RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 KRT13P13646 458 aa10.21□□□□□ -0.77
LIG4-202ENST00000405925 HOXA10P31260 410 aaPredicted RBP10.21□□□□□ -0.77
LIG4-202ENST00000405925 EXOSC10Q01780 885 aaKnown RBP10.21□□□□□ -0.77
LIG4-202ENST00000405925 SLC39A14Q15043 492 aa10.21□□□□□ -0.77
LIG4-202ENST00000405925 UBE2SQ16763 222 aa10.21□□□□□ -0.77
LIG4-202ENST00000405925 GNPTABQ3T906 1256 aa10.21□□□□□ -0.77
LIG4-202ENST00000405925 SBK1Q52WX2 424 aa10.21□□□□□ -0.77
LIG4-202ENST00000405925 FAM83BQ5T0W9 1011 aa10.21□□□□□ -0.77
LIG4-202ENST00000405925 MCTP2Q6DN12 878 aa10.21□□□□□ -0.77
LIG4-202ENST00000405925 TXLNBQ8N3L3 684 aa10.21□□□□□ -0.77
LIG4-202ENST00000405925 SPAG5Q96R06 1193 aa10.21□□□□□ -0.77
LIG4-202ENST00000405925 BICDL2A1A5D9 508 aa10.21□□□□□ -0.78
LIG4-202ENST00000405925 SORBS3O60504 671 aa10.21□□□□□ -0.78
LIG4-202ENST00000405925 TGFB2P61812 414 aa10.21□□□□□ -0.78
LIG4-202ENST00000405925 VPS36Q86VN1 386 aa10.21□□□□□ -0.78
LIG4-202ENST00000405925 SLC10A4Q96EP9 437 aa10.21□□□□□ -0.78
LIG4-202ENST00000405925 PNMA2Q9UL42 364 aa10.21□□□□□ -0.78
LIG4-202ENST00000405925 GINS2Q9Y248 185 aa10.21□□□□□ -0.78
LIG4-202ENST00000405925 CCDC169A6NNP5 214 aa10.21□□□□□ -0.78
LIG4-202ENST00000405925 TRAF5O00463 557 aa10.21□□□□□ -0.78
LIG4-202ENST00000405925 CMA1P23946 247 aa10.21□□□□□ -0.78
LIG4-202ENST00000405925 CYP4A11Q02928 519 aa10.21□□□□□ -0.78
LIG4-202ENST00000405925 RESTQ13127 1097 aa10.21□□□□□ -0.78
LIG4-202ENST00000405925 PRAMEF18Q5VWM3 479 aa10.21□□□□□ -0.78
LIG4-202ENST00000405925 CCDC186Q7Z3E2 898 aa10.21□□□□□ -0.78
LIG4-202ENST00000405925 CTAGE1Q96RT6 745 aa10.21□□□□□ -0.78
LIG4-202ENST00000405925 TBC1D7Q9P0N9 293 aa10.21□□□□□ -0.78
LIG4-202ENST00000405925 IFNKQ9P0W0 207 aa10.21□□□□□ -0.78
LIG4-202ENST00000405925 ZNF70Q9UC06 446 aaPredicted RBP10.21□□□□□ -0.78
LIG4-202ENST00000405925 TRAPPC10P48553 1259 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 FAM160B2Q86V87 743 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 RBSNQ9H1K0 784 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 SERPINA10Q9UK55 444 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 SLIT2O94813 1529 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 BCL9LQ86UU0 1499 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 PNMA6FA0A0J9YX94 578 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 NDUFA8P51970 172 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 NFIAQ12857 509 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 PNOCQ13519 176 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 ANGEL2Q5VTE6 544 aaKnown RBP10.2□□□□□ -0.78
LIG4-202ENST00000405925 VGLL2Q8N8G2 317 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 CCDC150Q8NCX0 1101 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 GGA3Q9NZ52 723 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 COL14A1Q05707 1796 aaKnown RBP10.2□□□□□ -0.78
LIG4-202ENST00000405925 TOPAZ1Q8N9V7 1692 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 CDC25AP30304 524 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 TM4SF1P30408 202 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 HOXA13P31271 388 aaPredicted RBP10.2□□□□□ -0.78
LIG4-202ENST00000405925 PPP4CP60510 307 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 CNNM4Q6P4Q7 775 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 MIER3Q7Z3K6 550 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.2□□□□□ -0.78
LIG4-202ENST00000405925 AZI2Q9H6S1 392 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 POLR3EQ9NVU0 708 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 CTNND2Q9UQB3 1225 aa10.2□□□□□ -0.78
LIG4-202ENST00000405925 USP17L10C9JJH3 530 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 DKC1O60832 514 aaKnown RBP eCLIP10.19□□□□□ -0.78
LIG4-202ENST00000405925 ENTPD3O75355 529 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 HARSP12081 509 aaKnown RBP10.19□□□□□ -0.78
LIG4-202ENST00000405925 KCTD2Q14681 263 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 STAG2Q8N3U4 1231 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 LINC00301Q8NCQ3 95 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 SYMPKQ92797 1274 aaKnown RBP10.19□□□□□ -0.78
LIG4-202ENST00000405925 GLG1Q92896 1179 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 PRMT6Q96LA8 375 aaPredicted RBP10.19□□□□□ -0.78
LIG4-202ENST00000405925 ZNF830Q96NB3 372 aaPredicted RBP10.19□□□□□ -0.78
LIG4-202ENST00000405925 RIOK1Q9BRS2 568 aaKnown RBP10.19□□□□□ -0.78
LIG4-202ENST00000405925 GTPBP4Q9BZE4 634 aaKnown RBP10.19□□□□□ -0.78
LIG4-202ENST00000405925 NT5C3AQ9H0P0 336 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 SETD1AO15047 1707 aaKnown RBP10.19□□□□□ -0.78
LIG4-202ENST00000405925 ANTXR2P58335 489 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 KARSQ15046 597 aaKnown RBP10.19□□□□□ -0.78
LIG4-202ENST00000405925 BRDTQ58F21 947 aaPredicted RBP10.19□□□□□ -0.78
LIG4-202ENST00000405925 GPT2Q8TD30 523 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 DCAF4Q8WV16 495 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 TMEM39BQ9GZU3 492 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 CSRNP2Q9H175 543 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 PCDHB6Q9Y5E3 794 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 IQCA1LA6NCM1 817 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 hCG_1984214I3L0E3 225 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 RASA1P20936 1047 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 CXCL9Q07325 125 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 CEP135Q66GS9 1140 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 USP37Q86T82 979 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 ZNF713Q8N859 430 aaPredicted RBP10.19□□□□□ -0.78
LIG4-202ENST00000405925 MLKLQ8NB16 471 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 CCDC112Q8NEF3 446 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 IGDCC4Q8TDY8 1250 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 FAM212AQ96EL1 285 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 MYOZ2Q9NPC6 264 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 MTMR4Q9NYA4 1195 aa10.19□□□□□ -0.78
LIG4-202ENST00000405925 AKR1B10O60218 316 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 PHACTR2O75167 634 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 POTEJP0CG39 1038 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 ERCC3P19447 782 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 RASSF7Q02833 373 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 GRM4Q14833 912 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 ADGRA1Q86SQ6 560 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 TRMT44Q8IYL2 757 aaKnown RBP10.18□□□□□ -0.78
LIG4-202ENST00000405925 FAM151AQ8WW52 585 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms