RNA–Protein interactions for RNA: ENST00000373548.7

HDAC1-201, Transcript of histone deacetylase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC1, Length 2,124 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-201ENST00000373548 NCAPHQ15003 741 aa22.33■■□□□ 1.16
HDAC1-201ENST00000373548 IL17AQ16552 155 aa22.33■■□□□ 1.16
HDAC1-201ENST00000373548 GRIPAP1Q4V328 841 aa22.33■■□□□ 1.16
HDAC1-201ENST00000373548 KANK3Q6NY19 840 aa22.33■■□□□ 1.16
HDAC1-201ENST00000373548 GRAMD1CQ8IYS0 662 aa22.33■■□□□ 1.16
HDAC1-201ENST00000373548 PI4KBQ9UBF8 816 aa22.33■■□□□ 1.16
HDAC1-201ENST00000373548 TPM3P06753 285 aa22.32■■□□□ 1.16
HDAC1-201ENST00000373548 DPEP1P16444 411 aa22.32■■□□□ 1.16
HDAC1-201ENST00000373548 DHX58Q96C10 678 aa22.32■■□□□ 1.16
HDAC1-201ENST00000373548 MRFAP1L1Q96HT8 127 aa22.32■■□□□ 1.16
HDAC1-201ENST00000373548 KCNF1Q9H3M0 494 aa22.32■■□□□ 1.16
HDAC1-201ENST00000373548 TDRD3Q9H7E2 651 aaKnown RBP22.32■■□□□ 1.16
HDAC1-201ENST00000373548 ZNF543Q08ER8 600 aa22.31■■□□□ 1.16
HDAC1-201ENST00000373548 INF2Q27J81 1249 aa22.31■■□□□ 1.16
HDAC1-201ENST00000373548 CFAP100Q494V2 611 aa22.31■■□□□ 1.16
HDAC1-201ENST00000373548 NT5DC1Q5TFE4 455 aa22.31■■□□□ 1.16
HDAC1-201ENST00000373548 DRC7Q8IY82 874 aa22.31■■□□□ 1.16
HDAC1-201ENST00000373548 RTKN2Q8IZC4 609 aa22.31■■□□□ 1.16
HDAC1-201ENST00000373548 GPCPD1Q9NPB8 672 aa22.31■■□□□ 1.16
HDAC1-201ENST00000373548 KIF13BQ9NQT8 1826 aa22.31■■□□□ 1.16
HDAC1-201ENST00000373548 SMCO2A6NFE2 343 aa22.31■■□□□ 1.16
HDAC1-201ENST00000373548 BMP6P22004 513 aa22.31■■□□□ 1.16
HDAC1-201ENST00000373548 SARSP49591 514 aaKnown RBP22.31■■□□□ 1.16
HDAC1-201ENST00000373548 ARL6IP4Q66PJ3 421 aaKnown RBP22.31■■□□□ 1.16
HDAC1-201ENST00000373548 ZSCAN29Q8IWY8 852 aaPredicted RBP22.31■■□□□ 1.16
HDAC1-201ENST00000373548 SLC16A10Q8TF71 515 aa22.31■■□□□ 1.16
HDAC1-201ENST00000373548 PSMD1Q99460 953 aa22.31■■□□□ 1.16
HDAC1-201ENST00000373548 MAN1B1Q9UKM7 699 aa22.31■■□□□ 1.16
HDAC1-201ENST00000373548 IKBKBO14920 756 aa22.3■■□□□ 1.16
HDAC1-201ENST00000373548 PTGS1P23219 599 aa22.3■■□□□ 1.16
HDAC1-201ENST00000373548 C6orf50Q9HD87 102 aa22.3■■□□□ 1.16
HDAC1-201ENST00000373548 NRBP1Q9UHY1 535 aa22.3■■□□□ 1.16
HDAC1-201ENST00000373548 COL4A5P29400 1685 aa22.3■■□□□ 1.16
HDAC1-201ENST00000373548 SMTNL1A8MU46 457 aa22.3■■□□□ 1.16
HDAC1-201ENST00000373548 SLFN14P0C7P3 912 aa22.3■■□□□ 1.16
HDAC1-201ENST00000373548 SHROOM1Q2M3G4 852 aaPredicted RBP22.3■■□□□ 1.16
HDAC1-201ENST00000373548 PRMT6Q96LA8 375 aaPredicted RBP22.3■■□□□ 1.16
HDAC1-201ENST00000373548 GNA11P29992 359 aa22.29■■□□□ 1.16
HDAC1-201ENST00000373548 ATP2B2Q01814 1243 aa22.29■■□□□ 1.16
HDAC1-201ENST00000373548 CCDC186Q7Z3E2 898 aa22.29■■□□□ 1.16
HDAC1-201ENST00000373548 SH3RF1Q7Z6J0 888 aa22.29■■□□□ 1.16
HDAC1-201ENST00000373548 SMARCE1Q969G3 411 aa22.29■■□□□ 1.16
HDAC1-201ENST00000373548 ESYT2A0FGR8 921 aa22.28■■□□□ 1.16
HDAC1-201ENST00000373548 hCG_1984214I3L0E3 225 aa22.28■■□□□ 1.16
HDAC1-201ENST00000373548 CERKLQ49MI3 558 aaPredicted RBP22.28■■□□□ 1.16
HDAC1-201ENST00000373548 PPP4R3BQ5MIZ7 849 aa22.28■■□□□ 1.16
HDAC1-201ENST00000373548 SOGA3Q5TF21 947 aa22.28■■□□□ 1.16
HDAC1-201ENST00000373548 TATDN1Q6P1N9 297 aa22.28■■□□□ 1.16
HDAC1-201ENST00000373548 KRT25Q7Z3Z0 450 aa22.28■■□□□ 1.16
HDAC1-201ENST00000373548 ZNF713Q8N859 430 aaPredicted RBP22.28■■□□□ 1.16
HDAC1-201ENST00000373548 SPATA20Q8TB22 786 aa22.28■■□□□ 1.16
HDAC1-201ENST00000373548 ATRNL1Q5VV63 1379 aa22.28■■□□□ 1.16
HDAC1-201ENST00000373548 ENTPD3O75355 529 aa22.28■■□□□ 1.16
HDAC1-201ENST00000373548 RSBN1LQ6PCB5 846 aaPredicted RBP22.28■■□□□ 1.16
HDAC1-201ENST00000373548 ZNF277Q9NRM2 450 aaPredicted RBP22.28■■□□□ 1.16
HDAC1-201ENST00000373548 MORC3Q14149 939 aa22.27■■□□□ 1.16
HDAC1-201ENST00000373548 TTBK2Q6IQ55 1244 aa22.27■■□□□ 1.16
HDAC1-201ENST00000373548 LARGE2Q8N3Y3 721 aa22.27■■□□□ 1.16
HDAC1-201ENST00000373548 PAGE5Q96GU1 130 aa22.27■■□□□ 1.16
HDAC1-201ENST00000373548 HSD3B7Q9H2F3 369 aa22.27■■□□□ 1.16
HDAC1-201ENST00000373548 TMEM60Q9H2L4 133 aa22.27■■□□□ 1.16
HDAC1-201ENST00000373548 JMJD4Q9H9V9 463 aa22.27■■□□□ 1.16
HDAC1-201ENST00000373548 RAD17O75943 681 aa22.27■■□□□ 1.15
HDAC1-201ENST00000373548 LONP1P36776 959 aaKnown RBP22.27■■□□□ 1.15
HDAC1-201ENST00000373548 TPM4P67936 248 aa22.27■■□□□ 1.15
HDAC1-201ENST00000373548 E2F4Q16254 413 aa22.27■■□□□ 1.15
HDAC1-201ENST00000373548 GPATCH4Q5T3I0 446 aaKnown RBP22.27■■□□□ 1.15
HDAC1-201ENST00000373548 ADGRF4Q8IZF3 695 aa22.27■■□□□ 1.15
HDAC1-201ENST00000373548 TRIM34Q9BYJ4 488 aa22.27■■□□□ 1.15
HDAC1-201ENST00000373548 COL2A1P02458 1487 aaPredicted RBP22.26■■□□□ 1.15
HDAC1-201ENST00000373548 MYL5Q02045 173 aa22.26■■□□□ 1.15
HDAC1-201ENST00000373548 NONOQ15233 471 aaKnown RBP eCLIP22.26■■□□□ 1.15
HDAC1-201ENST00000373548 CCDC96Q2M329 555 aa22.26■■□□□ 1.15
HDAC1-201ENST00000373548 CCDC144BQ3MJ40 725 aa22.26■■□□□ 1.15
HDAC1-201ENST00000373548 TRIML1Q8N9V2 468 aa22.26■■□□□ 1.15
HDAC1-201ENST00000373548 COA7Q96BR5 231 aa22.26■■□□□ 1.15
HDAC1-201ENST00000373548 CCDC34Q96HJ3 373 aa22.26■■□□□ 1.15
HDAC1-201ENST00000373548 PSMD14O00487 310 aa22.25■■□□□ 1.15
HDAC1-201ENST00000373548 VIL1P09327 827 aaKnown RBP22.25■■□□□ 1.15
HDAC1-201ENST00000373548 EEF2P13639 858 aaKnown RBP22.25■■□□□ 1.15
HDAC1-201ENST00000373548 AFMP43652 599 aa22.25■■□□□ 1.15
HDAC1-201ENST00000373548 MKL1Q969V6 931 aa22.25■■□□□ 1.15
HDAC1-201ENST00000373548 GMLQ99445 158 aa22.25■■□□□ 1.15
HDAC1-201ENST00000373548 KANSL2Q9H9L4 492 aa22.25■■□□□ 1.15
HDAC1-201ENST00000373548 NYAP2Q9P242 653 aa22.25■■□□□ 1.15
HDAC1-201ENST00000373548 OFD1O75665 1012 aa22.25■■□□□ 1.15
HDAC1-201ENST00000373548 KCTD1Q719H9 257 aa22.25■■□□□ 1.15
HDAC1-201ENST00000373548 REXO1Q8N1G1 1221 aaKnown RBP22.25■■□□□ 1.15
HDAC1-201ENST00000373548 GOLGB1Q14789 3259 aaKnown RBP22.24■■□□□ 1.15
HDAC1-201ENST00000373548 PNMA6FA0A0J9YX94 578 aa22.24■■□□□ 1.15
HDAC1-201ENST00000373548 LMOD1P29536 600 aaPredicted RBP22.24■■□□□ 1.15
HDAC1-201ENST00000373548 SEPT2Q15019 361 aa22.24■■□□□ 1.15
HDAC1-201ENST00000373548 SIAH1Q8IUQ4 282 aa22.24■■□□□ 1.15
HDAC1-201ENST00000373548 BIN2Q9UBW5 565 aaPredicted RBP22.24■■□□□ 1.15
HDAC1-201ENST00000373548 PYCARDQ9ULZ3 195 aa22.24■■□□□ 1.15
HDAC1-201ENST00000373548 ARFGEF1Q9Y6D6 1849 aa22.24■■□□□ 1.15
HDAC1-201ENST00000373548 SPDYE2BA6NHP3 402 aa22.24■■□□□ 1.15
HDAC1-201ENST00000373548 PPP1R11O60927 126 aaPredicted RBP22.24■■□□□ 1.15
HDAC1-201ENST00000373548 SMC2O95347 1197 aa22.24■■□□□ 1.15
HDAC1-201ENST00000373548 SPDYE6P0CI01 402 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms