RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 UBXN1Q04323 297 aa12.38□□□□□ -0.43
LIMS1-207ENST00000422797 ITIH3Q06033 890 aa12.38□□□□□ -0.43
LIMS1-207ENST00000422797 PTGDRQ13258 359 aa12.38□□□□□ -0.43
LIMS1-207ENST00000422797 MEA1Q16626 185 aa12.38□□□□□ -0.43
LIMS1-207ENST00000422797 PTPN21Q16825 1174 aa12.38□□□□□ -0.43
LIMS1-207ENST00000422797 DZIP3Q86Y13 1208 aaKnown RBP12.38□□□□□ -0.43
LIMS1-207ENST00000422797 FNBP4Q8N3X1 1017 aaPredicted RBP12.38□□□□□ -0.43
LIMS1-207ENST00000422797 ACRBPQ8NEB7 543 aa12.38□□□□□ -0.43
LIMS1-207ENST00000422797 BBXQ8WY36 941 aaPredicted RBP12.38□□□□□ -0.43
LIMS1-207ENST00000422797 CCDC102AQ96A19 550 aa12.38□□□□□ -0.43
LIMS1-207ENST00000422797 ZKSCAN3Q9BRR0 538 aa12.38□□□□□ -0.43
LIMS1-207ENST00000422797 IRX2Q9BZI1 471 aaPredicted RBP12.38□□□□□ -0.43
LIMS1-207ENST00000422797 ZCCHC17Q9NP64 241 aaKnown RBP12.38□□□□□ -0.43
LIMS1-207ENST00000422797 SAR1BQ9Y6B6 198 aa12.38□□□□□ -0.43
LIMS1-207ENST00000422797 ZNF804BA4D1E1 1349 aa12.38□□□□□ -0.43
LIMS1-207ENST00000422797 CNTNAP5Q8WYK1 1306 aa12.38□□□□□ -0.43
LIMS1-207ENST00000422797 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.38□□□□□ -0.43
LIMS1-207ENST00000422797 NUP98P52948 1817 aa12.38□□□□□ -0.43
LIMS1-207ENST00000422797 BICDL2A1A5D9 508 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 MYO1CO00159 1063 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 PRKAB2O43741 272 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 SCG2P13521 617 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 HSPA1LP34931 641 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 CCT6AP40227 531 aaKnown RBP12.37□□□□□ -0.43
LIMS1-207ENST00000422797 EVA1CP58658 441 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 TROAPQ12815 778 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 FIGNQ5HY92 759 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 ADSSL1Q8N142 457 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 MB21D1Q8N884 522 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 DDX17Q92841 729 aaKnown RBP12.37□□□□□ -0.43
LIMS1-207ENST00000422797 DHTKD1Q96HY7 919 aaPredicted RBP12.37□□□□□ -0.43
LIMS1-207ENST00000422797 ZSWIM4Q9H7M6 989 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 INCENPQ9NQS7 918 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 TAOK2Q9UL54 1235 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 ASAP1Q9ULH1 1129 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 RRP15Q9Y3B9 282 aaKnown RBP12.37□□□□□ -0.43
LIMS1-207ENST00000422797 V9GY48 417 aaPredicted RBP12.37□□□□□ -0.43
LIMS1-207ENST00000422797 A0A1W2PQJ5 194 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 PARP1P09874 1014 aaKnown RBP12.37□□□□□ -0.43
LIMS1-207ENST00000422797 RHOXF2BP0C7M4 288 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 STAT6P42226 847 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 GNAQP50148 359 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 NLRP5P59047 1200 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 ZNF174Q15697 407 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 PFKFB3Q16875 520 aaPredicted RBP12.37□□□□□ -0.43
LIMS1-207ENST00000422797 CCDC82Q8N4S0 544 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 AFAP1L1Q8TED9 768 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 SLF1Q9BQI6 1058 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 RHOXF2Q9BQY4 288 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 VPS16Q9H269 839 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 TAB2Q9NYJ8 693 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 FAN1Q9Y2M0 1017 aa12.37□□□□□ -0.43
LIMS1-207ENST00000422797 MYH2Q9UKX2 1941 aa12.36□□□□□ -0.43
LIMS1-207ENST00000422797 STRCP1A6NGW2 1772 aa12.36□□□□□ -0.43
LIMS1-207ENST00000422797 CICQ96RK0 1608 aaPredicted RBP12.36□□□□□ -0.43
LIMS1-207ENST00000422797 MINDY4BA8MYZ0 360 aa12.36□□□□□ -0.43
LIMS1-207ENST00000422797 EIF3CLB5ME19 914 aaKnown RBP12.36□□□□□ -0.43
LIMS1-207ENST00000422797 PRPHP41219 470 aa12.36□□□□□ -0.43
LIMS1-207ENST00000422797 ZBED6P86452 979 aa12.36□□□□□ -0.43
LIMS1-207ENST00000422797 ORC2Q13416 577 aaPredicted RBP12.36□□□□□ -0.43
LIMS1-207ENST00000422797 UBE4AQ14139 1066 aa12.36□□□□□ -0.43
LIMS1-207ENST00000422797 NPY5RQ15761 445 aa12.36□□□□□ -0.43
LIMS1-207ENST00000422797 COBLL1Q53SF7 1204 aa12.36□□□□□ -0.43
LIMS1-207ENST00000422797 GBP6Q6ZN66 633 aa12.36□□□□□ -0.43
LIMS1-207ENST00000422797 BRINP3Q76B58 766 aa12.36□□□□□ -0.43
LIMS1-207ENST00000422797 KIAA1328Q86T90 577 aa12.36□□□□□ -0.43
LIMS1-207ENST00000422797 SYNE4Q8N205 404 aa12.36□□□□□ -0.43
LIMS1-207ENST00000422797 CCDC155Q8N6L0 562 aa12.36□□□□□ -0.43
LIMS1-207ENST00000422797 DAGLBQ8NCG7 672 aa12.36□□□□□ -0.43
LIMS1-207ENST00000422797 AK8Q96MA6 479 aa12.36□□□□□ -0.43
LIMS1-207ENST00000422797 EIF3CQ99613 913 aaKnown RBP12.36□□□□□ -0.43
LIMS1-207ENST00000422797 RIOK1Q9BRS2 568 aaKnown RBP12.36□□□□□ -0.43
LIMS1-207ENST00000422797 DISC1Q9NRI5 854 aa12.36□□□□□ -0.43
LIMS1-207ENST00000422797 ABCB11O95342 1321 aa12.35□□□□□ -0.43
LIMS1-207ENST00000422797 PPFIA4O75335 1185 aa12.35□□□□□ -0.43
LIMS1-207ENST00000422797 RHOBTB3O94955 611 aa12.35□□□□□ -0.43
LIMS1-207ENST00000422797 SRGNP10124 158 aa12.35□□□□□ -0.43
LIMS1-207ENST00000422797 PRLRP16471 622 aa12.35□□□□□ -0.43
LIMS1-207ENST00000422797 MAGEA9P43362 315 aa12.35□□□□□ -0.43
LIMS1-207ENST00000422797 CCDC122Q5T0U0 273 aa12.35□□□□□ -0.43
LIMS1-207ENST00000422797 ARHGAP27Q6ZUM4 889 aa12.35□□□□□ -0.43
LIMS1-207ENST00000422797 ZNF572Q7Z3I7 529 aaPredicted RBP12.35□□□□□ -0.43
LIMS1-207ENST00000422797 AMOTL1Q8IY63 956 aa12.35□□□□□ -0.43
LIMS1-207ENST00000422797 ZNF507Q8TCN5 953 aa12.35□□□□□ -0.43
LIMS1-207ENST00000422797 COG1Q8WTW3 980 aa12.35□□□□□ -0.43
LIMS1-207ENST00000422797 JAKMIP2Q96AA8 810 aa12.35□□□□□ -0.43
LIMS1-207ENST00000422797 CRACR2AQ9BSW2 395 aa12.35□□□□□ -0.43
LIMS1-207ENST00000422797 CCSER1Q9C0I3 900 aa12.35□□□□□ -0.43
LIMS1-207ENST00000422797 EXOC1Q9NV70 894 aa12.35□□□□□ -0.43
LIMS1-207ENST00000422797 ARPP21Q9UBL0 812 aaPredicted RBP12.35□□□□□ -0.43
LIMS1-207ENST00000422797 ZBTB1Q9Y2K1 713 aa12.35□□□□□ -0.43
LIMS1-207ENST00000422797 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.35□□□□□ -0.43
LIMS1-207ENST00000422797 ITGB4P16144 1822 aa12.35□□□□□ -0.43
LIMS1-207ENST00000422797 TTC26A0AVF1 554 aa12.34□□□□□ -0.43
LIMS1-207ENST00000422797 FAM205CA6NFA0 338 aa12.34□□□□□ -0.43
LIMS1-207ENST00000422797 RGL2O15211 777 aa12.34□□□□□ -0.43
LIMS1-207ENST00000422797 USO1O60763 962 aaKnown RBP12.34□□□□□ -0.43
LIMS1-207ENST00000422797 TOM1O60784 492 aa12.34□□□□□ -0.43
LIMS1-207ENST00000422797 PLEKHA8P1O95397 391 aa12.34□□□□□ -0.43
LIMS1-207ENST00000422797 TNNT3P45378 269 aaPredicted RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms