RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 TEKT4Q8WW24 435 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 PHF21AQ96BD5 680 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 MMS19Q96T76 1030 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 LRPPRCP42704 1394 aaKnown RBP11.63□□□□□ -0.55
RTN3-206ENST00000377819 POGZQ7Z3K3 1410 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 RIMBP2O15034 1052 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 TCF3P15923 654 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 TMOD1P28289 359 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 SESN3P58005 492 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 SF3A3Q12874 501 aaKnown RBP eCLIP11.63□□□□□ -0.55
RTN3-206ENST00000377819 USP48Q86UV5 1035 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 NDUFAF2Q8N183 169 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 AFAP1Q8N556 730 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 CDC26Q8NHZ8 85 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 SHANK2Q9UPX8 1470 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 UNC13BO14795 1591 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 H0YCG3 227 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 CHEK2O96017 543 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 ATP6V1AP38606 617 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 GRIN1Q05586 938 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 ATG16L1Q676U5 607 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 TBC1D2Q9BYX2 928 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 GPCPD1Q9NPB8 672 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 NFKBIL1Q9UBC1 381 aaPredicted RBP11.63□□□□□ -0.55
RTN3-206ENST00000377819 LRWD1Q9UFC0 647 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 PACSIN2Q9UNF0 486 aaPredicted RBP11.63□□□□□ -0.55
RTN3-206ENST00000377819 MYO5CQ9NQX4 1742 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 WBP4O75554 376 aaKnown RBP11.63□□□□□ -0.55
RTN3-206ENST00000377819 GFAPP14136 432 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 EPHB1P54762 984 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 LMBR1LQ6UX01 489 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 CDC37L1Q7L3B6 337 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 RASEFQ8IZ41 740 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 NUDCD1Q96RS6 583 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 SAMD9LQ8IVG5 1584 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 ARHGEF37A1IGU5 675 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 EEF1GP26641 437 aaKnown RBP11.62□□□□□ -0.55
RTN3-206ENST00000377819 TXKP42681 527 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 LONRF2Q1L5Z9 754 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 TJAP1Q5JTD0 557 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 MYSM1Q5VVJ2 828 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 SMC5Q8IY18 1101 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 USHBP1Q8N6Y0 703 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 LRRC8CQ8TDW0 803 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 SPATA17Q96L03 361 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 UPF3AQ9H1J1 476 aaKnown RBP11.62□□□□□ -0.55
RTN3-206ENST00000377819 MAST3O60307 1309 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 SLC1A4P43007 532 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 NCAPH2Q6IBW4 605 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 RINT1Q6NUQ1 792 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 GOLGA5Q8TBA6 731 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 RBM46Q8TBY0 533 aaKnown RBP11.62□□□□□ -0.55
RTN3-206ENST00000377819 IQCDQ96DY2 449 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 MLXIPQ9HAP2 919 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 TTC37Q6PGP7 1564 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 A6NJR5 290 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 INHBAP08476 426 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 DAB2P98082 770 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 OCA2Q04671 838 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 SNX29Q8TEQ0 813 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 KIF9Q9HAQ2 790 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 ZRANB1Q9UGI0 708 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 TLK1Q9UKI8 766 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 RIPOR2Q9Y4F9 1068 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 ELP1O95163 1332 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 TOM1O60784 492 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 PEX19P40855 299 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 BFSP1Q12934 665 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 ZNF174Q15697 407 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 ZBTB33Q86T24 672 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 CERS3Q8IU89 383 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 METTL13Q8N6R0 699 aa11.62□□□□□ -0.55
RTN3-206ENST00000377819 WDR64B1ANS9 1081 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 STAM2O75886 525 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 KRT4P19013 534 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 CTNNA1P35221 906 aaKnown RBP11.61□□□□□ -0.55
RTN3-206ENST00000377819 ARHGAP44Q17R89 818 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 CWF19L2Q2TBE0 894 aaKnown RBP11.61□□□□□ -0.55
RTN3-206ENST00000377819 TRMT10CQ7L0Y3 403 aaKnown RBP11.61□□□□□ -0.55
RTN3-206ENST00000377819 EXOC8Q8IYI6 725 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 SCYL3Q8IZE3 742 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 CNPY2Q9Y2B0 182 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 ZNF263O14978 683 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 F13A1P00488 732 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 PABPC4Q13310 644 aaKnown RBP eCLIP11.61□□□□□ -0.553e-7■■□□□ 12.6
RTN3-206ENST00000377819 ANGPTL8Q6UXH0 198 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 DDX42Q86XP3 938 aaKnown RBP eCLIP11.61□□□□□ -0.55
RTN3-206ENST00000377819 MID2Q9UJV3 735 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 ZNF148Q9UQR1 794 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 CSADQ9Y600 493 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 PPRC1Q5VV67 1664 aaKnown RBP11.61□□□□□ -0.55
RTN3-206ENST00000377819 FGD6Q6ZV73 1430 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 IGSF3O75054 1194 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 YWHAGP61981 247 aaKnown RBP eCLIP11.61□□□□□ -0.55
RTN3-206ENST00000377819 HIF1AQ16665 826 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 AOC3Q16853 763 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 SFMBT2Q5VUG0 894 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 OTUD7BQ6GQQ9 843 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 PLEKHM3Q6ZWE6 761 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 RRM2BQ7LG56 351 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms