RNA–Protein interactions for RNA: ENST00000396354.5

NDE1-201, Transcript of nudE neurodevelopment protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDE1, Length 3,221 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-201ENST00000396354 HDAC6Q9UBN7 1215 aa10.51□□□□□ -0.73
NDE1-201ENST00000396354 CDK5RAP2Q96SN8 1893 aa10.51□□□□□ -0.73
NDE1-201ENST00000396354 STK36Q9NRP7 1315 aa10.51□□□□□ -0.73
NDE1-201ENST00000396354 CCDC88AQ3V6T2 1871 aa10.51□□□□□ -0.73
NDE1-201ENST00000396354 TADA3O75528 432 aa10.51□□□□□ -0.73
NDE1-201ENST00000396354 CUL4BQ13620 913 aa10.51□□□□□ -0.73
NDE1-201ENST00000396354 NPY5RQ15761 445 aa10.51□□□□□ -0.73
NDE1-201ENST00000396354 PRR5LQ6MZQ0 368 aa10.51□□□□□ -0.73
NDE1-201ENST00000396354 TRIM34Q9BYJ4 488 aa10.51□□□□□ -0.73
NDE1-201ENST00000396354 ARFGAP3Q9NP61 516 aa10.51□□□□□ -0.73
NDE1-201ENST00000396354 RYDENQ9NUL5 291 aaKnown RBP10.51□□□□□ -0.73
NDE1-201ENST00000396354 VPS18Q9P253 973 aa10.51□□□□□ -0.73
NDE1-201ENST00000396354 STX8Q9UNK0 236 aa10.51□□□□□ -0.73
NDE1-201ENST00000396354 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.5□□□□□ -0.73
NDE1-201ENST00000396354 RNF225M0QZC1 329 aaPredicted RBP10.5□□□□□ -0.73
NDE1-201ENST00000396354 DEXIO95424 95 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 CCDC175P0C221 793 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 TROAPQ12815 778 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 SMC1AQ14683 1233 aaKnown RBP10.5□□□□□ -0.73
NDE1-201ENST00000396354 RILPL1Q5EBL4 403 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 TPTE2Q6XPS3 522 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 CATIPQ7Z7H3 387 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 GSPT2Q8IYD1 628 aaKnown RBP10.5□□□□□ -0.73
NDE1-201ENST00000396354 SLC35F6Q8N357 371 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 HPS3Q969F9 1004 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 DYNLL2Q96FJ2 89 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 ZSCAN10Q96SZ4 725 aaPredicted RBP10.5□□□□□ -0.73
NDE1-201ENST00000396354 POLD4Q9HCU8 107 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 TSPY2A6NKD2 308 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 KIF5CO60282 957 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 FGRP09769 529 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 PTPREP23469 700 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 HNRNPH2P55795 449 aaKnown RBP10.5□□□□□ -0.73
NDE1-201ENST00000396354 SLC35G1Q2M3R5 365 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 SLC44A5Q8NCS7 719 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 BRIP1Q9BX63 1249 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 NYXQ9GZU5 481 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 L2HGDHQ9H9P8 463 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 CREBZFQ9NS37 354 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 GNL3LQ9NVN8 582 aaKnown RBP10.5□□□□□ -0.73
NDE1-201ENST00000396354 H2AFXP16104 143 aaPredicted RBP10.5□□□□□ -0.73
NDE1-201ENST00000396354 CHMP4BP1P59074 171 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 UBXN1Q04323 297 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 RCSD1Q6JBY9 416 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 ESR2Q92731 530 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 PAGE5Q96GU1 130 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 PDE11AQ9HCR9 933 aa10.5□□□□□ -0.73
NDE1-201ENST00000396354 MKRN1Q9UHC7 482 aaKnown RBP10.5□□□□□ -0.73
NDE1-201ENST00000396354 SAP30BPQ9UHR5 308 aaKnown RBP10.5□□□□□ -0.73
NDE1-201ENST00000396354 GYS1P13807 737 aa10.49□□□□□ -0.73
NDE1-201ENST00000396354 XBP1P17861 261 aa10.49□□□□□ -0.73
NDE1-201ENST00000396354 RFC4P35249 363 aa10.49□□□□□ -0.73
NDE1-201ENST00000396354 KRT2P35908 639 aa10.49□□□□□ -0.73
NDE1-201ENST00000396354 GPSM2P81274 684 aa10.49□□□□□ -0.73
NDE1-201ENST00000396354 EN1Q05925 392 aaPredicted RBP10.49□□□□□ -0.73
NDE1-201ENST00000396354 GABPB1Q06547 395 aaPredicted RBP10.49□□□□□ -0.73
NDE1-201ENST00000396354 DDR1Q08345 913 aa10.49□□□□□ -0.73
NDE1-201ENST00000396354 FILIP1LQ4L180 1135 aa10.49□□□□□ -0.73
NDE1-201ENST00000396354 SH3RF3Q8TEJ3 882 aaPredicted RBP10.49□□□□□ -0.73
NDE1-201ENST00000396354 WASF1Q92558 559 aa10.49□□□□□ -0.73
NDE1-201ENST00000396354 CHP1Q99653 195 aa10.49□□□□□ -0.73
NDE1-201ENST00000396354 STK25O00506 426 aa10.49□□□□□ -0.73
NDE1-201ENST00000396354 ATP2B2Q01814 1243 aa10.49□□□□□ -0.73
NDE1-201ENST00000396354 PTPROQ16827 1216 aa10.49□□□□□ -0.73
NDE1-201ENST00000396354 DEFB132Q7Z7B7 95 aa10.49□□□□□ -0.73
NDE1-201ENST00000396354 IQCA1Q86XH1 822 aa10.49□□□□□ -0.73
NDE1-201ENST00000396354 TMEM139Q8IV31 216 aa10.49□□□□□ -0.73
NDE1-201ENST00000396354 SRBD1Q8N5C6 995 aaKnown RBP10.49□□□□□ -0.73
NDE1-201ENST00000396354 TNS1Q9HBL0 1735 aaKnown RBP10.49□□□□□ -0.73
NDE1-201ENST00000396354 MACROD2A1Z1Q3 448 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 ACTN4O43707 911 aaKnown RBP10.48□□□□□ -0.73
NDE1-201ENST00000396354 KRT9P35527 623 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 CCDC93Q567U6 631 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 TTC38Q5R3I4 469 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 TRAPPC3LQ5T215 181 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 HEATR3Q7Z4Q2 680 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 CTCFLQ8NI51 663 aaPredicted RBP10.48□□□□□ -0.73
NDE1-201ENST00000396354 BPIFA3Q9BQP9 254 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 MCM9Q9NXL9 1143 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 CCP110O43303 1012 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 TPM1P09493 284 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 CYP27A1Q02318 531 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 CC2D1AQ6P1N0 951 aaPredicted RBP10.48□□□□□ -0.73
NDE1-201ENST00000396354 CNBD1Q8NA66 436 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 MLKLQ8NB16 471 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 IL17RBQ9NRM6 502 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 ANKIB1Q9P2G1 1089 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 CNTNAP5Q8WYK1 1306 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 CCDC196A0A1B0GTZ2 297 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 PLCD1P51178 756 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 EIF6P56537 245 aaKnown RBP10.48□□□□□ -0.73
NDE1-201ENST00000396354 GRAPQ13588 217 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 EZH2Q15910 746 aaKnown RBP10.48□□□□□ -0.73
NDE1-201ENST00000396354 DNAJC21Q5F1R6 531 aaKnown RBP10.48□□□□□ -0.73
NDE1-201ENST00000396354 JAKMIP3Q5VZ66 844 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 GRAPLQ8TC17 118 aaPredicted RBP10.48□□□□□ -0.73
NDE1-201ENST00000396354 GOLGA1Q92805 767 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 PNKPQ96T60 521 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 DACH1Q9UI36 760 aa10.48□□□□□ -0.73
NDE1-201ENST00000396354 ADAMTSL1Q8N6G6 1762 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms