RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 CLGNO14967 610 aa11.97□□□□□ -0.49
USP54-204ENST00000422491 GTPBP6O43824 516 aaPredicted RBP11.97□□□□□ -0.49
USP54-204ENST00000422491 CYLC1P35663 651 aaPredicted RBP11.97□□□□□ -0.49
USP54-204ENST00000422491 PPARAQ07869 468 aa11.97□□□□□ -0.49
USP54-204ENST00000422491 SPATA4Q8NEY3 305 aa11.97□□□□□ -0.49
USP54-204ENST00000422491 ZKSCAN4Q969J2 545 aaPredicted RBP11.97□□□□□ -0.49
USP54-204ENST00000422491 PDS5AQ29RF7 1337 aaKnown RBP11.97□□□□□ -0.49
USP54-204ENST00000422491 MEGF6O75095 1541 aa11.97□□□□□ -0.49
USP54-204ENST00000422491 BMP15O95972 392 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 PDE6AP16499 860 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 TNFRSF8P28908 595 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 PRCPP42785 496 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 NAP1L1P55209 391 aaKnown RBP11.96□□□□□ -0.49
USP54-204ENST00000422491 TSR1Q2NL82 804 aaKnown RBP11.96□□□□□ -0.49
USP54-204ENST00000422491 ESCO1Q5FWF5 840 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 EMC10Q5UCC4 262 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 CCDC170Q8IYT3 715 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 IFNL2Q8IZJ0 200 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 SH2D3CQ8N5H7 860 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 ZNF512BQ96KM6 892 aaPredicted RBP11.96□□□□□ -0.49
USP54-204ENST00000422491 CNNM2Q9H8M5 875 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 NHEJ1Q9H9Q4 299 aaPredicted RBP11.96□□□□□ -0.49
USP54-204ENST00000422491 GDAQ9Y2T3 454 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 MACROD2A1Z1Q3 448 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 HSF2BPO75031 334 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 IDH1O75874 414 aaKnown RBP11.96□□□□□ -0.49
USP54-204ENST00000422491 LSP1P33241 339 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 SLC7A5Q01650 507 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 AKNAD1Q5T1N1 836 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 NAA35Q5VZE5 725 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 KDM7AQ6ZMT4 941 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 IFNL3Q8IZI9 196 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 BANK1Q8NDB2 785 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 ZIM3Q96PE6 472 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 ZKSCAN3Q9BRR0 538 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 PHF20Q9BVI0 1012 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 CD248Q9HCU0 757 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 AGPAT5Q9NUQ2 364 aa11.96□□□□□ -0.49
USP54-204ENST00000422491 FER1L4A9Z1Z3 1794 aa11.96□□□□□ -0.5
USP54-204ENST00000422491 MYH6P13533 1939 aa11.96□□□□□ -0.5
USP54-204ENST00000422491 TRIM49BA6NDI0 452 aa11.96□□□□□ -0.5
USP54-204ENST00000422491 RASSF10A6NK89 507 aa11.96□□□□□ -0.5
USP54-204ENST00000422491 CHUKO15111 745 aa11.96□□□□□ -0.5
USP54-204ENST00000422491 PRLRP16471 622 aa11.96□□□□□ -0.5
USP54-204ENST00000422491 RCAN1P53805 252 aa11.96□□□□□ -0.5
USP54-204ENST00000422491 WTAPQ15007 396 aa11.96□□□□□ -0.5
USP54-204ENST00000422491 HAUS3Q68CZ6 603 aa11.96□□□□□ -0.5
USP54-204ENST00000422491 ANKLE2Q86XL3 938 aa11.96□□□□□ -0.5
USP54-204ENST00000422491 FANCBQ8NB91 859 aa11.96□□□□□ -0.5
USP54-204ENST00000422491 DCAF5Q96JK2 942 aa11.96□□□□□ -0.5
USP54-204ENST00000422491 RUFY1Q96T51 708 aa11.96□□□□□ -0.5
USP54-204ENST00000422491 KRT23Q9C075 422 aa11.96□□□□□ -0.5
USP54-204ENST00000422491 EPN3Q9H201 632 aa11.96□□□□□ -0.5
USP54-204ENST00000422491 ZBTB3Q9H5J0 574 aa11.96□□□□□ -0.5
USP54-204ENST00000422491 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.96□□□□□ -0.5
USP54-204ENST00000422491 STIM2Q9P246 746 aa11.96□□□□□ -0.5
USP54-204ENST00000422491 MAPK8IP1Q9UQF2 711 aa11.96□□□□□ -0.5
USP54-204ENST00000422491 EEF1GP26641 437 aaKnown RBP11.95□□□□□ -0.5
USP54-204ENST00000422491 KRT2P35908 639 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 ATP1A2P50993 1020 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 VAV2P52735 878 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 MRPS25P82663 173 aaKnown RBP11.95□□□□□ -0.5
USP54-204ENST00000422491 ATP2C1P98194 919 aaPredicted RBP11.95□□□□□ -0.5
USP54-204ENST00000422491 NNTQ13423 1086 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 TCIRG1Q13488 830 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 PKN1Q16512 942 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 RNPC3Q96LT9 517 aaKnown RBP11.95□□□□□ -0.5
USP54-204ENST00000422491 RNF26Q9BY78 433 aaPredicted RBP11.95□□□□□ -0.5
USP54-204ENST00000422491 VCPKMTQ9H867 229 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 MCM8Q9UJA3 840 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 CAPN6Q9Y6Q1 641 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 PATL2C9JE40 543 aaKnown RBP11.95□□□□□ -0.5
USP54-204ENST00000422491 ZNF263O14978 683 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 RASSF9O75901 435 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 KRT14P02533 472 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 RPN1P04843 607 aaKnown RBP11.95□□□□□ -0.5
USP54-204ENST00000422491 SRGNP10124 158 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 TATP17735 454 aaPredicted RBP11.95□□□□□ -0.5
USP54-204ENST00000422491 SMTNP53814 917 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 PMS1P54277 932 aaKnown RBP11.95□□□□□ -0.5
USP54-204ENST00000422491 CYP27A1Q02318 531 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 KIF5AQ12840 1032 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 ZNF174Q15697 407 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 PREPLQ4J6C6 727 aaPredicted RBP11.95□□□□□ -0.5
USP54-204ENST00000422491 KCTD16Q68DU8 428 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 MICALCLQ6ZW33 695 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 ADSSL1Q8N142 457 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 TRIM58Q8NG06 486 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 NAPBQ9H115 298 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 RMND1Q9NWS8 449 aa11.95□□□□□ -0.5
USP54-204ENST00000422491 SOS2Q07890 1332 aaPredicted RBP11.94□□□□□ -0.5
USP54-204ENST00000422491 CYP27B1O15528 508 aa11.94□□□□□ -0.5
USP54-204ENST00000422491 IPO7O95373 1038 aaKnown RBP11.94□□□□□ -0.5
USP54-204ENST00000422491 ACTN3Q08043 901 aaPredicted RBP11.94□□□□□ -0.5
USP54-204ENST00000422491 NEDD9Q14511 834 aa11.94□□□□□ -0.5
USP54-204ENST00000422491 PLCB4Q15147 1175 aa11.94□□□□□ -0.5
USP54-204ENST00000422491 MFSD6Q6ZSS7 791 aa11.94□□□□□ -0.5
USP54-204ENST00000422491 ZNF654Q8IZM8 581 aa11.94□□□□□ -0.5
USP54-204ENST00000422491 IQCKQ8N0W5 287 aa11.94□□□□□ -0.5
USP54-204ENST00000422491 SMCR8Q8TEV9 937 aaPredicted RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms