RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 KCNQ5Q9NR82 932 aa17.02■□□□□ 0.32
CBX3-202ENST00000396386 SPTLC3Q9NUV7 552 aa17.02■□□□□ 0.32
CBX3-202ENST00000396386 MYO1BO43795 1136 aa17.01■□□□□ 0.31
CBX3-202ENST00000396386 SARSP49591 514 aaKnown RBP17.01■□□□□ 0.31
CBX3-202ENST00000396386 NFIAQ12857 509 aa17.01■□□□□ 0.31
CBX3-202ENST00000396386 AOC3Q16853 763 aa17.01■□□□□ 0.31
CBX3-202ENST00000396386 CCDC144BQ3MJ40 725 aa17.01■□□□□ 0.31
CBX3-202ENST00000396386 SNHG28P0DPA3 235 aa17.01■□□□□ 0.31
CBX3-202ENST00000396386 LONP1P36776 959 aaKnown RBP17.01■□□□□ 0.31
CBX3-202ENST00000396386 MORC3Q14149 939 aa17.01■□□□□ 0.31
CBX3-202ENST00000396386 SOGA3Q5TF21 947 aa17.01■□□□□ 0.31
CBX3-202ENST00000396386 KRT25Q7Z3Z0 450 aa17.01■□□□□ 0.31
CBX3-202ENST00000396386 MLKLQ8NB16 471 aa17.01■□□□□ 0.31
CBX3-202ENST00000396386 C7orf43Q8WVR3 580 aa17.01■□□□□ 0.31
CBX3-202ENST00000396386 RIOX1Q9H6W3 641 aa17.01■□□□□ 0.31
CBX3-202ENST00000396386 C6orf50Q9HD87 102 aa17.01■□□□□ 0.31
CBX3-202ENST00000396386 FRMPD2Q68DX3 1309 aaPredicted RBP17.01■□□□□ 0.31
CBX3-202ENST00000396386 ESYT2A0FGR8 921 aa17■□□□□ 0.31
CBX3-202ENST00000396386 NEMFO60524 1076 aa17■□□□□ 0.31
CBX3-202ENST00000396386 BMP6P22004 513 aa17■□□□□ 0.31
CBX3-202ENST00000396386 LMOD1P29536 600 aaPredicted RBP17■□□□□ 0.31
CBX3-202ENST00000396386 GNA11P29992 359 aa17■□□□□ 0.31
CBX3-202ENST00000396386 RBM5P52756 815 aaKnown RBP eCLIP17■□□□□ 0.31
CBX3-202ENST00000396386 EIF6P56537 245 aaKnown RBP17■□□□□ 0.31
CBX3-202ENST00000396386 SH3RF1Q7Z6J0 888 aa17■□□□□ 0.31
CBX3-202ENST00000396386 CLEC10AQ8IUN9 316 aa17■□□□□ 0.31
CBX3-202ENST00000396386 C17orf53Q8N3J3 647 aaPredicted RBP17■□□□□ 0.31
CBX3-202ENST00000396386 SPATA20Q8TB22 786 aa17■□□□□ 0.31
CBX3-202ENST00000396386 CCDC17Q96LX7 622 aa17■□□□□ 0.31
CBX3-202ENST00000396386 PIGSQ96S52 555 aa17■□□□□ 0.31
CBX3-202ENST00000396386 XPO4Q9C0E2 1151 aaKnown RBP17■□□□□ 0.31
CBX3-202ENST00000396386 DHX36Q9H2U1 1008 aaKnown RBP17■□□□□ 0.31
CBX3-202ENST00000396386 IFNKQ9P0W0 207 aa17■□□□□ 0.31
CBX3-202ENST00000396386 SERPINA10Q9UK55 444 aa17■□□□□ 0.31
CBX3-202ENST00000396386 TXLNAP40222 546 aa16.99■□□□□ 0.31
CBX3-202ENST00000396386 INF2Q27J81 1249 aa16.99■□□□□ 0.31
CBX3-202ENST00000396386 C4orf32Q8N8J7 132 aa16.99■□□□□ 0.31
CBX3-202ENST00000396386 PAGE5Q96GU1 130 aa16.99■□□□□ 0.31
CBX3-202ENST00000396386 IDI2Q9BXS1 227 aa16.99■□□□□ 0.31
CBX3-202ENST00000396386 SMCO2A6NFE2 343 aa16.99■□□□□ 0.31
CBX3-202ENST00000396386 LAD1O00515 517 aa16.99■□□□□ 0.31
CBX3-202ENST00000396386 MPHOSPH10O00566 681 aaKnown RBP16.99■□□□□ 0.31
CBX3-202ENST00000396386 NPM3O75607 178 aaKnown RBP16.99■□□□□ 0.31
CBX3-202ENST00000396386 FANCCQ00597 558 aa16.99■□□□□ 0.31
CBX3-202ENST00000396386 LRMPQ12912 555 aa16.99■□□□□ 0.31
CBX3-202ENST00000396386 SF3B2Q13435 895 aaKnown RBP16.99■□□□□ 0.31
CBX3-202ENST00000396386 IL17AQ16552 155 aa16.99■□□□□ 0.31
CBX3-202ENST00000396386 IQUBQ8NA54 791 aa16.99■□□□□ 0.31
CBX3-202ENST00000396386 HSD3B7Q9H2F3 369 aa16.99■□□□□ 0.31
CBX3-202ENST00000396386 IMPACTQ9P2X3 320 aa16.99■□□□□ 0.31
CBX3-202ENST00000396386 COL2A1P02458 1487 aaPredicted RBP16.98■□□□□ 0.31
CBX3-202ENST00000396386 CBFA2T2O43439 604 aa16.98■□□□□ 0.31
CBX3-202ENST00000396386 AFMP43652 599 aa16.98■□□□□ 0.31
CBX3-202ENST00000396386 GSDMDP57764 484 aa16.98■□□□□ 0.31
CBX3-202ENST00000396386 ZNF543Q08ER8 600 aa16.98■□□□□ 0.31
CBX3-202ENST00000396386 NONOQ15233 471 aaKnown RBP eCLIP16.98■□□□□ 0.31
CBX3-202ENST00000396386 E2F4Q16254 413 aa16.98■□□□□ 0.31
CBX3-202ENST00000396386 CACTINQ8WUQ7 758 aaKnown RBP16.98■□□□□ 0.31
CBX3-202ENST00000396386 UBA5Q9GZZ9 404 aa16.98■□□□□ 0.31
CBX3-202ENST00000396386 VAT1LQ9HCJ6 419 aa16.98■□□□□ 0.31
CBX3-202ENST00000396386 KIF13BQ9NQT8 1826 aa16.98■□□□□ 0.31
CBX3-202ENST00000396386 PPIP5K2O43314 1243 aa16.97■□□□□ 0.31
CBX3-202ENST00000396386 CACNB3P54284 484 aa16.97■□□□□ 0.31
CBX3-202ENST00000396386 DNTTIP2Q5QJE6 756 aaKnown RBP16.97■□□□□ 0.31
CBX3-202ENST00000396386 ZFPM1Q8IX07 1006 aa16.97■□□□□ 0.31
CBX3-202ENST00000396386 TRIM34Q9BYJ4 488 aa16.97■□□□□ 0.31
CBX3-202ENST00000396386 DNAJC18Q9H819 358 aa16.97■□□□□ 0.31
CBX3-202ENST00000396386 FAM198AQ9UFP1 575 aa16.97■□□□□ 0.31
CBX3-202ENST00000396386 R3HCC1Q9Y3T6 440 aaKnown RBP16.97■□□□□ 0.31
CBX3-202ENST00000396386 PCDHAC2Q9Y5I4 1007 aa16.97■□□□□ 0.31
CBX3-202ENST00000396386 PRPHP41219 470 aa16.97■□□□□ 0.31
CBX3-202ENST00000396386 TERF1P54274 439 aa16.97■□□□□ 0.31
CBX3-202ENST00000396386 TCP10Q12799 353 aa16.97■□□□□ 0.31
CBX3-202ENST00000396386 DPYDQ12882 1025 aa16.97■□□□□ 0.31
CBX3-202ENST00000396386 GRIPAP1Q4V328 841 aa16.97■□□□□ 0.31
CBX3-202ENST00000396386 PPP1R18Q6NYC8 613 aa16.97■□□□□ 0.31
CBX3-202ENST00000396386 DTHD1Q6ZMT9 781 aa16.97■□□□□ 0.31
CBX3-202ENST00000396386 FILIP1Q7Z7B0 1213 aa16.97■□□□□ 0.31
CBX3-202ENST00000396386 LRRC8AQ8IWT6 810 aa16.97■□□□□ 0.31
CBX3-202ENST00000396386 REXO1Q8N1G1 1221 aaKnown RBP16.97■□□□□ 0.31
CBX3-202ENST00000396386 GPCPD1Q9NPB8 672 aa16.97■□□□□ 0.31
CBX3-202ENST00000396386 ATP1A3P13637 1013 aa16.96■□□□□ 0.31
CBX3-202ENST00000396386 ORC2Q13416 577 aaPredicted RBP16.96■□□□□ 0.31
CBX3-202ENST00000396386 DHX8Q14562 1220 aaKnown RBP16.96■□□□□ 0.31
CBX3-202ENST00000396386 CCDC96Q2M329 555 aa16.96■□□□□ 0.31
CBX3-202ENST00000396386 CT47A1Q5JQC4 288 aaPredicted RBP16.96■□□□□ 0.31
CBX3-202ENST00000396386 GPATCH4Q5T3I0 446 aaKnown RBP16.96■□□□□ 0.31
CBX3-202ENST00000396386 PDXDC2PQ6P474 469 aa16.96■□□□□ 0.31
CBX3-202ENST00000396386 ZSCAN29Q8IWY8 852 aaPredicted RBP16.96■□□□□ 0.31
CBX3-202ENST00000396386 GSDMAQ96QA5 445 aa16.96■□□□□ 0.31
CBX3-202ENST00000396386 PI4KBQ9UBF8 816 aa16.96■□□□□ 0.31
CBX3-202ENST00000396386 DDTLA6NHG4 134 aaPredicted RBP16.95■□□□□ 0.3
CBX3-202ENST00000396386 SERPINC1P01008 464 aa16.95■□□□□ 0.3
CBX3-202ENST00000396386 ADCY7P51828 1080 aa16.95■□□□□ 0.3
CBX3-202ENST00000396386 ATP2B2Q01814 1243 aa16.95■□□□□ 0.3
CBX3-202ENST00000396386 CCDC93Q567U6 631 aa16.95■□□□□ 0.3
CBX3-202ENST00000396386 TMC6Q7Z403 805 aa16.95■□□□□ 0.3
CBX3-202ENST00000396386 NEK8Q86SG6 692 aa16.95■□□□□ 0.3
CBX3-202ENST00000396386 CCDC150Q8NCX0 1101 aa16.95■□□□□ 0.3
CBX3-202ENST00000396386 ENOX1Q8TC92 643 aaKnown RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms