RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 SOS2Q07890 1332 aaPredicted RBP16.36■□□□□ 0.21
PTPRU-205ENST00000460170 MCTP2Q6DN12 878 aa16.36■□□□□ 0.21
PTPRU-205ENST00000460170 MAEAQ7L5Y9 396 aa16.36■□□□□ 0.21
PTPRU-205ENST00000460170 ENOX1Q8TC92 643 aaKnown RBP16.36■□□□□ 0.21
PTPRU-205ENST00000460170 SLC39A2Q9NP94 309 aa16.36■□□□□ 0.21
PTPRU-205ENST00000460170 PCDHA4Q9UN74 947 aa16.36■□□□□ 0.21
PTPRU-205ENST00000460170 KLHL7Q8IXQ5 586 aa16.36■□□□□ 0.21
PTPRU-205ENST00000460170 UBL4BQ8N7F7 174 aa16.36■□□□□ 0.21
PTPRU-205ENST00000460170 CUEDC2Q9H467 287 aa16.36■□□□□ 0.21
PTPRU-205ENST00000460170 UTP11Q9Y3A2 253 aaKnown RBP16.36■□□□□ 0.21
PTPRU-205ENST00000460170 SPATA31A3Q5VYP0 1347 aa16.36■□□□□ 0.21
PTPRU-205ENST00000460170 A6NNZ2 444 aa16.36■□□□□ 0.21
PTPRU-205ENST00000460170 TUBB8Q3ZCM7 444 aa16.36■□□□□ 0.21
PTPRU-205ENST00000460170 GRAMD1CQ8IYS0 662 aa16.36■□□□□ 0.21
PTPRU-205ENST00000460170 PPP1R14CQ8TAE6 165 aa16.36■□□□□ 0.21
PTPRU-205ENST00000460170 PGBD1Q96JS3 809 aa16.36■□□□□ 0.21
PTPRU-205ENST00000460170 LSM14BQ9BX40 385 aaKnown RBP16.36■□□□□ 0.21
PTPRU-205ENST00000460170 SRPRBQ9Y5M8 271 aaKnown RBP16.36■□□□□ 0.21
PTPRU-205ENST00000460170 NRKQ7Z2Y5 1582 aa16.36■□□□□ 0.21
PTPRU-205ENST00000460170 HPDP32754 393 aaPredicted RBP16.36■□□□□ 0.21
PTPRU-205ENST00000460170 ERFEQ4G0M1 354 aa16.36■□□□□ 0.21
PTPRU-205ENST00000460170 CCDC114Q96M63 670 aa16.36■□□□□ 0.21
PTPRU-205ENST00000460170 CTTNBP2NLQ9P2B4 639 aa16.36■□□□□ 0.21
PTPRU-205ENST00000460170 XDHP47989 1333 aa16.35■□□□□ 0.21
PTPRU-205ENST00000460170 DDX39AO00148 427 aaKnown RBP16.35■□□□□ 0.21
PTPRU-205ENST00000460170 PEX26Q7Z412 305 aa16.35■□□□□ 0.21
PTPRU-205ENST00000460170 C10orf67Q8IYJ2 551 aa16.35■□□□□ 0.21
PTPRU-205ENST00000460170 SYCE1Q8N0S2 351 aa16.35■□□□□ 0.21
PTPRU-205ENST00000460170 MSANTD4Q8NCY6 345 aa16.35■□□□□ 0.21
PTPRU-205ENST00000460170 PCDHB13Q9Y5F0 798 aa16.35■□□□□ 0.21
PTPRU-205ENST00000460170 PRPF3O43395 683 aaKnown RBP16.35■□□□□ 0.21
PTPRU-205ENST00000460170 DKC1O60832 514 aaKnown RBP eCLIP16.35■□□□□ 0.214e-7■■■■■ 29.5
PTPRU-205ENST00000460170 XRCC5P13010 732 aaKnown RBP16.35■□□□□ 0.21
PTPRU-205ENST00000460170 CYP2E1P05181 493 aaPredicted RBP16.35■□□□□ 0.21
PTPRU-205ENST00000460170 TPH2Q8IWU9 490 aa16.35■□□□□ 0.21
PTPRU-205ENST00000460170 CPXCR1Q8N123 301 aa16.35■□□□□ 0.21
PTPRU-205ENST00000460170 NDUFAB1O14561 156 aa16.35■□□□□ 0.21
PTPRU-205ENST00000460170 HLFQ16534 295 aa16.35■□□□□ 0.21
PTPRU-205ENST00000460170 RASGRP4Q8TDF6 673 aa16.35■□□□□ 0.21
PTPRU-205ENST00000460170 IFT74Q96LB3 600 aa16.35■□□□□ 0.21
PTPRU-205ENST00000460170 PCDHB6Q9Y5E3 794 aa16.35■□□□□ 0.21
PTPRU-205ENST00000460170 MYCLP12524 364 aaPredicted RBP16.34■□□□□ 0.21
PTPRU-205ENST00000460170 FAM26FQ5R3K3 315 aa16.34■□□□□ 0.21
PTPRU-205ENST00000460170 SUSD4Q5VX71 490 aa16.34■□□□□ 0.21
PTPRU-205ENST00000460170 SMYD4Q8IYR2 804 aaPredicted RBP16.34■□□□□ 0.21
PTPRU-205ENST00000460170 LARGE2Q8N3Y3 721 aa16.34■□□□□ 0.21
PTPRU-205ENST00000460170 DDX25Q9UHL0 483 aaKnown RBP16.34■□□□□ 0.21
PTPRU-205ENST00000460170 IQSEC2Q5JU85 1478 aa16.34■□□□□ 0.21
PTPRU-205ENST00000460170 POLR1AO95602 1720 aaPredicted RBP16.34■□□□□ 0.21
PTPRU-205ENST00000460170 BCRP11274 1271 aa16.34■□□□□ 0.21
PTPRU-205ENST00000460170 GOLGA8FQ08AF8 430 aa16.34■□□□□ 0.21
PTPRU-205ENST00000460170 GOLGA8DPQ0D2H9 430 aa16.34■□□□□ 0.21
PTPRU-205ENST00000460170 PRR16Q569H4 304 aa16.34■□□□□ 0.21
PTPRU-205ENST00000460170 EEF2KMTQ96G04 330 aa16.34■□□□□ 0.21
PTPRU-205ENST00000460170 ARMCX3Q9UH62 379 aaPredicted RBP16.34■□□□□ 0.21
PTPRU-205ENST00000460170 PPFIA1Q13136 1202 aa16.34■□□□□ 0.21
PTPRU-205ENST00000460170 SUPT20HQ8NEM7 779 aa16.34■□□□□ 0.21
PTPRU-205ENST00000460170 PDLIM2Q96JY6 352 aa16.34■□□□□ 0.21
PTPRU-205ENST00000460170 AK8Q96MA6 479 aa16.34■□□□□ 0.21
PTPRU-205ENST00000460170 TUBGCP2Q9BSJ2 902 aa16.34■□□□□ 0.21
PTPRU-205ENST00000460170 KCNK9Q9NPC2 374 aa16.34■□□□□ 0.21
PTPRU-205ENST00000460170 TRIM31Q9BZY9 425 aa16.34■□□□□ 0.21
PTPRU-205ENST00000460170 ALDH8A1Q9H2A2 487 aaPredicted RBP16.34■□□□□ 0.21
PTPRU-205ENST00000460170 GJB4Q9NTQ9 266 aa16.34■□□□□ 0.21
PTPRU-205ENST00000460170 PANK4Q9NVE7 773 aa16.34■□□□□ 0.21
PTPRU-205ENST00000460170 GAS7O60861 476 aa16.33■□□□□ 0.21
PTPRU-205ENST00000460170 MSL1Q68DK7 614 aa16.33■□□□□ 0.21
PTPRU-205ENST00000460170 SARM1Q6SZW1 724 aa16.33■□□□□ 0.21
PTPRU-205ENST00000460170 CHURC1Q8WUH1 139 aa16.33■□□□□ 0.21
PTPRU-205ENST00000460170 SAMD15Q9P1V8 674 aa16.33■□□□□ 0.21
PTPRU-205ENST00000460170 HYOU1Q9Y4L1 999 aa16.33■□□□□ 0.21
PTPRU-205ENST00000460170 EEF1GP26641 437 aaKnown RBP16.33■□□□□ 0.21
PTPRU-205ENST00000460170 DPH6Q7L8W6 267 aa16.33■□□□□ 0.21
PTPRU-205ENST00000460170 SLFN12Q8IYM2 578 aa16.33■□□□□ 0.21
PTPRU-205ENST00000460170 CDC23Q9UJX2 597 aa16.33■□□□□ 0.21
PTPRU-205ENST00000460170 HARSP12081 509 aaKnown RBP16.33■□□□□ 0.2
PTPRU-205ENST00000460170 RUFY4Q6ZNE9 571 aa16.33■□□□□ 0.2
PTPRU-205ENST00000460170 B4GALNT4Q76KP1 1039 aa16.33■□□□□ 0.2
PTPRU-205ENST00000460170 DAAM2Q86T65 1068 aa16.33■□□□□ 0.2
PTPRU-205ENST00000460170 VSTM4Q8IW00 320 aa16.33■□□□□ 0.2
PTPRU-205ENST00000460170 RABGGTAQ92696 567 aa16.33■□□□□ 0.2
PTPRU-205ENST00000460170 GDAP1L1Q96MZ0 367 aa16.33■□□□□ 0.2
PTPRU-205ENST00000460170 COBLO75128 1261 aa16.33■□□□□ 0.2
PTPRU-205ENST00000460170 SCNN1DP51172 638 aa16.33■□□□□ 0.2
PTPRU-205ENST00000460170 TSGA10IPQ3SY00 556 aa16.33■□□□□ 0.2
PTPRU-205ENST00000460170 CYP2D7A0A087X1C5 515 aa16.32■□□□□ 0.2
PTPRU-205ENST00000460170 STAT1P42224 750 aa16.32■□□□□ 0.2
PTPRU-205ENST00000460170 PTPN21Q16825 1174 aa16.32■□□□□ 0.2
PTPRU-205ENST00000460170 DHTKD1Q96HY7 919 aaPredicted RBP16.32■□□□□ 0.2
PTPRU-205ENST00000460170 CNOT6LQ96LI5 555 aaKnown RBP16.32■□□□□ 0.2
PTPRU-205ENST00000460170 RPAP1Q9BWH6 1393 aaPredicted RBP16.32■□□□□ 0.2
PTPRU-205ENST00000460170 MYCNP04198 464 aaPredicted RBP16.32■□□□□ 0.2
PTPRU-205ENST00000460170 TCP1P17987 556 aaKnown RBP16.32■□□□□ 0.2
PTPRU-205ENST00000460170 DLGAP5Q15398 846 aa16.32■□□□□ 0.2
PTPRU-205ENST00000460170 CERKLQ49MI3 558 aaPredicted RBP16.32■□□□□ 0.2
PTPRU-205ENST00000460170 FBF1Q8TES7 1133 aa16.32■□□□□ 0.2
PTPRU-205ENST00000460170 SAMSN1Q9NSI8 373 aaKnown RBP16.32■□□□□ 0.2
PTPRU-205ENST00000460170 RBL2Q08999 1139 aa16.32■□□□□ 0.2
PTPRU-205ENST00000460170 C6orf163Q5TEZ5 329 aa16.32■□□□□ 0.2
PTPRU-205ENST00000460170 NSMFQ6X4W1 530 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms