RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 Q7L0L9 218 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 CDC37L1Q7L3B6 337 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 SDR16C5Q8N3Y7 309 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 ATP11CQ8NB49 1132 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 SMARCC2Q8TAQ2 1214 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 SH3TC2Q8TF17 1288 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 MARVELD3Q96A59 401 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 KCNK17Q96T54 332 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 RHOXF2Q9BQY4 288 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 ZCWPW1Q9H0M4 648 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 ATP6V0A4Q9HBG4 840 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 SLTMQ9NWH9 1034 aaKnown RBP eCLIP3.1□□□□□ -1.91
LIG4-203ENST00000442234 DDX19BQ9UMR2 479 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 THRAP3Q9Y2W1 955 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 CTDP1Q9Y5B0 961 aaPredicted RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 CNTRLQ7Z7A1 2325 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 PRUNE2Q8WUY3 3088 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 CDC42BPAQ5VT25 1732 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 NCOR2Q9Y618 2525 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 INO80Q9ULG1 1556 aaPredicted RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 MED14O60244 1454 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 NKTRP30414 1462 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 EIF4E1BA6NMX2 242 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 SNAP23O00161 211 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 ZFXP17010 805 aaPredicted RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 CACNB3P54284 484 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 ZBED6P86452 979 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 DMPKQ09013 629 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 TCP10Q12799 353 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 DYNC1I2Q13409 638 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 TSR1Q2NL82 804 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 CCDC38Q502W7 563 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 BMP2KLQ5H9B9 411 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 RIC3Q7Z5B4 369 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 CHD1LQ86WJ1 897 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 IQCF2Q8IXL9 164 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 CCDC150Q8NCX0 1101 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 LRRN4CLQ8ND94 238 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 CCDC12Q8WUD4 166 aaPredicted RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 IP6K1Q92551 441 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 RABGGTAQ92696 567 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 HOOK2Q96ED9 719 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 RBM17Q96I25 401 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 FUT8Q9BYC5 575 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 DNAJC25Q9H1X3 360 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 CBX8Q9HC52 389 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 GGA3Q9NZ52 723 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 SUN2Q9UH99 717 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 PUF60Q9UHX1 559 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 MAST1Q9Y2H9 1570 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 PCDH11XQ9BZA7 1347 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 PCDH11YQ9BZA8 1340 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 hCG_2014768A0A024R1R8 64 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 M0R2C6 588 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 N4BP1O75113 896 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 TADA3O75528 432 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 LUC7L3O95232 432 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 CYP2E1P05181 493 aaPredicted RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 HNRNPCP07910 306 aaKnown RBP eCLIP3.1□□□□□ -1.91
LIG4-203ENST00000442234 VIL1P09327 827 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 CLTAP09496 248 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 ZNF24P17028 368 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 MAGEA10P43363 369 aaPredicted RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 PSMC4P43686 418 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 NUCB1Q02818 461 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 ADCY1Q08828 1119 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 MVPQ14764 893 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 ARID5BQ14865 1188 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 ZYXQ15942 572 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 AMHR2Q16671 573 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 CCDC93Q567U6 631 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 CWF19L1Q69YN2 538 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 NAA16Q6N069 864 aaPredicted RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 ZNF365Q70YC5 407 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 PNMA8AQ86V59 439 aaPredicted RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 SPATS2Q86XZ4 545 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 LMNTD2Q8IXW0 634 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 UHMK1Q8TAS1 419 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 TBC1D5Q92609 795 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 FAM89AQ96GI7 184 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 NLRP3Q96P20 1036 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 FAM167BQ9BTA0 163 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 MMTAG2Q9BU76 263 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 CAPS2Q9BXY5 557 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 DNAAF2Q9NVR5 837 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 MYO1AQ9UBC5 1043 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 CNOT7Q9UIV1 285 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 PNMA2Q9UL42 364 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 PTCH1Q13635 1447 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 COL22A1Q8NFW1 1626 aaPredicted RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 UFL1O94874 794 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 PRKAR2BP31323 418 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 PCK1P35558 622 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 TXLNAP40222 546 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 SH3BGRP55822 239 aaPredicted RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 SLC7A5Q01650 507 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 IFFO1Q0D2I5 559 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 SLMAPQ14BN4 828 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 CDC37Q16543 378 aaPredicted RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 SPECC1Q5M775 1068 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms