RNA–Protein interactions for RNA: ENST00000465627.5

UBA3-208, Transcript of ubiquitin like modifier activating enzyme 3, human

TSL 2

Gene UBA3, Length 1,388 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBA3-208	ENST00000465627	SSC5D	A1L4H1	1573 aa		10.28	□□□□□ -0.76
UBA3-208	ENST00000465627	ATAD5	Q96QE3	1844 aa		10.27	□□□□□ -0.76
UBA3-208	ENST00000465627	TMEM265	A0A087WTH1	108 aa		10.27	□□□□□ -0.76
UBA3-208	ENST00000465627	ERICH2	A1L162	156 aa		10.27	□□□□□ -0.76
UBA3-208	ENST00000465627	GOLGA8A	A7E2F4	631 aa		10.27	□□□□□ -0.76
UBA3-208	ENST00000465627	SLC10A3	P09131	477 aa		10.27	□□□□□ -0.76
UBA3-208	ENST00000465627	SNHG28	P0DPA3	235 aa		10.27	□□□□□ -0.76
UBA3-208	ENST00000465627	HMGN5	P82970	282 aa	Known RBP	10.27	□□□□□ -0.76
UBA3-208	ENST00000465627	RASA3	Q14644	834 aa		10.27	□□□□□ -0.76
UBA3-208	ENST00000465627	SLC35G1	Q2M3R5	365 aa		10.27	□□□□□ -0.76
UBA3-208	ENST00000465627	MICU3	Q86XE3	530 aa		10.27	□□□□□ -0.76
UBA3-208	ENST00000465627	TNPO1	Q92973	898 aa	Known RBP	10.27	□□□□□ -0.76
UBA3-208	ENST00000465627	MKL1	Q969V6	931 aa		10.27	□□□□□ -0.76
UBA3-208	ENST00000465627	CHMP4C	Q96CF2	233 aa		10.27	□□□□□ -0.76
UBA3-208	ENST00000465627	PHF20L1	A8MW92	1017 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627		H7C1D1	291 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	ARHGAP33	O14559	1287 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	STX6	O43752	255 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	MYO1B	O43795	1136 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	DHX16	O60231	1041 aa	Known RBP	10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	CALM1	P0DP23	149 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	CALM2	P0DP24	149 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	CALM3	P0DP25	149 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	TOP1	P11387	765 aa	Known RBP	10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	GRM4	Q14833	912 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	RTN1	Q16799	776 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	NFXL1	Q6ZNB6	911 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	PNMA1	Q8ND90	353 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	PTCD2	Q8WV60	388 aa	Known RBP	10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	VEZT	Q9HBM0	779 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	MYH6	P13533	1939 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	MYH15	Q9Y2K3	1946 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	PALM3	A6NDB9	673 aa	Predicted RBP	10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	FMNL1	O95466	1100 aa	Predicted RBP	10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	ZSCAN22	P10073	491 aa	Predicted RBP	10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	PDIA4	P13667	645 aa	Known RBP	10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	FOXK1	P85037	733 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	CERKL	Q49MI3	558 aa	Predicted RBP	10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	RBM26	Q5T8P6	1007 aa	Known RBP	10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	TMTC3	Q6ZXV5	915 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	CATIP	Q7Z7H3	387 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	USP48	Q86UV5	1035 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	CLEC10A	Q8IUN9	316 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	CCDC144CP	Q8IYA2	1237 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	HS6ST3	Q8IZP7	471 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	SHISA4	Q96DD7	197 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	ADARB2	Q9NS39	739 aa	Known RBP	10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	NYAP2	Q9P242	653 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	MAD2L2	Q9UI95	211 aa		10.26	□□□□□ -0.77
UBA3-208	ENST00000465627	CNTNAP5	Q8WYK1	1306 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	PHIP	Q8WWQ0	1821 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	CCDC196	A0A1B0GTZ2	297 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	UBE2Q2L	H0YL09	131 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	PLEKHA8P1	O95397	391 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	TTLL1	O95922	423 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	PDC	P20941	246 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	TNNI2	P48788	182 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	TNFAIP1	Q13829	316 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	PKN1	Q16512	942 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	ANGEL2	Q5VTE6	544 aa	Known RBP	10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	ADGRD1	Q6QNK2	874 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	SYNE3	Q6ZMZ3	975 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	TMEM179	Q6ZVK1	233 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	CDC37L1	Q7L3B6	337 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	RASGRP2	Q7LDG7	609 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	APOBEC3F	Q8IUX4	373 aa	Known RBP	10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	SRBD1	Q8N5C6	995 aa	Known RBP	10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	DPF3	Q92784	378 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	PHKB	Q93100	1093 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	DDX11	Q96FC9	970 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	DEFB129	Q9H1M3	183 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	RBM28	Q9NW13	759 aa	Known RBP	10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	ZNF112	Q9UJU3	913 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	SCAF8	Q9UPN6	1271 aa	Known RBP	10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	TRIM17	Q9Y577	477 aa		10.25	□□□□□ -0.77
UBA3-208	ENST00000465627	SYNGAP1	Q96PV0	1343 aa		10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	DOCK1	Q14185	1865 aa		10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	TCHH	Q07283	1943 aa		10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	CYTH3	O43739	400 aa		10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	FKTN	O75072	461 aa		10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	CDKL5	O76039	1030 aa		10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	F13A1	P00488	732 aa		10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	PDHB	P11177	359 aa		10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	SEPT2	Q15019	361 aa		10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	NFKBIB	Q15653	356 aa		10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	LARP1B	Q659C4	914 aa	Known RBP	10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	OTOP1	Q7RTM1	612 aa		10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	PLPP6	Q8IY26	295 aa		10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	STAG2	Q8N3U4	1231 aa		10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	FBXO18	Q8NFZ0	1043 aa		10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	ARMC5	Q96C12	935 aa		10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	AIFM3	Q96NN9	605 aa		10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	RNF26	Q9BY78	433 aa	Predicted RBP	10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	KAT14	Q9H8E8	782 aa		10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	KANSL2	Q9H9L4	492 aa		10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	GBA2	Q9HCG7	927 aa	Predicted RBP	10.24	□□□□□ -0.77
UBA3-208	ENST00000465627	GGA3	Q9NZ52	723 aa		10.24	□□□□□ -0.77

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