RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 RPN1P04843 607 aaKnown RBP11.16□□□□□ -0.62
SS18-203ENST00000415083 UBE4AQ14139 1066 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 KCNJ12Q14500 433 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 PPP2R5BQ15173 497 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 TBC1D9BQ66K14 1250 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 NCAPH2Q6IBW4 605 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 DYNLL2Q96FJ2 89 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 DUSP9Q99956 384 aaKnown RBP11.16□□□□□ -0.62
SS18-203ENST00000415083 NAA15Q9BXJ9 866 aaKnown RBP11.16□□□□□ -0.62
SS18-203ENST00000415083 ABCB6Q9NP58 842 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 RBM28Q9NW13 759 aaKnown RBP11.16□□□□□ -0.62
SS18-203ENST00000415083 MAD2L2Q9UI95 211 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 L1RE1Q9UN81 338 aa11.16□□□□□ -0.62
SS18-203ENST00000415083 SPATA31A1Q5TZJ5 1347 aa11.15□□□□□ -0.62
SS18-203ENST00000415083 VGLL3A8MV65 326 aa11.15□□□□□ -0.62
SS18-203ENST00000415083 TULP2O00295 520 aa11.15□□□□□ -0.62
SS18-203ENST00000415083 GTPBP6O43824 516 aaPredicted RBP11.15□□□□□ -0.62
SS18-203ENST00000415083 ZNF658Q5TYW1 1059 aaPredicted RBP11.15□□□□□ -0.62
SS18-203ENST00000415083 ADSSL1Q8N142 457 aa11.15□□□□□ -0.62
SS18-203ENST00000415083 BBXQ8WY36 941 aaPredicted RBP11.15□□□□□ -0.62
SS18-203ENST00000415083 EEF2KMTQ96G04 330 aa11.15□□□□□ -0.62
SS18-203ENST00000415083 SLF1Q9BQI6 1058 aa11.15□□□□□ -0.62
SS18-203ENST00000415083 TM4SF1P30408 202 aa11.15□□□□□ -0.62
SS18-203ENST00000415083 CPVLQ9H3G5 476 aa11.15□□□□□ -0.62
SS18-203ENST00000415083 ADAMTS2O95450 1211 aa11.15□□□□□ -0.63
SS18-203ENST00000415083 PLIN2Q99541 437 aa11.15□□□□□ -0.63
SS18-203ENST00000415083 PCDHA6Q9UN73 950 aa11.15□□□□□ -0.63
SS18-203ENST00000415083 PCDHA8Q9Y5H6 950 aa11.15□□□□□ -0.63
SS18-203ENST00000415083 CCDC151A5D8V7 595 aa11.14□□□□□ -0.63
SS18-203ENST00000415083 PAK1Q13153 545 aa11.14□□□□□ -0.63
SS18-203ENST00000415083 HNRNPLLQ8WVV9 542 aaKnown RBP11.14□□□□□ -0.63
SS18-203ENST00000415083 USP17L3A6NCW0 530 aa11.14□□□□□ -0.63
SS18-203ENST00000415083 USP17L4A6NCW7 530 aa11.14□□□□□ -0.63
SS18-203ENST00000415083 LRRIQ3A6PVS8 624 aaPredicted RBP11.14□□□□□ -0.63
SS18-203ENST00000415083 PARP1P09874 1014 aaKnown RBP11.14□□□□□ -0.63
SS18-203ENST00000415083 IRX5P78411 483 aaPredicted RBP11.14□□□□□ -0.63
SS18-203ENST00000415083 USP17L1Q7RTZ2 530 aa11.14□□□□□ -0.63
SS18-203ENST00000415083 PPFIBP1Q86W92 1011 aa11.14□□□□□ -0.63
SS18-203ENST00000415083 SLC44A5Q8NCS7 719 aa11.14□□□□□ -0.63
SS18-203ENST00000415083 AGPAT5Q9NUQ2 364 aa11.14□□□□□ -0.63
SS18-203ENST00000415083 ZNF263O14978 683 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 SRGAP2O75044 1071 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 TTI2Q6NXR4 508 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 ANKRD18AQ8IVF6 992 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 IQUBQ8NA54 791 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 DNAJC7Q99615 494 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 PDE11AQ9HCR9 933 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 ARFGAP3Q9NP61 516 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 ARGLU1Q9NWB6 273 aaPredicted RBP11.13□□□□□ -0.63
SS18-203ENST00000415083 DUSP10Q9Y6W6 482 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 ENC1O14682 589 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 N4BP3O15049 544 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 TPM1P09493 284 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 RHOXF2BP0C7M4 288 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 SBK1Q52WX2 424 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 HPS3Q969F9 1004 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 RHOXF2Q9BQY4 288 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 LACRTQ9GZZ8 138 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 DISC1Q9NRI5 854 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 LCMT1Q9UIC8 334 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 ATP1A1P05023 1023 aaKnown RBP11.13□□□□□ -0.63
SS18-203ENST00000415083 NLRP5P59047 1200 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 FAM193AP78312 1265 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 AKAP17AQ02040 695 aaKnown RBP11.13□□□□□ -0.63
SS18-203ENST00000415083 MIIPQ5JXC2 388 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 TRAPPC11Q7Z392 1133 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 IQCA1Q86XH1 822 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 CNGA4Q8IV77 575 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 BLIDQ8IZY5 108 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 MB21D1Q8N884 522 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 CTAGE1Q96RT6 745 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 KBTBD4Q9NVX7 518 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 TMEM51Q9NW97 253 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 ADAM21Q9UKJ8 722 aa11.13□□□□□ -0.63
SS18-203ENST00000415083 AHDC1Q5TGY3 1603 aaPredicted RBP11.13□□□□□ -0.63
SS18-203ENST00000415083 SNED1Q8TER0 1413 aa11.12□□□□□ -0.63
SS18-203ENST00000415083 PDE2AO00408 941 aaPredicted RBP11.12□□□□□ -0.63
SS18-203ENST00000415083 KRT9P35527 623 aa11.12□□□□□ -0.63
SS18-203ENST00000415083 MMTAG2Q9BU76 263 aaKnown RBP11.12□□□□□ -0.63
SS18-203ENST00000415083 PDS5AQ29RF7 1337 aaKnown RBP11.12□□□□□ -0.63
SS18-203ENST00000415083 STXBP3O00186 592 aa11.12□□□□□ -0.63
SS18-203ENST00000415083 NDUFA10O95299 355 aa11.12□□□□□ -0.63
SS18-203ENST00000415083 CALM1P0DP23 149 aa11.12□□□□□ -0.63
SS18-203ENST00000415083 CALM2P0DP24 149 aa11.12□□□□□ -0.63
SS18-203ENST00000415083 CALM3P0DP25 149 aa11.12□□□□□ -0.63
SS18-203ENST00000415083 SLC10A5Q5PT55 438 aa11.12□□□□□ -0.63
SS18-203ENST00000415083 FOXR1Q6PIV2 292 aa11.12□□□□□ -0.63
SS18-203ENST00000415083 CCDC51Q96ER9 411 aa11.12□□□□□ -0.63
SS18-203ENST00000415083 MMS19Q96T76 1030 aa11.12□□□□□ -0.63
SS18-203ENST00000415083 SRP68Q9UHB9 627 aaKnown RBP11.12□□□□□ -0.63
SS18-203ENST00000415083 MYBL2P10244 700 aa11.12□□□□□ -0.63
SS18-203ENST00000415083 TRAPPC10P48553 1259 aa11.12□□□□□ -0.63
SS18-203ENST00000415083 BRD3Q15059 726 aa11.12□□□□□ -0.63
SS18-203ENST00000415083 BICDL1Q6ZP65 573 aa11.12□□□□□ -0.63
SS18-203ENST00000415083 TMTC1Q8IUR5 882 aa11.12□□□□□ -0.63
SS18-203ENST00000415083 SH3RF3Q8TEJ3 882 aaPredicted RBP11.12□□□□□ -0.63
SS18-203ENST00000415083 PCDHA4Q9UN74 947 aa11.12□□□□□ -0.63
SS18-203ENST00000415083 LGALS16A8MUM7 142 aa11.11□□□□□ -0.63
SS18-203ENST00000415083 EPHB6O15197 1021 aa11.11□□□□□ -0.63
SS18-203ENST00000415083 KIF5CO60282 957 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms