RNA–Protein interactions for RNA: ENST00000451716.5

COL27A1-202, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 2,865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-202ENST00000451716 CBFA2T2O43439 604 aa13.69□□□□□ -0.22
COL27A1-202ENST00000451716 SEMA3FQ13275 785 aa13.69□□□□□ -0.22
COL27A1-202ENST00000451716 INF2Q27J81 1249 aa13.69□□□□□ -0.22
COL27A1-202ENST00000451716 SH3RF1Q7Z6J0 888 aa13.69□□□□□ -0.22
COL27A1-202ENST00000451716 ANKS1AQ92625 1134 aa13.69□□□□□ -0.22
COL27A1-202ENST00000451716 CEP95Q96GE4 821 aa13.69□□□□□ -0.22
COL27A1-202ENST00000451716 ZNF18P17022 549 aa13.69□□□□□ -0.22
COL27A1-202ENST00000451716 CALML3P27482 149 aa13.69□□□□□ -0.22
COL27A1-202ENST00000451716 EIF6P56537 245 aaKnown RBP13.69□□□□□ -0.22
COL27A1-202ENST00000451716 DPYDQ12882 1025 aa13.69□□□□□ -0.22
COL27A1-202ENST00000451716 TXNRD1Q16881 649 aa13.69□□□□□ -0.22
COL27A1-202ENST00000451716 DOK7Q18PE1 504 aa13.69□□□□□ -0.22
COL27A1-202ENST00000451716 CT47A1Q5JQC4 288 aaPredicted RBP13.69□□□□□ -0.22
COL27A1-202ENST00000451716 KRT27Q7Z3Y8 459 aa13.69□□□□□ -0.22
COL27A1-202ENST00000451716 CLEC10AQ8IUN9 316 aa13.69□□□□□ -0.22
COL27A1-202ENST00000451716 ENOX1Q8TC92 643 aaKnown RBP13.69□□□□□ -0.22
COL27A1-202ENST00000451716 PLIN2Q99541 437 aa13.69□□□□□ -0.22
COL27A1-202ENST00000451716 MTRQ99707 1265 aa13.69□□□□□ -0.22
COL27A1-202ENST00000451716 CCDC194A0A1B0GVG4 234 aa13.68□□□□□ -0.22
COL27A1-202ENST00000451716 PALM3A6NDB9 673 aaPredicted RBP13.68□□□□□ -0.22
COL27A1-202ENST00000451716 TULP2O00295 520 aa13.68□□□□□ -0.22
COL27A1-202ENST00000451716 SLURP2P0DP57 97 aa13.68□□□□□ -0.22
COL27A1-202ENST00000451716 SLC27A3Q5K4L6 730 aa13.68□□□□□ -0.22
COL27A1-202ENST00000451716 C16orf86Q6ZW13 317 aa13.68□□□□□ -0.22
COL27A1-202ENST00000451716 TMEM60Q9H2L4 133 aa13.68□□□□□ -0.22
COL27A1-202ENST00000451716 PCDHA6Q9UN73 950 aa13.68□□□□□ -0.22
COL27A1-202ENST00000451716 DAGLAQ9Y4D2 1042 aa13.68□□□□□ -0.22
COL27A1-202ENST00000451716 PCDHA8Q9Y5H6 950 aa13.68□□□□□ -0.22
COL27A1-202ENST00000451716 SNED1Q8TER0 1413 aa13.68□□□□□ -0.22
COL27A1-202ENST00000451716 PPEF1O14829 653 aaPredicted RBP13.68□□□□□ -0.22
COL27A1-202ENST00000451716 HOXA10P31260 410 aaPredicted RBP13.68□□□□□ -0.22
COL27A1-202ENST00000451716 KARSQ15046 597 aaKnown RBP13.68□□□□□ -0.22
COL27A1-202ENST00000451716 C4orf32Q8N8J7 132 aa13.68□□□□□ -0.22
COL27A1-202ENST00000451716 TRIML1Q8N9V2 468 aa13.68□□□□□ -0.22
COL27A1-202ENST00000451716 CCDC112Q8NEF3 446 aa13.68□□□□□ -0.22
COL27A1-202ENST00000451716 PPP1R13BQ96KQ4 1090 aa13.68□□□□□ -0.22
COL27A1-202ENST00000451716 UBA5Q9GZZ9 404 aa13.68□□□□□ -0.22
COL27A1-202ENST00000451716 TCP11L1Q9NUJ3 509 aa13.68□□□□□ -0.22
COL27A1-202ENST00000451716 DACH1Q9UI36 760 aa13.68□□□□□ -0.22
COL27A1-202ENST00000451716 STXBP3O00186 592 aa13.67□□□□□ -0.22
COL27A1-202ENST00000451716 TRAPPC10P48553 1259 aa13.67□□□□□ -0.22
COL27A1-202ENST00000451716 SCNN1DP51172 638 aa13.67□□□□□ -0.22
COL27A1-202ENST00000451716 CUL4BQ13620 913 aa13.67□□□□□ -0.22
COL27A1-202ENST00000451716 E2F4Q16254 413 aa13.67□□□□□ -0.22
COL27A1-202ENST00000451716 NAV1Q8NEY1 1877 aa13.67□□□□□ -0.22
COL27A1-202ENST00000451716 GNAQP50148 359 aa13.67□□□□□ -0.22
COL27A1-202ENST00000451716 ADKP55263 362 aaKnown RBP13.67□□□□□ -0.22
COL27A1-202ENST00000451716 CERS5Q8N5B7 392 aa13.67□□□□□ -0.22
COL27A1-202ENST00000451716 IQUBQ8NA54 791 aa13.67□□□□□ -0.22
COL27A1-202ENST00000451716 BARHL2Q9NY43 387 aa13.67□□□□□ -0.22
COL27A1-202ENST00000451716 MAPK8IP1Q9UQF2 711 aa13.67□□□□□ -0.22
COL27A1-202ENST00000451716 M0R2N6 131 aa13.66□□□□□ -0.22
COL27A1-202ENST00000451716 TNNT3P45378 269 aaPredicted RBP13.66□□□□□ -0.22
COL27A1-202ENST00000451716 CCDC34Q96HJ3 373 aa13.66□□□□□ -0.22
COL27A1-202ENST00000451716 CRAMP1Q96RY5 1269 aa13.66□□□□□ -0.22
COL27A1-202ENST00000451716 MORC2Q9Y6X9 1032 aaPredicted RBP13.66□□□□□ -0.22
COL27A1-202ENST00000451716 FRMPD2Q68DX3 1309 aaPredicted RBP13.66□□□□□ -0.22
COL27A1-202ENST00000451716 USP17L5A8MUK1 530 aa13.66□□□□□ -0.22
COL27A1-202ENST00000451716 TEX33O43247 280 aa13.66□□□□□ -0.22
COL27A1-202ENST00000451716 PARP1P09874 1014 aaKnown RBP13.66□□□□□ -0.22
COL27A1-202ENST00000451716 PDXDC2PQ6P474 469 aa13.66□□□□□ -0.22
COL27A1-202ENST00000451716 NEDD1Q8NHV4 660 aa13.66□□□□□ -0.22
COL27A1-202ENST00000451716 EFCC1Q9HA90 598 aa13.66□□□□□ -0.22
COL27A1-202ENST00000451716 ZNF287Q9HBT7 754 aa13.66□□□□□ -0.22
COL27A1-202ENST00000451716 DDX4Q9NQI0 724 aaKnown RBP13.66□□□□□ -0.22
COL27A1-202ENST00000451716 SH3GLB2Q9NR46 395 aa13.66□□□□□ -0.22
COL27A1-202ENST00000451716 PAXBP1Q9Y5B6 917 aa13.66□□□□□ -0.22
COL27A1-202ENST00000451716 NAPAP54920 295 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 LRRC47Q8N1G4 583 aaKnown RBP13.65□□□□□ -0.22
COL27A1-202ENST00000451716 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.65□□□□□ -0.223e-9■□□□□ 11.3
COL27A1-202ENST00000451716 CTNND2Q9UQB3 1225 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 V9GYY5 206 aaPredicted RBP13.65□□□□□ -0.22
COL27A1-202ENST00000451716 CDK5RAP2Q96SN8 1893 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 GAKO14976 1311 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 SYNRGQ9UMZ2 1314 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 PPP1R3GB7ZBB8 358 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 CTIFO43310 598 aaKnown RBP13.65□□□□□ -0.22
COL27A1-202ENST00000451716 PLCG2P16885 1265 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 CCDC178Q5BJE1 867 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 MSL1Q68DK7 614 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 CREBRFQ8IUR6 639 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 RASSF8Q8NHQ8 419 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 TBC1D22AQ8WUA7 517 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 GSDMAQ96QA5 445 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 PIGSQ96S52 555 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 TSPYL1Q9H0U9 437 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 TTF2Q9UNY4 1162 aaKnown RBP13.65□□□□□ -0.22
COL27A1-202ENST00000451716 ERCC5P28715 1186 aaPredicted RBP13.65□□□□□ -0.22
COL27A1-202ENST00000451716 NBPF20Q3BBV1 942 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 DDX60LQ5H9U9 1706 aaKnown RBP13.65□□□□□ -0.22
COL27A1-202ENST00000451716 SYT10Q6XYQ8 523 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 COL23A1Q86Y22 540 aaPredicted RBP13.65□□□□□ -0.22
COL27A1-202ENST00000451716 SP8Q8IXZ3 490 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 CEP120Q8N960 986 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 FAM163AQ96GL9 167 aaPredicted RBP13.65□□□□□ -0.22
COL27A1-202ENST00000451716 ZC3H12CQ9C0D7 883 aaKnown RBP13.65□□□□□ -0.22
COL27A1-202ENST00000451716 KCNQ5Q9NR82 932 aa13.65□□□□□ -0.22
COL27A1-202ENST00000451716 NRDCO43847 1150 aa13.64□□□□□ -0.23
COL27A1-202ENST00000451716 LETM2Q2VYF4 491 aa13.64□□□□□ -0.23
COL27A1-202ENST00000451716 RRAGBQ5VZM2 374 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms