RNA–Protein interactions for RNA: ENST00000439128.6

NEK1-201, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,653 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-201ENST00000439128 SLC7A3Q8WY07 619 aa13.43□□□□□ -0.26
NEK1-201ENST00000439128 PRDM15P57071 1507 aaPredicted RBP13.42□□□□□ -0.26
NEK1-201ENST00000439128 A0A0D9SFI3 127 aa13.42□□□□□ -0.26
NEK1-201ENST00000439128 ASIC2Q16515 512 aa13.42□□□□□ -0.26
NEK1-201ENST00000439128 BRIP1Q9BX63 1249 aa13.42□□□□□ -0.26
NEK1-201ENST00000439128 ELP3Q9H9T3 547 aa13.42□□□□□ -0.26
NEK1-201ENST00000439128 COPRSQ9NQ92 184 aa13.42□□□□□ -0.26
NEK1-201ENST00000439128 HOXC10Q9NYD6 342 aa13.42□□□□□ -0.26
NEK1-201ENST00000439128 POLIQ9UNA4 740 aa13.42□□□□□ -0.26
NEK1-201ENST00000439128 USP17L5A8MUK1 530 aa13.42□□□□□ -0.26
NEK1-201ENST00000439128 FAM160B2Q86V87 743 aa13.42□□□□□ -0.26
NEK1-201ENST00000439128 KIF1BO60333 1816 aa13.42□□□□□ -0.26
NEK1-201ENST00000439128 TNPO2O14787 897 aaKnown RBP13.42□□□□□ -0.26
NEK1-201ENST00000439128 GPSM2P81274 684 aa13.42□□□□□ -0.26
NEK1-201ENST00000439128 FAM49AQ9H0Q0 323 aaPredicted RBP13.42□□□□□ -0.26
NEK1-201ENST00000439128 VPS16Q9H269 839 aa13.42□□□□□ -0.26
NEK1-201ENST00000439128 BLZF1Q9H2G9 400 aa13.42□□□□□ -0.26
NEK1-201ENST00000439128 MED23Q9ULK4 1368 aa13.42□□□□□ -0.26
NEK1-201ENST00000439128 CUTAO60888 179 aa13.42□□□□□ -0.26
NEK1-201ENST00000439128 ELF1P32519 619 aa13.42□□□□□ -0.26
NEK1-201ENST00000439128 ATL3Q6DD88 541 aa13.42□□□□□ -0.26
NEK1-201ENST00000439128 SND1Q7KZF4 910 aaKnown RBP eCLIP13.42□□□□□ -0.26
NEK1-201ENST00000439128 LBHD1Q9BQE6 289 aaPredicted RBP13.42□□□□□ -0.26
NEK1-201ENST00000439128 FAM170AA1A519 330 aa13.41□□□□□ -0.26
NEK1-201ENST00000439128 CYP19A1P11511 503 aaPredicted RBP13.41□□□□□ -0.26
NEK1-201ENST00000439128 ATP2A2P16615 1042 aaKnown RBP13.41□□□□□ -0.26
NEK1-201ENST00000439128 TAF1CQ15572 869 aaPredicted RBP13.41□□□□□ -0.26
NEK1-201ENST00000439128 ARHGAP44Q17R89 818 aa13.41□□□□□ -0.26
NEK1-201ENST00000439128 VWA3BQ502W6 1294 aa13.41□□□□□ -0.26
NEK1-201ENST00000439128 STAMQ92783 540 aa13.41□□□□□ -0.26
NEK1-201ENST00000439128 CDHR1Q96JP9 859 aa13.41□□□□□ -0.26
NEK1-201ENST00000439128 ZNF830Q96NB3 372 aaPredicted RBP13.41□□□□□ -0.26
NEK1-201ENST00000439128 CCDC77Q9BR77 488 aa13.41□□□□□ -0.26
NEK1-201ENST00000439128 PRKAB2O43741 272 aa13.41□□□□□ -0.26
NEK1-201ENST00000439128 DLATP10515 647 aaKnown RBP13.41□□□□□ -0.26
NEK1-201ENST00000439128 PCP11498 1178 aaKnown RBP13.41□□□□□ -0.26
NEK1-201ENST00000439128 SYT1P21579 422 aa13.41□□□□□ -0.26
NEK1-201ENST00000439128 LCORLQ8N3X6 602 aa13.41□□□□□ -0.26
NEK1-201ENST00000439128 KRT86O43790 486 aa13.41□□□□□ -0.26
NEK1-201ENST00000439128 DTNBO60941 627 aa13.41□□□□□ -0.26
NEK1-201ENST00000439128 NFX1Q12986 1120 aaKnown RBP13.41□□□□□ -0.26
NEK1-201ENST00000439128 TTC30AQ86WT1 665 aa13.41□□□□□ -0.26
NEK1-201ENST00000439128 TTLL11Q8NHH1 800 aa13.41□□□□□ -0.26
NEK1-201ENST00000439128 CNOT7Q9UIV1 285 aaKnown RBP13.41□□□□□ -0.26
NEK1-201ENST00000439128 BCRP11274 1271 aa13.41□□□□□ -0.26
NEK1-201ENST00000439128 RBM10P98175 930 aaKnown RBP13.41□□□□□ -0.26
NEK1-201ENST00000439128 SPATA31A1Q5TZJ5 1347 aa13.41□□□□□ -0.26
NEK1-201ENST00000439128 PI16Q6UXB8 463 aa13.41□□□□□ -0.26
NEK1-201ENST00000439128 KIF9Q9HAQ2 790 aa13.41□□□□□ -0.26
NEK1-201ENST00000439128 EXOC8Q8IYI6 725 aa13.4□□□□□ -0.26
NEK1-201ENST00000439128 CD209Q9NNX6 404 aa13.4□□□□□ -0.26
NEK1-201ENST00000439128 MTUS1Q9ULD2 1270 aa13.4□□□□□ -0.26
NEK1-201ENST00000439128 SPDYE16A6NNV3 312 aaPredicted RBP13.4□□□□□ -0.26
NEK1-201ENST00000439128 EIF2AK2P19525 551 aaKnown RBP13.4□□□□□ -0.26
NEK1-201ENST00000439128 SPDYE2Q495Y8 402 aa13.4□□□□□ -0.26
NEK1-201ENST00000439128 FAM178BQ8IXR5 827 aa13.4□□□□□ -0.26
NEK1-201ENST00000439128 GCNAQ96QF7 691 aa13.4□□□□□ -0.26
NEK1-201ENST00000439128 HESX1Q9UBX0 185 aa13.4□□□□□ -0.26
NEK1-201ENST00000439128 PAK1Q13153 545 aa13.4□□□□□ -0.26
NEK1-201ENST00000439128 PPP2R5AQ15172 486 aa13.4□□□□□ -0.26
NEK1-201ENST00000439128 RNF207Q6ZRF8 634 aa13.4□□□□□ -0.26
NEK1-201ENST00000439128 GPIHBP1Q8IV16 184 aa13.4□□□□□ -0.26
NEK1-201ENST00000439128 CELF1Q92879 486 aaKnown RBP13.4□□□□□ -0.26
NEK1-201ENST00000439128 PPP1R9BQ96SB3 815 aa13.4□□□□□ -0.26
NEK1-201ENST00000439128 GUCA1BQ9UMX6 200 aa13.4□□□□□ -0.26
NEK1-201ENST00000439128 RIPOR2Q9Y4F9 1068 aa13.4□□□□□ -0.26
NEK1-201ENST00000439128 ZSCAN23Q3MJ62 389 aa13.4□□□□□ -0.26
NEK1-201ENST00000439128 PGBD1Q96JS3 809 aa13.4□□□□□ -0.26
NEK1-201ENST00000439128 TLR7Q9NYK1 1049 aaKnown RBP13.4□□□□□ -0.26
NEK1-201ENST00000439128 CELF2O95319 508 aaKnown RBP13.39□□□□□ -0.27
NEK1-201ENST00000439128 KCNA4P22459 653 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 NACC1Q96RE7 527 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 ZNRF3Q9ULT6 936 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 MINPP1Q9UNW1 487 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 SHROOM2Q13796 1616 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 M0R2C6 588 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 OR52Z1P0C646 297 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 TMEM179Q6ZVK1 233 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 PIGSQ96S52 555 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 GPR108Q9NPR9 543 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 DBNLQ9UJU6 430 aaKnown RBP13.39□□□□□ -0.27
NEK1-201ENST00000439128 TYW5A2RUC4 315 aaKnown RBP13.39□□□□□ -0.27
NEK1-201ENST00000439128 CRCPO75575 148 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 SLC15A2Q16348 729 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 MTERF2Q49AM1 385 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 ARMCX5Q6P1M9 558 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 SP8Q8IXZ3 490 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 SH3RF3Q8TEJ3 882 aaPredicted RBP13.39□□□□□ -0.27
NEK1-201ENST00000439128 MMP19Q99542 508 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 SLITRK6Q9H5Y7 841 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 RIMBP3CA6NJZ7 1639 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 RIMBP3BA6NNM3 1639 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 RIMBP3Q9UFD9 1639 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 SYNJ2BP-COX16A0A087WUM0 186 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 DPEP1P16444 411 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 SPP2Q13103 211 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 RC3H1Q5TC82 1133 aaKnown RBP13.39□□□□□ -0.27
NEK1-201ENST00000439128 SLF1Q9BQI6 1058 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 COX16Q9P0S2 106 aa13.39□□□□□ -0.27
NEK1-201ENST00000439128 NOC2LQ9Y3T9 749 aaKnown RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms