RNA–Protein interactions for RNA: ENST00000425413.5

UBR4-207, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 2,954 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-207ENST00000425413 PCDHAC2Q9Y5I4 1007 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 TAF1LQ8IZX4 1826 aa13.11□□□□□ -0.31
UBR4-207ENST00000425413 KIAA1551Q9HCM1 1747 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 SMCO2A6NFE2 343 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 AKR1B1P15121 316 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 E2F4Q16254 413 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 DTHD1Q6ZMT9 781 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 C15orf52Q6ZUT6 534 aaKnown RBP13.1□□□□□ -0.31
UBR4-207ENST00000425413 TRIML1Q8N9V2 468 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 COA7Q96BR5 231 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 TMEM260Q9NX78 707 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 ZNF215Q9UL58 517 aaPredicted RBP13.1□□□□□ -0.31
UBR4-207ENST00000425413 PAXBP1Q9Y5B6 917 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 CCDC88AQ3V6T2 1871 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 SPDYE4A6NLX3 237 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 CCNT1O60563 726 aaKnown RBP13.1□□□□□ -0.31
UBR4-207ENST00000425413 PLCG2P16885 1265 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 TRAPPC10P48553 1259 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 TCP10Q12799 353 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 PDXDC2PQ6P474 469 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 COL23A1Q86Y22 540 aaPredicted RBP13.1□□□□□ -0.31
UBR4-207ENST00000425413 PDCL2Q8N4E4 241 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 C4orf32Q8N8J7 132 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 NEDD1Q8NHV4 660 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 KIF18AQ8NI77 898 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 DESI2Q9BSY9 194 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 USP40Q9NVE5 1235 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 SEC63Q9UGP8 760 aaKnown RBP13.1□□□□□ -0.31
UBR4-207ENST00000425413 SNED1Q8TER0 1413 aa13.1□□□□□ -0.31
UBR4-207ENST00000425413 PPP1R3GB7ZBB8 358 aa13.09□□□□□ -0.31
UBR4-207ENST00000425413 UBA7P41226 1012 aa13.09□□□□□ -0.31
UBR4-207ENST00000425413 NCBP1Q09161 790 aaKnown RBP13.09□□□□□ -0.31
UBR4-207ENST00000425413 SLC27A3Q5K4L6 730 aa13.09□□□□□ -0.31
UBR4-207ENST00000425413 SPECC1LQ69YQ0 1117 aa13.09□□□□□ -0.31
UBR4-207ENST00000425413 ELOA2Q8IYF1 753 aaPredicted RBP13.09□□□□□ -0.31
UBR4-207ENST00000425413 ANKS1AQ92625 1134 aa13.09□□□□□ -0.31
UBR4-207ENST00000425413 CCDC94Q9BW85 323 aaPredicted RBP13.09□□□□□ -0.31
UBR4-207ENST00000425413 ROBO3Q96MS0 1386 aa13.09□□□□□ -0.31
UBR4-207ENST00000425413 MMP10P09238 476 aa13.09□□□□□ -0.31
UBR4-207ENST00000425413 HOXA10P31260 410 aaPredicted RBP13.09□□□□□ -0.31
UBR4-207ENST00000425413 TXLNAP40222 546 aa13.09□□□□□ -0.31
UBR4-207ENST00000425413 CCDC148Q8NFR7 591 aa13.09□□□□□ -0.31
UBR4-207ENST00000425413 TBC1D22AQ8WUA7 517 aa13.09□□□□□ -0.31
UBR4-207ENST00000425413 RRP36Q96EU6 259 aaKnown RBP13.09□□□□□ -0.31
UBR4-207ENST00000425413 GSDMAQ96QA5 445 aa13.09□□□□□ -0.31
UBR4-207ENST00000425413 CRAMP1Q96RY5 1269 aa13.09□□□□□ -0.31
UBR4-207ENST00000425413 PES1O00541 588 aaKnown RBP13.08□□□□□ -0.31
UBR4-207ENST00000425413 SLC16A2P36021 539 aa13.08□□□□□ -0.31
UBR4-207ENST00000425413 SHROOM1Q2M3G4 852 aaPredicted RBP13.08□□□□□ -0.31
UBR4-207ENST00000425413 SOGA3Q5TF21 947 aa13.08□□□□□ -0.31
UBR4-207ENST00000425413 SPATA1Q5VX52 437 aa13.08□□□□□ -0.31
UBR4-207ENST00000425413 SLF2Q8IX21 1173 aa13.08□□□□□ -0.31
UBR4-207ENST00000425413 VPS16Q9H269 839 aa13.08□□□□□ -0.31
UBR4-207ENST00000425413 TCP11L1Q9NUJ3 509 aa13.08□□□□□ -0.31
UBR4-207ENST00000425413 PODXL2Q9NZ53 605 aa13.08□□□□□ -0.31
UBR4-207ENST00000425413 DNAI1Q9UI46 699 aa13.08□□□□□ -0.31
UBR4-207ENST00000425413 APBA3O96018 575 aa13.08□□□□□ -0.32
UBR4-207ENST00000425413 ERCC5P28715 1186 aaPredicted RBP13.08□□□□□ -0.32
UBR4-207ENST00000425413 RBM5P52756 815 aaKnown RBP eCLIP13.08□□□□□ -0.32
UBR4-207ENST00000425413 NFIAQ12857 509 aa13.08□□□□□ -0.32
UBR4-207ENST00000425413 MTF1Q14872 753 aa13.08□□□□□ -0.32
UBR4-207ENST00000425413 CCDC178Q5BJE1 867 aa13.08□□□□□ -0.32
UBR4-207ENST00000425413 KIAA0825Q8IV33 1275 aa13.08□□□□□ -0.32
UBR4-207ENST00000425413 BAG1Q99933 345 aaPredicted RBP13.08□□□□□ -0.32
UBR4-207ENST00000425413 ATP6V0A2Q9Y487 856 aa13.08□□□□□ -0.32
UBR4-207ENST00000425413 SBF2Q86WG5 1849 aa13.08□□□□□ -0.32
UBR4-207ENST00000425413 TRIM49BA6NDI0 452 aa13.08□□□□□ -0.32
UBR4-207ENST00000425413 RPN1P04843 607 aaKnown RBP13.08□□□□□ -0.32
UBR4-207ENST00000425413 TOGARAM2Q6ZUX3 1019 aa13.08□□□□□ -0.32
UBR4-207ENST00000425413 ZFPM1Q8IX07 1006 aa13.08□□□□□ -0.32
UBR4-207ENST00000425413 SP8Q8IXZ3 490 aa13.08□□□□□ -0.32
UBR4-207ENST00000425413 SH3GLB2Q9NR46 395 aa13.08□□□□□ -0.32
UBR4-207ENST00000425413 LY75O60449 1722 aa13.07□□□□□ -0.32
UBR4-207ENST00000425413 M0R2N6 131 aa13.07□□□□□ -0.32
UBR4-207ENST00000425413 CTIFO43310 598 aaKnown RBP13.07□□□□□ -0.32
UBR4-207ENST00000425413 SRGNP10124 158 aa13.07□□□□□ -0.32
UBR4-207ENST00000425413 TECP42680 631 aa13.07□□□□□ -0.32
UBR4-207ENST00000425413 TTBK2Q6IQ55 1244 aa13.07□□□□□ -0.32
UBR4-207ENST00000425413 TC2NQ8N9U0 490 aa13.07□□□□□ -0.32
UBR4-207ENST00000425413 LRRN4CLQ8ND94 238 aa13.07□□□□□ -0.32
UBR4-207ENST00000425413 LRRC15Q8TF66 581 aa13.07□□□□□ -0.32
UBR4-207ENST00000425413 DISC1Q9NRI5 854 aa13.07□□□□□ -0.32
UBR4-207ENST00000425413 TAB2Q9NYJ8 693 aa13.07□□□□□ -0.32
UBR4-207ENST00000425413 GAKO14976 1311 aa13.07□□□□□ -0.32
UBR4-207ENST00000425413 LONP1P36776 959 aaKnown RBP13.07□□□□□ -0.32
UBR4-207ENST00000425413 TMED8Q6PL24 325 aaPredicted RBP13.07□□□□□ -0.32
UBR4-207ENST00000425413 IGSF22Q8N9C0 903 aa13.07□□□□□ -0.32
UBR4-207ENST00000425413 TBCKQ8TEA7 893 aa13.07□□□□□ -0.32
UBR4-207ENST00000425413 NELFBQ8WX92 580 aa13.07□□□□□ -0.32
UBR4-207ENST00000425413 LAMB1P07942 1786 aa13.07□□□□□ -0.32
UBR4-207ENST00000425413 GTPBP6O43824 516 aaPredicted RBP13.06□□□□□ -0.32
UBR4-207ENST00000425413 PDHBP11177 359 aa13.06□□□□□ -0.32
UBR4-207ENST00000425413 NR1I3Q14994 352 aa13.06□□□□□ -0.32
UBR4-207ENST00000425413 NONOQ15233 471 aaKnown RBP eCLIP13.06□□□□□ -0.32
UBR4-207ENST00000425413 CCDC96Q2M329 555 aa13.06□□□□□ -0.32
UBR4-207ENST00000425413 NAALADL2Q58DX5 795 aa13.06□□□□□ -0.32
UBR4-207ENST00000425413 COA1Q9GZY4 146 aa13.06□□□□□ -0.32
UBR4-207ENST00000425413 C6orf50Q9HD87 102 aa13.06□□□□□ -0.32
UBR4-207ENST00000425413 MTMR4Q9NYA4 1195 aa13.06□□□□□ -0.32
UBR4-207ENST00000425413 TXKP42681 527 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms