RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 IGF2BP3O00425 579 aaKnown RBP eCLIP13.49□□□□□ -0.25
SCN9A-204ENST00000452182 ALDH1A1P00352 501 aa13.49□□□□□ -0.25
SCN9A-204ENST00000452182 STAT2P52630 851 aa13.49□□□□□ -0.25
SCN9A-204ENST00000452182 COG2Q14746 738 aa13.49□□□□□ -0.25
SCN9A-204ENST00000452182 RTN1Q16799 776 aa13.49□□□□□ -0.25
SCN9A-204ENST00000452182 CCDC96Q2M329 555 aa13.49□□□□□ -0.25
SCN9A-204ENST00000452182 KCTD1Q719H9 257 aa13.49□□□□□ -0.25
SCN9A-204ENST00000452182 FAM43AQ8N2R8 423 aa13.49□□□□□ -0.25
SCN9A-204ENST00000452182 CHURC1Q8WUH1 139 aa13.49□□□□□ -0.25
SCN9A-204ENST00000452182 SNX21Q969T3 373 aa13.49□□□□□ -0.25
SCN9A-204ENST00000452182 LZTS2Q9BRK4 669 aa13.49□□□□□ -0.25
SCN9A-204ENST00000452182 TANGO6Q9C0B7 1094 aa13.49□□□□□ -0.25
SCN9A-204ENST00000452182 SH2B1Q9NRF2 756 aaPredicted RBP13.49□□□□□ -0.25
SCN9A-204ENST00000452182 HOXC10Q9NYD6 342 aa13.49□□□□□ -0.25
SCN9A-204ENST00000452182 KLRF2D3W0D1 207 aa13.48□□□□□ -0.25
SCN9A-204ENST00000452182 PFKFB2O60825 505 aa13.48□□□□□ -0.25
SCN9A-204ENST00000452182 FLOT1O75955 427 aa13.48□□□□□ -0.25
SCN9A-204ENST00000452182 CD2BP2O95400 341 aaKnown RBP13.48□□□□□ -0.25
SCN9A-204ENST00000452182 GOLGA8HP0CJ92 632 aa13.48□□□□□ -0.25
SCN9A-204ENST00000452182 RXRAP19793 462 aa13.48□□□□□ -0.25
SCN9A-204ENST00000452182 OSBPP22059 807 aa13.48□□□□□ -0.25
SCN9A-204ENST00000452182 ME3Q16798 604 aa13.48□□□□□ -0.25
SCN9A-204ENST00000452182 LBX2Q6XYB7 198 aa13.48□□□□□ -0.25
SCN9A-204ENST00000452182 STAG2Q8N3U4 1231 aa13.48□□□□□ -0.25
SCN9A-204ENST00000452182 DNAJC5GQ8N7S2 189 aa13.48□□□□□ -0.25
SCN9A-204ENST00000452182 PRPF38AQ8NAV1 312 aaKnown RBP13.48□□□□□ -0.25
SCN9A-204ENST00000452182 LARP6Q9BRS8 491 aaKnown RBP13.48□□□□□ -0.25
SCN9A-204ENST00000452182 ASCC2Q9H1I8 757 aaPredicted RBP13.48□□□□□ -0.25
SCN9A-204ENST00000452182 FAM217BQ9NTX9 383 aaPredicted RBP13.48□□□□□ -0.25
SCN9A-204ENST00000452182 PPP1R9AQ9ULJ8 1098 aa13.48□□□□□ -0.25
SCN9A-204ENST00000452182 ADAMTS5Q9UNA0 930 aa13.48□□□□□ -0.25
SCN9A-204ENST00000452182 FRMPD2Q68DX3 1309 aaPredicted RBP13.48□□□□□ -0.25
SCN9A-204ENST00000452182 A0A0G2JMZ2 1700 aa13.47□□□□□ -0.25
SCN9A-204ENST00000452182 FDX1P10109 184 aa13.47□□□□□ -0.25
SCN9A-204ENST00000452182 IRX3P78415 501 aaPredicted RBP13.47□□□□□ -0.25
SCN9A-204ENST00000452182 CHMP4CQ96CF2 233 aa13.47□□□□□ -0.25
SCN9A-204ENST00000452182 FAM212AQ96EL1 285 aa13.47□□□□□ -0.25
SCN9A-204ENST00000452182 SLF1Q9BQI6 1058 aa13.47□□□□□ -0.25
SCN9A-204ENST00000452182 SLKQ9H2G2 1235 aaPredicted RBP13.47□□□□□ -0.25
SCN9A-204ENST00000452182 GPCPD1Q9NPB8 672 aa13.47□□□□□ -0.25
SCN9A-204ENST00000452182 NAP1L2Q9ULW6 460 aaPredicted RBP13.47□□□□□ -0.25
SCN9A-204ENST00000452182 DHX16O60231 1041 aaKnown RBP13.46□□□□□ -0.25
SCN9A-204ENST00000452182 CDC27P30260 824 aa13.46□□□□□ -0.25
SCN9A-204ENST00000452182 SCRN1Q12765 414 aa13.46□□□□□ -0.25
SCN9A-204ENST00000452182 TTBK2Q6IQ55 1244 aa13.46□□□□□ -0.25
SCN9A-204ENST00000452182 TMTC3Q6ZXV5 915 aa13.46□□□□□ -0.25
SCN9A-204ENST00000452182 RAB11FIP4Q86YS3 637 aa13.46□□□□□ -0.25
SCN9A-204ENST00000452182 CCDC144CPQ8IYA2 1237 aa13.46□□□□□ -0.25
SCN9A-204ENST00000452182 GTF3C2Q8WUA4 911 aaPredicted RBP13.46□□□□□ -0.25
SCN9A-204ENST00000452182 GTF3C6Q969F1 213 aa13.46□□□□□ -0.25
SCN9A-204ENST00000452182 PARK7Q99497 189 aaKnown RBP13.46□□□□□ -0.25
SCN9A-204ENST00000452182 SPZ1Q9BXG8 430 aa13.46□□□□□ -0.25
SCN9A-204ENST00000452182 RIOX1Q9H6W3 641 aa13.46□□□□□ -0.25
SCN9A-204ENST00000452182 FBXO28Q9NVF7 368 aa13.46□□□□□ -0.25
SCN9A-204ENST00000452182 SPDYE16A6NNV3 312 aaPredicted RBP13.46□□□□□ -0.26
SCN9A-204ENST00000452182 LARGE1O95461 756 aa13.46□□□□□ -0.26
SCN9A-204ENST00000452182 ADD1P35611 737 aaKnown RBP13.46□□□□□ -0.26
SCN9A-204ENST00000452182 HERVK_113P62684 666 aa13.46□□□□□ -0.26
SCN9A-204ENST00000452182 FUT2Q10981 343 aa13.46□□□□□ -0.26
SCN9A-204ENST00000452182 NTRK3Q16288 839 aa13.46□□□□□ -0.26
SCN9A-204ENST00000452182 SYDE2Q5VT97 1194 aa13.46□□□□□ -0.26
SCN9A-204ENST00000452182 NOL8Q76FK4 1167 aaKnown RBP13.46□□□□□ -0.26
SCN9A-204ENST00000452182 MB21D1Q8N884 522 aa13.46□□□□□ -0.26
SCN9A-204ENST00000452182 P2RX7Q99572 595 aaKnown RBP13.46□□□□□ -0.26
SCN9A-204ENST00000452182 CFHR5Q9BXR6 569 aa13.46□□□□□ -0.26
SCN9A-204ENST00000452182 PRR12Q9ULL5 1215 aa13.46□□□□□ -0.26
SCN9A-204ENST00000452182 ISY1Q9ULR0 285 aaKnown RBP13.46□□□□□ -0.26
SCN9A-204ENST00000452182 CEP350Q5VT06 3117 aa13.45□□□□□ -0.26
SCN9A-204ENST00000452182 VWA5AO00534 786 aa13.45□□□□□ -0.26
SCN9A-204ENST00000452182 CA12O43570 354 aa13.45□□□□□ -0.26
SCN9A-204ENST00000452182 PLEKHA8P1O95397 391 aa13.45□□□□□ -0.26
SCN9A-204ENST00000452182 IFNAR1P17181 557 aa13.45□□□□□ -0.26
SCN9A-204ENST00000452182 SLC16A2P36021 539 aa13.45□□□□□ -0.26
SCN9A-204ENST00000452182 GCLCP48506 637 aaPredicted RBP13.45□□□□□ -0.26
SCN9A-204ENST00000452182 CCT2P78371 535 aaKnown RBP13.45□□□□□ -0.26
SCN9A-204ENST00000452182 IKQ13123 557 aaPredicted RBP13.45□□□□□ -0.26
SCN9A-204ENST00000452182 STK3Q13188 491 aa13.45□□□□□ -0.26
SCN9A-204ENST00000452182 NBPF11Q86T75 865 aa13.45□□□□□ -0.26
SCN9A-204ENST00000452182 ADGRF4Q8IZF3 695 aa13.45□□□□□ -0.26
SCN9A-204ENST00000452182 SRBD1Q8N5C6 995 aaKnown RBP13.45□□□□□ -0.26
SCN9A-204ENST00000452182 KIFC2Q96AC6 838 aa13.45□□□□□ -0.26
SCN9A-204ENST00000452182 MTMR8Q96EF0 704 aa13.45□□□□□ -0.26
SCN9A-204ENST00000452182 TMX3Q96JJ7 454 aa13.45□□□□□ -0.26
SCN9A-204ENST00000452182 UBA5Q9GZZ9 404 aa13.45□□□□□ -0.26
SCN9A-204ENST00000452182 COL11A1P12107 1806 aaPredicted RBP13.44□□□□□ -0.26
SCN9A-204ENST00000452182 CYTH3O43739 400 aa13.44□□□□□ -0.26
SCN9A-204ENST00000452182 CYP2C8P10632 490 aa13.44□□□□□ -0.26
SCN9A-204ENST00000452182 OAZ1P54368 228 aa13.44□□□□□ -0.26
SCN9A-204ENST00000452182 TAF1CQ15572 869 aaPredicted RBP13.44□□□□□ -0.26
SCN9A-204ENST00000452182 SLC35G1Q2M3R5 365 aa13.44□□□□□ -0.26
SCN9A-204ENST00000452182 CPLX2Q6PUV4 134 aaKnown RBP13.44□□□□□ -0.26
SCN9A-204ENST00000452182 SMCR8Q8TEV9 937 aaPredicted RBP13.44□□□□□ -0.26
SCN9A-204ENST00000452182 RANBP17Q9H2T7 1088 aaKnown RBP13.44□□□□□ -0.26
SCN9A-204ENST00000452182 JMJD4Q9H9V9 463 aa13.44□□□□□ -0.26
SCN9A-204ENST00000452182 SLC38A10Q9HBR0 1119 aa13.44□□□□□ -0.26
SCN9A-204ENST00000452182 NCOA5Q9HCD5 579 aaKnown RBP13.44□□□□□ -0.26
SCN9A-204ENST00000452182 ADGRA2Q96PE1 1338 aa13.44□□□□□ -0.26
SCN9A-204ENST00000452182 PCNTO95613 3336 aa13.43□□□□□ -0.26
SCN9A-204ENST00000452182 CPLX1O14810 134 aa13.43□□□□□ -0.26
SCN9A-204ENST00000452182 ATP2A1O14983 1001 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 175.4 ms