RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 UBA7P41226 1012 aa12.65□□□□□ -0.39
TCOF1-203ENST00000394269 SLC15A2Q16348 729 aa12.65□□□□□ -0.39
TCOF1-203ENST00000394269 IL17AQ16552 155 aa12.65□□□□□ -0.39
TCOF1-203ENST00000394269 PODNQ7Z5L7 613 aa12.65□□□□□ -0.39
TCOF1-203ENST00000394269 CERS3Q8IU89 383 aa12.65□□□□□ -0.39
TCOF1-203ENST00000394269 BARHL2Q9NY43 387 aa12.65□□□□□ -0.39
TCOF1-203ENST00000394269 CHD4Q14839 1912 aa12.64□□□□□ -0.39
TCOF1-203ENST00000394269 TAF1LQ8IZX4 1826 aa12.64□□□□□ -0.39
TCOF1-203ENST00000394269 CLRN2A0PK11 232 aa12.64□□□□□ -0.39
TCOF1-203ENST00000394269 STXBP3O00186 592 aa12.64□□□□□ -0.39
TCOF1-203ENST00000394269 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.64□□□□□ -0.39
TCOF1-203ENST00000394269 OSBPL5Q9H0X9 879 aaPredicted RBP12.64□□□□□ -0.39
TCOF1-203ENST00000394269 SAMSN1Q9NSI8 373 aaKnown RBP12.64□□□□□ -0.39
TCOF1-203ENST00000394269 DDTLA6NHG4 134 aaPredicted RBP12.64□□□□□ -0.39
TCOF1-203ENST00000394269 MARCH6O60337 910 aa12.64□□□□□ -0.39
TCOF1-203ENST00000394269 ATP2C1P98194 919 aaPredicted RBP12.64□□□□□ -0.39
TCOF1-203ENST00000394269 MDM2Q00987 491 aaPredicted RBP12.64□□□□□ -0.39
TCOF1-203ENST00000394269 TMED8Q6PL24 325 aaPredicted RBP12.64□□□□□ -0.39
TCOF1-203ENST00000394269 ZNF579Q8NAF0 562 aaKnown RBP12.64□□□□□ -0.39
TCOF1-203ENST00000394269 C6orf50Q9HD87 102 aa12.64□□□□□ -0.39
TCOF1-203ENST00000394269 TMEM232C9JQI7 657 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 SLFN14P0C7P3 912 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 PDHBP11177 359 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 TXLNAP40222 546 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 STAT6P42226 847 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 TNNI2P48788 182 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 SARM1Q6SZW1 724 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 IQUBQ8NA54 791 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 TCP11L1Q9NUJ3 509 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 SBF2Q86WG5 1849 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 TCP10L2B9ZVM9 353 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 PES1O00541 588 aaKnown RBP12.63□□□□□ -0.39
TCOF1-203ENST00000394269 BMP15O95972 392 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 KANK3Q6NY19 840 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 CPLX3Q8WVH0 158 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 ZBTB12Q9Y330 459 aaPredicted RBP12.63□□□□□ -0.39
TCOF1-203ENST00000394269 TTLL1O95922 423 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 SFPQP23246 707 aaKnown RBP eCLIP12.63□□□□□ -0.39
TCOF1-203ENST00000394269 TECP42680 631 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 TXKP42681 527 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 SPICE1Q8N0Z3 855 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 TBCKQ8TEA7 893 aa12.63□□□□□ -0.39
TCOF1-203ENST00000394269 CUL4BQ13620 913 aa12.62□□□□□ -0.39
TCOF1-203ENST00000394269 UBE2SQ16763 222 aa12.62□□□□□ -0.39
TCOF1-203ENST00000394269 RRAGBQ5VZM2 374 aa12.62□□□□□ -0.39
TCOF1-203ENST00000394269 RGS22Q8NE09 1264 aa12.62□□□□□ -0.39
TCOF1-203ENST00000394269 ANKS1AQ92625 1134 aa12.62□□□□□ -0.39
TCOF1-203ENST00000394269 GJA10Q969M2 543 aa12.62□□□□□ -0.39
TCOF1-203ENST00000394269 LY75O60449 1722 aa12.62□□□□□ -0.39
TCOF1-203ENST00000394269 TIAM2Q8IVF5 1701 aa12.62□□□□□ -0.39
TCOF1-203ENST00000394269 USP27XA6NNY8 438 aa12.62□□□□□ -0.39
TCOF1-203ENST00000394269 GNA11P29992 359 aa12.62□□□□□ -0.39
TCOF1-203ENST00000394269 CERKLQ49MI3 558 aaPredicted RBP12.62□□□□□ -0.39
TCOF1-203ENST00000394269 CNKSR1Q969H4 720 aa12.62□□□□□ -0.39
TCOF1-203ENST00000394269 NUP88Q99567 741 aaPredicted RBP12.62□□□□□ -0.39
TCOF1-203ENST00000394269 ZNF277Q9NRM2 450 aaPredicted RBP12.62□□□□□ -0.39
TCOF1-203ENST00000394269 USP17L10C9JJH3 530 aa12.62□□□□□ -0.39
TCOF1-203ENST00000394269 SHMT1P34896 483 aa12.62□□□□□ -0.39
TCOF1-203ENST00000394269 REXO1Q8N1G1 1221 aaKnown RBP12.62□□□□□ -0.39
TCOF1-203ENST00000394269 VEZTQ9HBM0 779 aa12.62□□□□□ -0.39
TCOF1-203ENST00000394269 COL24A1Q17RW2 1714 aa12.61□□□□□ -0.39
TCOF1-203ENST00000394269 FAM237AA0A1B0GTK4 181 aa12.61□□□□□ -0.39
TCOF1-203ENST00000394269 HMGB2P26583 209 aaKnown RBP12.61□□□□□ -0.39
TCOF1-203ENST00000394269 SLC1A4P43007 532 aa12.61□□□□□ -0.39
TCOF1-203ENST00000394269 SEPT2Q15019 361 aa12.61□□□□□ -0.39
TCOF1-203ENST00000394269 NONOQ15233 471 aaKnown RBP eCLIP12.61□□□□□ -0.39
TCOF1-203ENST00000394269 CCDC12Q8WUD4 166 aaPredicted RBP12.61□□□□□ -0.39
TCOF1-203ENST00000394269 PRMT6Q96LA8 375 aaPredicted RBP12.61□□□□□ -0.39
TCOF1-203ENST00000394269 ZNF831Q5JPB2 1677 aa12.61□□□□□ -0.39
TCOF1-203ENST00000394269 TNNT1P13805 278 aa12.61□□□□□ -0.39
TCOF1-203ENST00000394269 ADGRF4Q8IZF3 695 aa12.61□□□□□ -0.39
TCOF1-203ENST00000394269 LARGE2Q8N3Y3 721 aa12.61□□□□□ -0.39
TCOF1-203ENST00000394269 LZTS2Q9BRK4 669 aa12.61□□□□□ -0.39
TCOF1-203ENST00000394269 ZYXQ15942 572 aaKnown RBP12.6□□□□□ -0.39
TCOF1-203ENST00000394269 FAM177A1Q8N128 213 aaPredicted RBP12.6□□□□□ -0.39
TCOF1-203ENST00000394269 MLKLQ8NB16 471 aa12.6□□□□□ -0.39
TCOF1-203ENST00000394269 HSD3B7Q9H2F3 369 aa12.6□□□□□ -0.39
TCOF1-203ENST00000394269 IKBKBO14920 756 aa12.6□□□□□ -0.39
TCOF1-203ENST00000394269 EEF2P13639 858 aaKnown RBP12.6□□□□□ -0.39
TCOF1-203ENST00000394269 CD44P16070 742 aaKnown RBP12.6□□□□□ -0.39
TCOF1-203ENST00000394269 TAL1P17542 331 aaPredicted RBP12.6□□□□□ -0.39
TCOF1-203ENST00000394269 BAG6P46379 1132 aa12.6□□□□□ -0.39
TCOF1-203ENST00000394269 TRAPPC10P48553 1259 aa12.6□□□□□ -0.39
TCOF1-203ENST00000394269 DACT2Q5SW24 774 aa12.6□□□□□ -0.39
TCOF1-203ENST00000394269 RBM26Q5T8P6 1007 aaKnown RBP12.6□□□□□ -0.39
TCOF1-203ENST00000394269 STRIP1Q5VSL9 837 aa12.6□□□□□ -0.39
TCOF1-203ENST00000394269 HHIPL2Q6UWX4 724 aa12.6□□□□□ -0.39
TCOF1-203ENST00000394269 BPIFA3Q9BQP9 254 aa12.6□□□□□ -0.39
TCOF1-203ENST00000394269 DACH1Q9UI36 760 aa12.6□□□□□ -0.39
TCOF1-203ENST00000394269 CTNND2Q9UQB3 1225 aa12.6□□□□□ -0.39
TCOF1-203ENST00000394269 UBR3Q6ZT12 1888 aa12.6□□□□□ -0.39
TCOF1-203ENST00000394269 MORC3Q14149 939 aa12.6□□□□□ -0.39
TCOF1-203ENST00000394269 SPZ1Q9BXG8 430 aa12.6□□□□□ -0.39
TCOF1-203ENST00000394269 SH3GLB2Q9NR46 395 aa12.6□□□□□ -0.39
TCOF1-203ENST00000394269 ROBO3Q96MS0 1386 aa12.6□□□□□ -0.39
TCOF1-203ENST00000394269 NEMFO60524 1076 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 GABPAQ06546 454 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 USH1GQ495M9 461 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 SNED1Q8TER0 1413 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 BRWD3Q6RI45 1802 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms