RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 SPDYE2BA6NHP3 402 aa20.85■□□□□ 0.93
COL9A3-205ENST00000466192 SPDYE6P0CI01 402 aa20.85■□□□□ 0.93
COL9A3-205ENST00000466192 ZNF75DP51815 510 aa20.85■□□□□ 0.93
COL9A3-205ENST00000466192 ATP2C1P98194 919 aaPredicted RBP20.85■□□□□ 0.93
COL9A3-205ENST00000466192 ATP2B2Q01814 1243 aa20.85■□□□□ 0.93
COL9A3-205ENST00000466192 SOGA3Q5TF21 947 aa20.85■□□□□ 0.93
COL9A3-205ENST00000466192 ISM2Q6H9L7 571 aa20.85■□□□□ 0.93
COL9A3-205ENST00000466192 FAM177A1Q8N128 213 aaPredicted RBP20.85■□□□□ 0.93
COL9A3-205ENST00000466192 CNNM3Q8NE01 707 aa20.85■□□□□ 0.93
COL9A3-205ENST00000466192 ZMYND12Q9H0C1 365 aa20.85■□□□□ 0.93
COL9A3-205ENST00000466192 SEC63Q9UGP8 760 aaKnown RBP20.85■□□□□ 0.93
COL9A3-205ENST00000466192 NAPAP54920 295 aa20.84■□□□□ 0.93
COL9A3-205ENST00000466192 ZNF543Q08ER8 600 aa20.84■□□□□ 0.93
COL9A3-205ENST00000466192 PNOCQ13519 176 aa20.84■□□□□ 0.93
COL9A3-205ENST00000466192 METTL16Q86W50 562 aaKnown RBP20.84■□□□□ 0.93
COL9A3-205ENST00000466192 MTFR1LQ9H019 292 aa20.84■□□□□ 0.93
COL9A3-205ENST00000466192 GPCPD1Q9NPB8 672 aa20.84■□□□□ 0.93
COL9A3-205ENST00000466192 ZNRF3Q9ULT6 936 aa20.84■□□□□ 0.93
COL9A3-205ENST00000466192 COL2A1P02458 1487 aaPredicted RBP20.84■□□□□ 0.93
COL9A3-205ENST00000466192 DRC7Q8IY82 874 aa20.83■□□□□ 0.93
COL9A3-205ENST00000466192 FERMT2Q96AC1 680 aa20.83■□□□□ 0.93
COL9A3-205ENST00000466192 TRIM34Q9BYJ4 488 aa20.83■□□□□ 0.93
COL9A3-205ENST00000466192 GOLGA6L6A8MZA4 724 aa20.83■□□□□ 0.92
COL9A3-205ENST00000466192 POLR2DO15514 142 aaKnown RBP20.83■□□□□ 0.92
COL9A3-205ENST00000466192 POLD1P28340 1107 aa20.83■□□□□ 0.92
COL9A3-205ENST00000466192 MCM7P33993 719 aa20.83■□□□□ 0.92
COL9A3-205ENST00000466192 NLRP12P59046 1061 aa20.83■□□□□ 0.92
COL9A3-205ENST00000466192 NIM1KQ8IY84 436 aa20.83■□□□□ 0.92
COL9A3-205ENST00000466192 TUBE1Q9UJT0 475 aa20.83■□□□□ 0.92
COL9A3-205ENST00000466192 ARFGEF1Q9Y6D6 1849 aa20.83■□□□□ 0.92
COL9A3-205ENST00000466192 CCDC194A0A1B0GVG4 234 aa20.82■□□□□ 0.92
COL9A3-205ENST00000466192 DALRD3Q5D0E6 543 aaKnown RBP20.82■□□□□ 0.92
COL9A3-205ENST00000466192 CCDC12Q8WUD4 166 aaPredicted RBP20.82■□□□□ 0.92
COL9A3-205ENST00000466192 CLRN2A0PK11 232 aa20.82■□□□□ 0.92
COL9A3-205ENST00000466192 EEF2P13639 858 aaKnown RBP20.82■□□□□ 0.92
COL9A3-205ENST00000466192 EPSTI1Q96J88 318 aa20.82■□□□□ 0.92
COL9A3-205ENST00000466192 HDAC9Q9UKV0 1011 aa20.82■□□□□ 0.92
COL9A3-205ENST00000466192 SMCO2A6NFE2 343 aa20.81■□□□□ 0.92
COL9A3-205ENST00000466192 TCP10L2B9ZVM9 353 aa20.81■□□□□ 0.92
COL9A3-205ENST00000466192 FOXN1O15353 648 aa20.81■□□□□ 0.92
COL9A3-205ENST00000466192 MDM2Q00987 491 aaPredicted RBP20.81■□□□□ 0.92
COL9A3-205ENST00000466192 SEPT2Q15019 361 aa20.81■□□□□ 0.92
COL9A3-205ENST00000466192 DLGAP5Q15398 846 aa20.81■□□□□ 0.92
COL9A3-205ENST00000466192 PPP4R3BQ5MIZ7 849 aa20.81■□□□□ 0.92
COL9A3-205ENST00000466192 TTBK2Q6IQ55 1244 aa20.81■□□□□ 0.92
COL9A3-205ENST00000466192 OGFOD1Q8N543 542 aa20.81■□□□□ 0.92
COL9A3-205ENST00000466192 PDILTQ8N807 584 aa20.81■□□□□ 0.92
COL9A3-205ENST00000466192 MKL1Q969V6 931 aa20.81■□□□□ 0.92
COL9A3-205ENST00000466192 NAP1L5Q96NT1 182 aaPredicted RBP20.81■□□□□ 0.92
COL9A3-205ENST00000466192 CSRNP1Q96S65 589 aa20.81■□□□□ 0.92
COL9A3-205ENST00000466192 KANSL2Q9H9L4 492 aa20.81■□□□□ 0.92
COL9A3-205ENST00000466192 SERTAD1Q9UHV2 236 aa20.81■□□□□ 0.92
COL9A3-205ENST00000466192 VWA3AA6NCI4 1184 aa20.8■□□□□ 0.92
COL9A3-205ENST00000466192 GDF11O95390 407 aa20.8■□□□□ 0.92
COL9A3-205ENST00000466192 SARM1Q6SZW1 724 aa20.8■□□□□ 0.92
COL9A3-205ENST00000466192 SIAH1Q8IUQ4 282 aa20.8■□□□□ 0.92
COL9A3-205ENST00000466192 ELOA2Q8IYF1 753 aaPredicted RBP20.8■□□□□ 0.92
COL9A3-205ENST00000466192 C4orf32Q8N8J7 132 aa20.8■□□□□ 0.92
COL9A3-205ENST00000466192 NYAP2Q9P242 653 aa20.8■□□□□ 0.92
COL9A3-205ENST00000466192 ZNF70Q9UC06 446 aaPredicted RBP20.8■□□□□ 0.92
COL9A3-205ENST00000466192 CXCL9Q07325 125 aa20.8■□□□□ 0.92
COL9A3-205ENST00000466192 IL17AQ16552 155 aa20.8■□□□□ 0.92
COL9A3-205ENST00000466192 INF2Q27J81 1249 aa20.8■□□□□ 0.92
COL9A3-205ENST00000466192 KCTD1Q719H9 257 aa20.8■□□□□ 0.92
COL9A3-205ENST00000466192 ADGRF4Q8IZF3 695 aa20.8■□□□□ 0.92
COL9A3-205ENST00000466192 SYMPKQ92797 1274 aaKnown RBP20.8■□□□□ 0.92
COL9A3-205ENST00000466192 JMJD4Q9H9V9 463 aa20.8■□□□□ 0.92
COL9A3-205ENST00000466192 C6orf50Q9HD87 102 aa20.8■□□□□ 0.92
COL9A3-205ENST00000466192 TMOD2Q9NZR1 351 aa20.8■□□□□ 0.92
COL9A3-205ENST00000466192 A0A087X0B3 334 aa20.79■□□□□ 0.92
COL9A3-205ENST00000466192 JAG1P78504 1218 aa20.79■□□□□ 0.92
COL9A3-205ENST00000466192 RRP1BQ14684 758 aaKnown RBP20.79■□□□□ 0.92
COL9A3-205ENST00000466192 CCDC96Q2M329 555 aa20.79■□□□□ 0.92
COL9A3-205ENST00000466192 ABCB5Q2M3G0 1257 aa20.79■□□□□ 0.92
COL9A3-205ENST00000466192 GPATCH4Q5T3I0 446 aaKnown RBP20.79■□□□□ 0.92
COL9A3-205ENST00000466192 TMEM179Q6ZVK1 233 aa20.79■□□□□ 0.92
COL9A3-205ENST00000466192 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.79■□□□□ 0.92
COL9A3-205ENST00000466192 BPIFA3Q9BQP9 254 aa20.79■□□□□ 0.92
COL9A3-205ENST00000466192 KCNF1Q9H3M0 494 aa20.79■□□□□ 0.92
COL9A3-205ENST00000466192 PPP1R1BQ9UD71 204 aaPredicted RBP20.79■□□□□ 0.92
COL9A3-205ENST00000466192 ACTN4O43707 911 aaKnown RBP20.79■□□□□ 0.92
COL9A3-205ENST00000466192 RRP9O43818 475 aaKnown RBP20.79■□□□□ 0.92
COL9A3-205ENST00000466192 PTGS1P23219 599 aa20.79■□□□□ 0.92
COL9A3-205ENST00000466192 GNA11P29992 359 aa20.79■□□□□ 0.92
COL9A3-205ENST00000466192 AGBL3Q8NEM8 1001 aa20.79■□□□□ 0.92
COL9A3-205ENST00000466192 COA7Q96BR5 231 aa20.79■□□□□ 0.92
COL9A3-205ENST00000466192 NRBP1Q9UHY1 535 aa20.79■□□□□ 0.92
COL9A3-205ENST00000466192 hCG_1984214I3L0E3 225 aa20.78■□□□□ 0.92
COL9A3-205ENST00000466192 SLC16A2P36021 539 aa20.78■□□□□ 0.92
COL9A3-205ENST00000466192 R3HDM1Q15032 1099 aaKnown RBP20.78■□□□□ 0.92
COL9A3-205ENST00000466192 SPDYE2Q495Y8 402 aa20.78■□□□□ 0.92
COL9A3-205ENST00000466192 ZNF713Q8N859 430 aaPredicted RBP20.78■□□□□ 0.92
COL9A3-205ENST00000466192 TAOK3Q9H2K8 898 aa20.78■□□□□ 0.92
COL9A3-205ENST00000466192 PCDHA5Q9Y5H7 936 aa20.78■□□□□ 0.92
COL9A3-205ENST00000466192 CNTNAP1P78357 1384 aa20.78■□□□□ 0.92
COL9A3-205ENST00000466192 ESYT2A0FGR8 921 aa20.78■□□□□ 0.92
COL9A3-205ENST00000466192 TPM3P06753 285 aa20.78■□□□□ 0.92
COL9A3-205ENST00000466192 ICA1Q05084 483 aa20.78■□□□□ 0.92
COL9A3-205ENST00000466192 CCDC186Q7Z3E2 898 aa20.78■□□□□ 0.92
COL9A3-205ENST00000466192 POSTNQ15063 836 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms