RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 PRKAB2O43741 272 aa17.42■□□□□ 0.38
SMC1A-204ENST00000463684 FAM83BQ5T0W9 1011 aa17.42■□□□□ 0.38
SMC1A-204ENST00000463684 CCSAPQ6IQ19 270 aaPredicted RBP17.42■□□□□ 0.38
SMC1A-204ENST00000463684 MAMDC4Q6UXC1 1216 aa17.42■□□□□ 0.38
SMC1A-204ENST00000463684 C16orf86Q6ZW13 317 aa17.42■□□□□ 0.38
SMC1A-204ENST00000463684 IL27Q8NEV9 243 aa17.42■□□□□ 0.38
SMC1A-204ENST00000463684 RHPN1Q8TCX5 695 aa17.42■□□□□ 0.38
SMC1A-204ENST00000463684 THEGQ9P2T0 379 aa17.42■□□□□ 0.38
SMC1A-204ENST00000463684 MSRAQ9UJ68 235 aa17.42■□□□□ 0.38
SMC1A-204ENST00000463684 GRXCR1A8MXD5 290 aa17.41■□□□□ 0.38
SMC1A-204ENST00000463684 USP17L12C9JPN9 530 aa17.41■□□□□ 0.38
SMC1A-204ENST00000463684 USP17L21D6R901 530 aa17.41■□□□□ 0.38
SMC1A-204ENST00000463684 APBB1O00213 710 aa17.41■□□□□ 0.38
SMC1A-204ENST00000463684 TLR3O15455 904 aaKnown RBP17.41■□□□□ 0.38
SMC1A-204ENST00000463684 MBD4O95243 580 aa17.41■□□□□ 0.38
SMC1A-204ENST00000463684 SNAI1O95863 264 aaPredicted RBP17.41■□□□□ 0.38
SMC1A-204ENST00000463684 ASGR1P07306 291 aa17.41■□□□□ 0.38
SMC1A-204ENST00000463684 IFIT2P09913 472 aaKnown RBP17.41■□□□□ 0.38
SMC1A-204ENST00000463684 C6orf222P0C671 652 aaPredicted RBP17.41■□□□□ 0.38
SMC1A-204ENST00000463684 CSF2RAP15509 400 aa17.41■□□□□ 0.38
SMC1A-204ENST00000463684 PBX2P40425 430 aa17.41■□□□□ 0.38
SMC1A-204ENST00000463684 CDK7P50613 346 aa17.41■□□□□ 0.38
SMC1A-204ENST00000463684 MRPS5P82675 430 aaKnown RBP17.41■□□□□ 0.38
SMC1A-204ENST00000463684 PSRC1Q6PGN9 363 aaPredicted RBP17.41■□□□□ 0.38
SMC1A-204ENST00000463684 C16orf59Q7L2K0 433 aa17.41■□□□□ 0.38
SMC1A-204ENST00000463684 REPS2Q8NFH8 660 aa17.41■□□□□ 0.38
SMC1A-204ENST00000463684 TEX13BQ9BXU2 312 aa17.41■□□□□ 0.38
SMC1A-204ENST00000463684 CTDP1Q9Y5B0 961 aaPredicted RBP17.41■□□□□ 0.38
SMC1A-204ENST00000463684 NAV1Q8NEY1 1877 aa17.41■□□□□ 0.38
SMC1A-204ENST00000463684 CYP2D7A0A087X1C5 515 aa17.4■□□□□ 0.38
SMC1A-204ENST00000463684 A0A0U1RQG5 324 aaPredicted RBP17.4■□□□□ 0.38
SMC1A-204ENST00000463684 ARVCFO00192 962 aa17.4■□□□□ 0.38
SMC1A-204ENST00000463684 IGFBP4P22692 258 aa17.4■□□□□ 0.38
SMC1A-204ENST00000463684 CST5P28325 142 aaPredicted RBP17.4■□□□□ 0.38
SMC1A-204ENST00000463684 SLC4A3P48751 1232 aa17.4■□□□□ 0.38
SMC1A-204ENST00000463684 ACVR2BQ13705 512 aa17.4■□□□□ 0.38
SMC1A-204ENST00000463684 RAB30Q15771 203 aa17.4■□□□□ 0.38
SMC1A-204ENST00000463684 CCDC85BQ15834 202 aaPredicted RBP17.4■□□□□ 0.38
SMC1A-204ENST00000463684 RASIP1Q5U651 963 aa17.4■□□□□ 0.38
SMC1A-204ENST00000463684 SNRNP48Q6IEG0 339 aaKnown RBP17.4■□□□□ 0.38
SMC1A-204ENST00000463684 ZNF365Q70YC5 407 aa17.4■□□□□ 0.38
SMC1A-204ENST00000463684 SLF1Q9BQI6 1058 aa17.4■□□□□ 0.38
SMC1A-204ENST00000463684 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.4■□□□□ 0.38
SMC1A-204ENST00000463684 BCL11AQ9H165 835 aa17.4■□□□□ 0.38
SMC1A-204ENST00000463684 MTIF3Q9H2K0 278 aaKnown RBP17.4■□□□□ 0.38
SMC1A-204ENST00000463684 MUC3AQ02505 3323 aa17.39■□□□□ 0.38
SMC1A-204ENST00000463684 SMCHD1A6NHR9 2005 aa17.39■□□□□ 0.37
SMC1A-204ENST00000463684 MYADML2A6NDP7 307 aa17.39■□□□□ 0.37
SMC1A-204ENST00000463684 ACRP10323 421 aa17.39■□□□□ 0.37
SMC1A-204ENST00000463684 ADD2P35612 726 aa17.39■□□□□ 0.37
SMC1A-204ENST00000463684 GNASQ5JWF2 1037 aa17.39■□□□□ 0.37
SMC1A-204ENST00000463684 ZNF467Q7Z7K2 595 aaPredicted RBP17.39■□□□□ 0.37
SMC1A-204ENST00000463684 PRPF38AQ8NAV1 312 aaKnown RBP17.39■□□□□ 0.37
SMC1A-204ENST00000463684 ADAMTS19Q8TE59 1207 aa17.39■□□□□ 0.37
SMC1A-204ENST00000463684 KIF1BPQ96EK5 621 aa17.39■□□□□ 0.37
SMC1A-204ENST00000463684 PPP1R12CQ9BZL4 782 aa17.39■□□□□ 0.37
SMC1A-204ENST00000463684 ABHD16BQ9H3Z7 469 aa17.39■□□□□ 0.37
SMC1A-204ENST00000463684 PAG1Q9NWQ8 432 aa17.39■□□□□ 0.37
SMC1A-204ENST00000463684 DNAJC25-GNG10A0A024R161 153 aa17.38■□□□□ 0.37
SMC1A-204ENST00000463684 SMIM22K7EJ46 135 aa17.38■□□□□ 0.37
SMC1A-204ENST00000463684 ZBED4O75132 1171 aa17.38■□□□□ 0.37
SMC1A-204ENST00000463684 RLBP1P12271 317 aa17.38■□□□□ 0.37
SMC1A-204ENST00000463684 GJA9P57773 515 aa17.38■□□□□ 0.37
SMC1A-204ENST00000463684 ANKRD35Q8N283 1001 aa17.38■□□□□ 0.37
SMC1A-204ENST00000463684 UHRF1Q96T88 793 aaPredicted RBP17.38■□□□□ 0.37
SMC1A-204ENST00000463684 TSPYL2Q9H2G4 693 aaPredicted RBP17.38■□□□□ 0.37
SMC1A-204ENST00000463684 SLC28A3Q9HAS3 691 aa17.38■□□□□ 0.37
SMC1A-204ENST00000463684 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.38■□□□□ 0.37
SMC1A-204ENST00000463684 RIPK3Q9Y572 518 aa17.38■□□□□ 0.37
SMC1A-204ENST00000463684 SLC4A4Q9Y6R1 1079 aa17.38■□□□□ 0.37
SMC1A-204ENST00000463684 FGBP02675 491 aa17.37■□□□□ 0.37
SMC1A-204ENST00000463684 CCDC144BQ3MJ40 725 aa17.37■□□□□ 0.37
SMC1A-204ENST00000463684 SLFNL1Q499Z3 407 aa17.37■□□□□ 0.37
SMC1A-204ENST00000463684 CTR9Q6PD62 1173 aa17.37■□□□□ 0.37
SMC1A-204ENST00000463684 CPXCR1Q8N123 301 aa17.37■□□□□ 0.37
SMC1A-204ENST00000463684 NUP88Q99567 741 aaPredicted RBP17.37■□□□□ 0.37
SMC1A-204ENST00000463684 IL23AQ9NPF7 189 aa17.37■□□□□ 0.37
SMC1A-204ENST00000463684 ZNFX1Q9P2E3 1918 aaKnown RBP17.37■□□□□ 0.37
SMC1A-204ENST00000463684 TTC28Q96AY4 2481 aa17.37■□□□□ 0.37
SMC1A-204ENST00000463684 F5H6K3 240 aa17.36■□□□□ 0.37
SMC1A-204ENST00000463684 CCER2I3L3R5 266 aa17.36■□□□□ 0.37
SMC1A-204ENST00000463684 ATP2A1O14983 1001 aa17.36■□□□□ 0.37
SMC1A-204ENST00000463684 CYP2C18P33260 490 aa17.36■□□□□ 0.37
SMC1A-204ENST00000463684 IRX5P78411 483 aaPredicted RBP17.36■□□□□ 0.37
SMC1A-204ENST00000463684 KLRC3Q07444 240 aa17.36■□□□□ 0.37
SMC1A-204ENST00000463684 ADGRE1Q14246 886 aa17.36■□□□□ 0.37
SMC1A-204ENST00000463684 FAM126BQ8IXS8 530 aa17.36■□□□□ 0.37
SMC1A-204ENST00000463684 HERVK_113Q902F9 699 aa17.36■□□□□ 0.37
SMC1A-204ENST00000463684 UPF3AQ9H1J1 476 aaKnown RBP17.36■□□□□ 0.37
SMC1A-204ENST00000463684 BOLA2Q9H3K6 86 aa17.36■□□□□ 0.37
SMC1A-204ENST00000463684 FBXO40Q9UH90 709 aa17.36■□□□□ 0.37
SMC1A-204ENST00000463684 RAPGEFL1Q9UHV5 662 aa17.36■□□□□ 0.37
SMC1A-204ENST00000463684 NKX2-4Q9H2Z4 354 aa17.35■□□□□ 0.37
SMC1A-204ENST00000463684 MKNK2Q9HBH9 465 aa17.35■□□□□ 0.37
SMC1A-204ENST00000463684 RAVER2Q9HCJ3 691 aaKnown RBP17.35■□□□□ 0.37
SMC1A-204ENST00000463684 NYAP2Q9P242 653 aa17.35■□□□□ 0.37
SMC1A-204ENST00000463684 ADCY6O43306 1168 aa17.34■□□□□ 0.37
SMC1A-204ENST00000463684 CD4P01730 458 aa17.34■□□□□ 0.37
SMC1A-204ENST00000463684 UBE3CQ15386 1083 aa17.34■□□□□ 0.37
SMC1A-204ENST00000463684 ZSCAN25Q6NSZ9 544 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms