RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 PBX4Q9BYU1 374 aa17.38■□□□□ 0.37
HMGN1-208ENST00000443046 KANSL2Q9H9L4 492 aa17.38■□□□□ 0.37
HMGN1-208ENST00000443046 ELP1O95163 1332 aa17.38■□□□□ 0.37
HMGN1-208ENST00000443046 GREB1LQ9C091 1923 aaPredicted RBP17.37■□□□□ 0.37
HMGN1-208ENST00000443046 GOLIM4O00461 696 aa17.37■□□□□ 0.37
HMGN1-208ENST00000443046 DUSP11O75319 330 aaKnown RBP17.37■□□□□ 0.37
HMGN1-208ENST00000443046 PBX2P40425 430 aa17.37■□□□□ 0.37
HMGN1-208ENST00000443046 SAMD1Q6SPF0 538 aaPredicted RBP17.37■□□□□ 0.37
HMGN1-208ENST00000443046 RHPN1Q8TCX5 695 aa17.37■□□□□ 0.37
HMGN1-208ENST00000443046 IL1RAPL2Q9NP60 686 aa17.37■□□□□ 0.37
HMGN1-208ENST00000443046 FAM184BQ9ULE4 1060 aa17.37■□□□□ 0.37
HMGN1-208ENST00000443046 CYP2D7A0A087X1C5 515 aa17.36■□□□□ 0.37
HMGN1-208ENST00000443046 MYADML2A6NDP7 307 aa17.36■□□□□ 0.37
HMGN1-208ENST00000443046 PPIGQ13427 754 aaKnown RBP eCLIP17.36■□□□□ 0.375e-19■■□□□ 12
HMGN1-208ENST00000443046 SLFNL1Q499Z3 407 aa17.36■□□□□ 0.37
HMGN1-208ENST00000443046 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.36■□□□□ 0.37
HMGN1-208ENST00000443046 ZNF467Q7Z7K2 595 aaPredicted RBP17.36■□□□□ 0.37
HMGN1-208ENST00000443046 ITPRIPQ8IWB1 547 aa17.36■□□□□ 0.37
HMGN1-208ENST00000443046 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.36■□□□□ 0.37
HMGN1-208ENST00000443046 MROH7Q68CQ1 1323 aa17.36■□□□□ 0.37
HMGN1-208ENST00000443046 ZBED9Q6R2W3 1325 aa17.36■□□□□ 0.37
HMGN1-208ENST00000443046 GRXCR1A8MXD5 290 aa17.35■□□□□ 0.37
HMGN1-208ENST00000443046 USP17L12C9JPN9 530 aa17.35■□□□□ 0.37
HMGN1-208ENST00000443046 USP17L21D6R901 530 aa17.35■□□□□ 0.37
HMGN1-208ENST00000443046 CCER2I3L3R5 266 aa17.35■□□□□ 0.37
HMGN1-208ENST00000443046 ADCY6O43306 1168 aa17.35■□□□□ 0.37
HMGN1-208ENST00000443046 MBD4O95243 580 aa17.35■□□□□ 0.37
HMGN1-208ENST00000443046 ADD2P35612 726 aa17.35■□□□□ 0.37
HMGN1-208ENST00000443046 NKX3-2P78367 333 aa17.35■□□□□ 0.37
HMGN1-208ENST00000443046 FAM83BQ5T0W9 1011 aa17.35■□□□□ 0.37
HMGN1-208ENST00000443046 FTSJ3Q8IY81 847 aaKnown RBP17.35■□□□□ 0.37
HMGN1-208ENST00000443046 ASB2Q96Q27 587 aa17.35■□□□□ 0.37
HMGN1-208ENST00000443046 TEX13BQ9BXU2 312 aa17.35■□□□□ 0.37
HMGN1-208ENST00000443046 UPF3AQ9H1J1 476 aaKnown RBP17.35■□□□□ 0.37
HMGN1-208ENST00000443046 GOPCQ9HD26 462 aa17.35■□□□□ 0.37
HMGN1-208ENST00000443046 RIPK3Q9Y572 518 aa17.35■□□□□ 0.37
HMGN1-208ENST00000443046 ARVCFO00192 962 aa17.34■□□□□ 0.37
HMGN1-208ENST00000443046 ATP2A1O14983 1001 aa17.34■□□□□ 0.37
HMGN1-208ENST00000443046 MCM3APO60318 1980 aa17.34■□□□□ 0.37
HMGN1-208ENST00000443046 ASGR1P07306 291 aa17.34■□□□□ 0.37
HMGN1-208ENST00000443046 CSF2RAP15509 400 aa17.34■□□□□ 0.37
HMGN1-208ENST00000443046 GJA9P57773 515 aa17.34■□□□□ 0.37
HMGN1-208ENST00000443046 IRX5P78411 483 aaPredicted RBP17.34■□□□□ 0.37
HMGN1-208ENST00000443046 ADGRE1Q14246 886 aa17.34■□□□□ 0.37
HMGN1-208ENST00000443046 HSP90AB4PQ58FF6 505 aa17.34■□□□□ 0.37
HMGN1-208ENST00000443046 CCDC174Q6PII3 467 aa17.34■□□□□ 0.37
HMGN1-208ENST00000443046 FGD4Q96M96 766 aa17.34■□□□□ 0.37
HMGN1-208ENST00000443046 GLT1D1Q96MS3 346 aa17.34■□□□□ 0.37
HMGN1-208ENST00000443046 GAS2L1Q99501 681 aaPredicted RBP17.34■□□□□ 0.37
HMGN1-208ENST00000443046 DNAJC2Q99543 621 aaKnown RBP17.34■□□□□ 0.37
HMGN1-208ENST00000443046 PRDM12Q9H4Q4 367 aa17.34■□□□□ 0.37
HMGN1-208ENST00000443046 CTAGE5O15320 804 aa17.33■□□□□ 0.36
HMGN1-208ENST00000443046 ACVR2BQ13705 512 aa17.33■□□□□ 0.36
HMGN1-208ENST00000443046 CTR9Q6PD62 1173 aa17.33■□□□□ 0.36
HMGN1-208ENST00000443046 ZNF365Q70YC5 407 aa17.33■□□□□ 0.36
HMGN1-208ENST00000443046 FAM126BQ8IXS8 530 aa17.33■□□□□ 0.36
HMGN1-208ENST00000443046 CLASRPQ8N2M8 674 aaKnown RBP17.33■□□□□ 0.36
HMGN1-208ENST00000443046 TMEM199Q8N511 208 aa17.33■□□□□ 0.36
HMGN1-208ENST00000443046 PCSK9Q8NBP7 692 aaKnown RBP17.33■□□□□ 0.36
HMGN1-208ENST00000443046 SLF1Q9BQI6 1058 aa17.33■□□□□ 0.36
HMGN1-208ENST00000443046 PAG1Q9NWQ8 432 aa17.33■□□□□ 0.36
HMGN1-208ENST00000443046 THEGQ9P2T0 379 aa17.33■□□□□ 0.36
HMGN1-208ENST00000443046 ZHX1Q9UKY1 873 aaPredicted RBP17.33■□□□□ 0.36
HMGN1-208ENST00000443046 A0A0U1RQG5 324 aaPredicted RBP17.32■□□□□ 0.36
HMGN1-208ENST00000443046 CD4P01730 458 aa17.32■□□□□ 0.36
HMGN1-208ENST00000443046 UBE3CQ15386 1083 aa17.32■□□□□ 0.36
HMGN1-208ENST00000443046 SNRNP48Q6IEG0 339 aaKnown RBP17.32■□□□□ 0.36
HMGN1-208ENST00000443046 PSRC1Q6PGN9 363 aaPredicted RBP17.32■□□□□ 0.36
HMGN1-208ENST00000443046 HERVK_113Q902F9 699 aa17.32■□□□□ 0.36
HMGN1-208ENST00000443046 DDX11Q96FC9 970 aa17.32■□□□□ 0.36
HMGN1-208ENST00000443046 KATNBL1Q9H079 304 aa17.32■□□□□ 0.36
HMGN1-208ENST00000443046 ABHD16BQ9H3Z7 469 aa17.32■□□□□ 0.36
HMGN1-208ENST00000443046 GBF1Q92538 1859 aa17.31■□□□□ 0.36
HMGN1-208ENST00000443046 CHGBP05060 677 aa17.31■□□□□ 0.36
HMGN1-208ENST00000443046 C6orf222P0C671 652 aaPredicted RBP17.31■□□□□ 0.36
HMGN1-208ENST00000443046 ACRP10323 421 aa17.31■□□□□ 0.36
HMGN1-208ENST00000443046 MRPS5P82675 430 aaKnown RBP17.31■□□□□ 0.36
HMGN1-208ENST00000443046 CCDC144BQ3MJ40 725 aa17.31■□□□□ 0.36
HMGN1-208ENST00000443046 CCDC129Q6ZRS4 1044 aa17.31■□□□□ 0.36
HMGN1-208ENST00000443046 PRPF38AQ8NAV1 312 aaKnown RBP17.31■□□□□ 0.36
HMGN1-208ENST00000443046 SLC43A3Q8NBI5 491 aa17.31■□□□□ 0.36
HMGN1-208ENST00000443046 ADAMTS19Q8TE59 1207 aa17.31■□□□□ 0.36
HMGN1-208ENST00000443046 PPM1EQ8WY54 764 aa17.31■□□□□ 0.36
HMGN1-208ENST00000443046 KIF1BPQ96EK5 621 aa17.31■□□□□ 0.36
HMGN1-208ENST00000443046 NUP88Q99567 741 aaPredicted RBP17.31■□□□□ 0.36
HMGN1-208ENST00000443046 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.31■□□□□ 0.36
HMGN1-208ENST00000443046 CXXC1Q9P0U4 656 aaPredicted RBP17.31■□□□□ 0.36
HMGN1-208ENST00000443046 NYAP2Q9P242 653 aa17.31■□□□□ 0.36
HMGN1-208ENST00000443046 RAPGEFL1Q9UHV5 662 aa17.31■□□□□ 0.36
HMGN1-208ENST00000443046 MYH7P12883 1935 aa17.31■□□□□ 0.36
HMGN1-208ENST00000443046 ATP5JP18859 108 aa17.3■□□□□ 0.36
HMGN1-208ENST00000443046 RAB30Q15771 203 aa17.3■□□□□ 0.36
HMGN1-208ENST00000443046 GNASQ5JWF2 1037 aa17.3■□□□□ 0.36
HMGN1-208ENST00000443046 AMOTL1Q8IY63 956 aa17.3■□□□□ 0.36
HMGN1-208ENST00000443046 IL23AQ9NPF7 189 aa17.3■□□□□ 0.36
HMGN1-208ENST00000443046 F5H6K3 240 aa17.29■□□□□ 0.36
HMGN1-208ENST00000443046 IFIT2P09913 472 aaKnown RBP17.29■□□□□ 0.36
HMGN1-208ENST00000443046 RASA1P20936 1047 aa17.29■□□□□ 0.36
HMGN1-208ENST00000443046 KLRC3Q07444 240 aa17.29■□□□□ 0.36
HMGN1-208ENST00000443046 HAUS7Q99871 368 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms