RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 HOXC10Q9NYD6 342 aa18.36■□□□□ 0.53
USP40-206ENST00000443711 CDC27P30260 824 aa18.35■□□□□ 0.53
USP40-206ENST00000443711 ADD1P35611 737 aaKnown RBP18.35■□□□□ 0.53
USP40-206ENST00000443711 CPLX2Q6PUV4 134 aaKnown RBP18.35■□□□□ 0.53
USP40-206ENST00000443711 TMTC3Q6ZXV5 915 aa18.35■□□□□ 0.53
USP40-206ENST00000443711 FAM43AQ8N2R8 423 aa18.35■□□□□ 0.53
USP40-206ENST00000443711 TMX3Q96JJ7 454 aa18.35■□□□□ 0.53
USP40-206ENST00000443711 SLF1Q9BQI6 1058 aa18.35■□□□□ 0.53
USP40-206ENST00000443711 ASCC2Q9H1I8 757 aaPredicted RBP18.35■□□□□ 0.53
USP40-206ENST00000443711 NCOA5Q9HCD5 579 aaKnown RBP18.35■□□□□ 0.53
USP40-206ENST00000443711 FBXO28Q9NVF7 368 aa18.35■□□□□ 0.53
USP40-206ENST00000443711 PARP14Q460N5 1801 aa18.35■□□□□ 0.53
USP40-206ENST00000443711 BAZ2BQ9UIF8 2168 aaKnown RBP18.34■□□□□ 0.53
USP40-206ENST00000443711 MYPNQ86TC9 1320 aa18.34■□□□□ 0.53
USP40-206ENST00000443711 RLFQ13129 1914 aa18.34■□□□□ 0.53
USP40-206ENST00000443711 IGF2BP3O00425 579 aaKnown RBP eCLIP18.34■□□□□ 0.53
USP40-206ENST00000443711 CPLX1O14810 134 aa18.34■□□□□ 0.53
USP40-206ENST00000443711 DSG3P32926 999 aa18.34■□□□□ 0.53
USP40-206ENST00000443711 SLC16A2P36021 539 aa18.34■□□□□ 0.53
USP40-206ENST00000443711 SCRN1Q12765 414 aa18.34■□□□□ 0.53
USP40-206ENST00000443711 SYDE2Q5VT97 1194 aa18.34■□□□□ 0.53
USP40-206ENST00000443711 SAMD1Q6SPF0 538 aaPredicted RBP18.34■□□□□ 0.53
USP40-206ENST00000443711 HSCBQ8IWL3 235 aa18.34■□□□□ 0.53
USP40-206ENST00000443711 NECAB1Q8N987 351 aa18.34■□□□□ 0.53
USP40-206ENST00000443711 GTF3C6Q969F1 213 aa18.34■□□□□ 0.53
USP40-206ENST00000443711 KIFC2Q96AC6 838 aa18.34■□□□□ 0.53
USP40-206ENST00000443711 P2RX7Q99572 595 aaKnown RBP18.34■□□□□ 0.53
USP40-206ENST00000443711 PPP1R9AQ9ULJ8 1098 aa18.34■□□□□ 0.53
USP40-206ENST00000443711 PLEKHA8P1O95397 391 aa18.33■□□□□ 0.52
USP40-206ENST00000443711 ALDH1A1P00352 501 aa18.33■□□□□ 0.52
USP40-206ENST00000443711 FDX1P10109 184 aa18.33■□□□□ 0.52
USP40-206ENST00000443711 SRBD1Q8N5C6 995 aaKnown RBP18.33■□□□□ 0.52
USP40-206ENST00000443711 SPZ1Q9BXG8 430 aa18.33■□□□□ 0.52
USP40-206ENST00000443711 PRR12Q9ULL5 1215 aa18.33■□□□□ 0.52
USP40-206ENST00000443711 K7ELQ4 463 aaPredicted RBP18.32■□□□□ 0.52
USP40-206ENST00000443711 TAF1CQ15572 869 aaPredicted RBP18.32■□□□□ 0.52
USP40-206ENST00000443711 ADGRF4Q8IZF3 695 aa18.32■□□□□ 0.52
USP40-206ENST00000443711 CMTR1Q8N1G2 835 aaKnown RBP18.32■□□□□ 0.52
USP40-206ENST00000443711 GTF3C2Q8WUA4 911 aaPredicted RBP18.32■□□□□ 0.52
USP40-206ENST00000443711 PARK7Q99497 189 aaKnown RBP18.32■□□□□ 0.52
USP40-206ENST00000443711 CPVLQ9H3G5 476 aa18.32■□□□□ 0.52
USP40-206ENST00000443711 RIOX1Q9H6W3 641 aa18.32■□□□□ 0.52
USP40-206ENST00000443711 VAT1LQ9HCJ6 419 aa18.32■□□□□ 0.52
USP40-206ENST00000443711 TSHZ2Q9NRE2 1034 aa18.32■□□□□ 0.52
USP40-206ENST00000443711 CTDP1Q9Y5B0 961 aaPredicted RBP18.32■□□□□ 0.52
USP40-206ENST00000443711 MYH6P13533 1939 aa18.31■□□□□ 0.52
USP40-206ENST00000443711 SPDYE16A6NNV3 312 aaPredicted RBP18.31■□□□□ 0.52
USP40-206ENST00000443711 ZBED4O75132 1171 aa18.31■□□□□ 0.52
USP40-206ENST00000443711 CDKL5O76039 1030 aa18.31■□□□□ 0.52
USP40-206ENST00000443711 IFNAR1P17181 557 aa18.31■□□□□ 0.52
USP40-206ENST00000443711 HERVK_113P62684 666 aa18.31■□□□□ 0.52
USP40-206ENST00000443711 LBX2Q6XYB7 198 aa18.31■□□□□ 0.52
USP40-206ENST00000443711 NBPF11Q86T75 865 aa18.31■□□□□ 0.52
USP40-206ENST00000443711 CCDC83Q8IWF9 413 aa18.31■□□□□ 0.52
USP40-206ENST00000443711 CCDC82Q8N4S0 544 aa18.31■□□□□ 0.52
USP40-206ENST00000443711 ATG4CQ96DT6 458 aa18.31■□□□□ 0.52
USP40-206ENST00000443711 JMJD4Q9H9V9 463 aa18.31■□□□□ 0.52
USP40-206ENST00000443711 ADAMTS5Q9UNA0 930 aa18.31■□□□□ 0.52
USP40-206ENST00000443711 THSD7BQ9C0I4 1608 aa18.31■□□□□ 0.52
USP40-206ENST00000443711 VWA5AO00534 786 aa18.3■□□□□ 0.52
USP40-206ENST00000443711 CYTH3O43739 400 aa18.3■□□□□ 0.52
USP40-206ENST00000443711 CYP2C8P10632 490 aa18.3■□□□□ 0.52
USP40-206ENST00000443711 FUT2Q10981 343 aa18.3■□□□□ 0.52
USP40-206ENST00000443711 NTRK3Q16288 839 aa18.3■□□□□ 0.52
USP40-206ENST00000443711 SLC35G1Q2M3R5 365 aa18.3■□□□□ 0.52
USP40-206ENST00000443711 MB21D1Q8N884 522 aa18.3■□□□□ 0.52
USP40-206ENST00000443711 SMCR8Q8TEV9 937 aaPredicted RBP18.3■□□□□ 0.52
USP40-206ENST00000443711 RRP36Q96EU6 259 aaKnown RBP18.3■□□□□ 0.52
USP40-206ENST00000443711 ZFYVE28Q9HCC9 887 aa18.3■□□□□ 0.52
USP40-206ENST00000443711 COL11A1P12107 1806 aaPredicted RBP18.29■□□□□ 0.52
USP40-206ENST00000443711 GCLCP48506 637 aaPredicted RBP18.29■□□□□ 0.52
USP40-206ENST00000443711 AKAP17AQ02040 695 aaKnown RBP18.29■□□□□ 0.52
USP40-206ENST00000443711 SSRP1Q08945 709 aaKnown RBP18.29■□□□□ 0.52
USP40-206ENST00000443711 BECN1Q14457 450 aa18.29■□□□□ 0.52
USP40-206ENST00000443711 TRIM22Q8IYM9 498 aa18.29■□□□□ 0.52
USP40-206ENST00000443711 MTMR8Q96EF0 704 aa18.29■□□□□ 0.52
USP40-206ENST00000443711 LLPHQ9BRT6 129 aaKnown RBP18.29■□□□□ 0.52
USP40-206ENST00000443711 RANBP17Q9H2T7 1088 aaKnown RBP18.29■□□□□ 0.52
USP40-206ENST00000443711 SLC38A10Q9HBR0 1119 aa18.29■□□□□ 0.52
USP40-206ENST00000443711 RBM27Q9P2N5 1060 aaKnown RBP18.29■□□□□ 0.52
USP40-206ENST00000443711 V9GY48 417 aaPredicted RBP18.29■□□□□ 0.52
USP40-206ENST00000443711 CNTNAP5Q8WYK1 1306 aa18.28■□□□□ 0.52
USP40-206ENST00000443711 PNMA6FA0A0J9YX94 578 aa18.28■□□□□ 0.52
USP40-206ENST00000443711 PRPF3O43395 683 aaKnown RBP18.28■□□□□ 0.52
USP40-206ENST00000443711 CA12O43570 354 aa18.28■□□□□ 0.52
USP40-206ENST00000443711 ANP32AP39687 249 aaKnown RBP18.28■□□□□ 0.52
USP40-206ENST00000443711 ST3GAL1Q11201 340 aa18.28■□□□□ 0.52
USP40-206ENST00000443711 CDC37Q16543 378 aaPredicted RBP18.28■□□□□ 0.52
USP40-206ENST00000443711 DNAJC5GQ8N7S2 189 aa18.28■□□□□ 0.52
USP40-206ENST00000443711 PIBF1Q8WXW3 757 aa18.28■□□□□ 0.52
USP40-206ENST00000443711 PHKBQ93100 1093 aa18.28■□□□□ 0.52
USP40-206ENST00000443711 PIGSQ96S52 555 aa18.28■□□□□ 0.52
USP40-206ENST00000443711 RNF26Q9BY78 433 aaPredicted RBP18.28■□□□□ 0.52
USP40-206ENST00000443711 SEC63Q9UGP8 760 aaKnown RBP18.28■□□□□ 0.52
USP40-206ENST00000443711 PNMA2Q9UL42 364 aa18.28■□□□□ 0.52
USP40-206ENST00000443711 RABGAP1Q9Y3P9 1069 aa18.28■□□□□ 0.52
USP40-206ENST00000443711 ZBTB5O15062 677 aa18.27■□□□□ 0.52
USP40-206ENST00000443711 FMNL1O95466 1100 aaPredicted RBP18.27■□□□□ 0.52
USP40-206ENST00000443711 CTDNEP1O95476 244 aa18.27■□□□□ 0.52
USP40-206ENST00000443711 SNAP25P60880 206 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms