22.78■■□□□ 1.24
COL9A3-206ENST00000466532 CCDC129Q6ZRS4 1044 aa22.78■■□□□ 1.24
COL9A3-206ENST00000466532 FERMT2Q96AC1 680 aa22.78■■□□□ 1.24
COL9A3-206ENST00000466532 DDX11Q96FC9 970 aa22.78■■□□□ 1.24
COL9A3-206ENST00000466532 SLFN13Q68D06 897 aa22.77■■□□□ 1.24
COL9A3-206ENST00000466532 SLC38A10Q9HBR0 1119 aa22.77■■□□□ 1.24
COL9A3-206ENST00000466532 RAVER2Q9HCJ3 691 aaKnown RBP22.77■■□□□ 1.24
COL9A3-206ENST00000466532 CNPY2Q9Y2B0 182 aa22.77■■□□□ 1.24
COL9A3-206ENST00000466532 ZNF865P0CJ78 1059 aaPredicted RBP22.76■■□□□ 1.23
COL9A3-206ENST00000466532 BMP3P12645 472 aa22.76■■□□□ 1.23
COL9A3-206ENST00000466532 AKR1A1P14550 325 aa22.76■■□□□ 1.23
COL9A3-206ENST00000466532 SNX17Q15036 470 aa22.76■■□□□ 1.23
COL9A3-206ENST00000466532 TRIM60Q495X7 471 aa22.76■■□□□ 1.23
COL9A3-206ENST00000466532 ISY1Q9ULR0 285 aaKnown RBP22.76■■□□□ 1.23
COL9A3-206ENST00000466532 DNAJC25-GNG10A0A024R161 153 aa22.75■■□□□ 1.23
COL9A3-206ENST00000466532 FOXP2O15409 715 aa22.75■■□□□ 1.23
COL9A3-206ENST00000466532 PGK1P00558 417 aa22.75■■□□□ 1.23
COL9A3-206ENST00000466532 CTDSPL2Q05D32 466 aa22.75■■□□□ 1.23
COL9A3-206ENST00000466532 RNF180Q86T96 592 aa22.75■■□□□ 1.23
COL9A3-206ENST00000466532 MSL3Q8N5Y2 521 aaKnown RBP22.75■■□□□ 1.23
COL9A3-206ENST00000466532 PRDM5Q9NQX1 630 aaPredicted RBP22.75■■□□□ 1.23
COL9A3-206ENST00000466532 SYNGAP1Q96PV0 1343 aa22.75■■□□□ 1.23
COL9A3-206ENST00000466532 OAZ1P54368 228 aa22.74■■□□□ 1.23
COL9A3-206ENST00000466532 DEFB123Q8N688 67 aa22.74■■□□□ 1.23
COL9A3-206ENST00000466532 LENG1Q96BZ8 264 aaPredicted RBP22.74■■□□□ 1.23
COL9A3-206ENST00000466532 EVI5LQ96CN4 794 aa22.74■■□□□ 1.23
COL9A3-206ENST00000466532 PHF24Q9UPV7 400 aa22.74■■□□□ 1.23
COL9A3-206ENST00000466532 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.74■■□□□ 1.23
COL9A3-206ENST00000466532 TSPY2A6NKD2 308 aa22.73■■□□□ 1.23
COL9A3-206ENST00000466532 TMEM232C9JQI7 657 aa22.73■■□□□ 1.23
COL9A3-206ENST00000466532 STAT2P52630 851 aa22.73■■□□□ 1.23
COL9A3-206ENST00000466532 HDAC1Q13547 482 aaPredicted RBP22.73■■□□□ 1.23
COL9A3-206ENST00000466532 MAMDC4Q6UXC1 1216 aa22.73■■□□□ 1.23
COL9A3-206ENST00000466532 Q7L0L9 218 aa22.73■■□□□ 1.23
COL9A3-206ENST00000466532 ANKRD35Q8N283 1001 aa22.73■■□□□ 1.23
COL9A3-206ENST00000466532 FBXO40Q9UH90 709 aa22.73■■□□□ 1.23
COL9A3-206ENST00000466532 SNAI1O95863 264 aaPredicted RBP22.72■■□□□ 1.23
COL9A3-206ENST00000466532 FDX1P10109 184 aa22.72■■□□□ 1.23
COL9A3-206ENST00000466532 SLC1A4P43007 532 aa22.72■■□□□ 1.23
COL9A3-206ENST00000466532 PDE1AP54750 535 aa22.72■■□□□ 1.23
COL9A3-206ENST00000466532 PPP4R3BQ5MIZ7 849 aa22.72■■□□□ 1.23
COL9A3-206ENST00000466532 VPS53Q5VIR6 699 aa22.72■■□□□ 1.23
COL9A3-206ENST00000466532 C1orf53Q5VUE5 145 aa22.72■■□□□ 1.23
COL9A3-206ENST00000466532 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.72■■□□□ 1.23
COL9A3-206ENST00000466532 ZNF467Q7Z7K2 595 aaPredicted RBP22.72■■□□□ 1.23
COL9A3-206ENST00000466532 CHST13Q8NET6 341 aa22.72■■□□□ 1.23
COL9A3-206ENST00000466532 CHMP4CQ96CF2 233 aa22.72■■□□□ 1.23
COL9A3-206ENST00000466532 GMCL1Q96IK5 515 aa22.72■■□□□ 1.23
COL9A3-206ENST00000466532 INCENPQ9NQS7 918 aa22.72■■□□□ 1.23
COL9A3-206ENST00000466532 ZHX1Q9UKY1 873 aaPredicted RBP22.72■■□□□ 1.23
COL9A3-206ENST00000466532 STX8Q9UNK0 236 aa22.72■■□□□ 1.23
COL9A3-206ENST00000466532 ADAMTS4O75173 837 aa22.71■■□□□ 1.23
COL9A3-206ENST00000466532 IKQ13123 557 aaPredicted RBP22.71■■□□□ 1.23
COL9A3-206ENST00000466532 FAM160B2Q86V87 743 aa22.71■■□□□ 1.23
COL9A3-206ENST00000466532 CHURC1Q8WUH1 139 aa22.71■■□□□ 1.23
COL9A3-206ENST00000466532 PDLIM7Q9NR12 457 aa22.71■■□□□ 1.23
COL9A3-206ENST00000466532 HELLSQ9NRZ9 838 aa22.71■■□□□ 1.23
COL9A3-206ENST00000466532 HOMER2Q9NSB8 354 aa22.71■■□□□ 1.23
COL9A3-206ENST00000466532 FAM184BQ9ULE4 1060 aa22.71■■□□□ 1.23
COL9A3-206ENST00000466532 LRRC37A2A6NM11 1700 aa22.71■■□□□ 1.23
COL9A3-206ENST00000466532 LCTP09848 1927 aa22.7■■□□□ 1.23
COL9A3-206ENST00000466532 COL6A3P12111 3177 aa22.7■■□□□ 1.22
COL9A3-206ENST00000466532 A0A1W2PQ45 241 aaPredicted RBP22.7■■□□□ 1.22
COL9A3-206ENST00000466532 A0A1W2PQY0 241 aa22.7■■□□□ 1.22
COL9A3-206ENST00000466532 MCCP23508 829 aa22.7■■□□□ 1.22
COL9A3-206ENST00000466532 TLE2Q04725 743 aa22.7■■□□□ 1.22
COL9A3-206ENST00000466532 STAG1Q8WVM7 1258 aa22.7■■□□□ 1.22
COL9A3-206ENST00000466532 IL17RBQ9NRM6 502 aa22.7■■□□□ 1.22
COL9A3-206ENST00000466532 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.7■■□□□ 1.22
COL9A3-206ENST00000466532 ANAPC4Q9UJX5 808 aa22.7■■□□□ 1.22
COL9A3-206ENST00000466532 SYNRGQ9UMZ2 1314 aa22.7■■□□□ 1.22
COL9A3-206ENST00000466532 RANBP6O60518 1105 aaKnown RBP22.69■■□□□ 1.22
COL9A3-206ENST00000466532 NMT2O60551 498 aa22.69■■□□□ 1.22
COL9A3-206ENST00000466532 SH3RF1Q7Z6J0 888 aa22.69■■□□□ 1.22
COL9A3-206ENST00000466532 BADQ92934 168 aa22.69■■□□□ 1.22
COL9A3-206ENST00000466532 FGD4Q96M96 766 aa22.69■■□□□ 1.22
COL9A3-206ENST00000466532 TACC3Q9Y6A5 838 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms