RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 PTCH2Q9Y6C5 1203 aa13.16□□□□□ -0.3
USF1-201ENST00000368019 ZSCAN12O43309 604 aa13.15□□□□□ -0.3
USF1-201ENST00000368019 DTNBO60941 627 aa13.15□□□□□ -0.3
USF1-201ENST00000368019 CDKL5O76039 1030 aa13.15□□□□□ -0.3
USF1-201ENST00000368019 INPP5BP32019 993 aa13.15□□□□□ -0.3
USF1-201ENST00000368019 NDUFA8P51970 172 aa13.15□□□□□ -0.3
USF1-201ENST00000368019 FANCCQ00597 558 aa13.15□□□□□ -0.3
USF1-201ENST00000368019 CEBPZQ03701 1054 aaKnown RBP13.15□□□□□ -0.3
USF1-201ENST00000368019 PPATQ06203 517 aa13.15□□□□□ -0.3
USF1-201ENST00000368019 SLC39A14Q15043 492 aa13.15□□□□□ -0.3
USF1-201ENST00000368019 DPCR1Q3MIW9 517 aa13.15□□□□□ -0.3
USF1-201ENST00000368019 SYNE3Q6ZMZ3 975 aa13.15□□□□□ -0.3
USF1-201ENST00000368019 MIGA2Q7L4E1 593 aa13.15□□□□□ -0.3
USF1-201ENST00000368019 TMC6Q7Z403 805 aa13.15□□□□□ -0.3
USF1-201ENST00000368019 MB21D2Q8IYB1 491 aaPredicted RBP13.15□□□□□ -0.3
USF1-201ENST00000368019 ARHGAP39Q9C0H5 1083 aa13.15□□□□□ -0.3
USF1-201ENST00000368019 MGAMO43451 1857 aa13.14□□□□□ -0.31
USF1-201ENST00000368019 PTPRFP10586 1907 aa13.14□□□□□ -0.31
USF1-201ENST00000368019 EFCAB8A8MWE9 144 aa13.14□□□□□ -0.31
USF1-201ENST00000368019 ZRANB2O95218 330 aaKnown RBP eCLIP13.14□□□□□ -0.31
USF1-201ENST00000368019 SMC2O95347 1197 aa13.14□□□□□ -0.31
USF1-201ENST00000368019 PRDX5P30044 214 aa13.14□□□□□ -0.31
USF1-201ENST00000368019 TUBB4BP68371 445 aa13.14□□□□□ -0.31
USF1-201ENST00000368019 CCT2P78371 535 aaKnown RBP13.14□□□□□ -0.31
USF1-201ENST00000368019 LACTBP83111 547 aaPredicted RBP13.14□□□□□ -0.31
USF1-201ENST00000368019 MYL5Q02045 173 aa13.14□□□□□ -0.31
USF1-201ENST00000368019 NFIAQ12857 509 aa13.14□□□□□ -0.31
USF1-201ENST00000368019 MOGSQ13724 837 aa13.14□□□□□ -0.31
USF1-201ENST00000368019 NAA30Q147X3 362 aaPredicted RBP13.14□□□□□ -0.31
USF1-201ENST00000368019 DIXDC1Q155Q3 683 aa13.14□□□□□ -0.31
USF1-201ENST00000368019 CT47A1Q5JQC4 288 aaPredicted RBP13.14□□□□□ -0.31
USF1-201ENST00000368019 CCDC158Q5M9N0 1113 aa13.14□□□□□ -0.31
USF1-201ENST00000368019 C17orf99Q6UX52 265 aa13.14□□□□□ -0.31
USF1-201ENST00000368019 NCOA7Q8NI08 942 aa13.14□□□□□ -0.31
USF1-201ENST00000368019 FTOQ9C0B1 505 aaKnown RBP eCLIP13.14□□□□□ -0.31
USF1-201ENST00000368019 FAM198AQ9UFP1 575 aa13.14□□□□□ -0.31
USF1-201ENST00000368019 KCNH4Q9UQ05 1017 aa13.14□□□□□ -0.31
USF1-201ENST00000368019 NID2Q14112 1375 aa13.14□□□□□ -0.31
USF1-201ENST00000368019 ADGRA2Q96PE1 1338 aa13.13□□□□□ -0.31
USF1-201ENST00000368019 STK36Q9NRP7 1315 aa13.13□□□□□ -0.31
USF1-201ENST00000368019 DOCK2Q92608 1830 aa13.13□□□□□ -0.31
USF1-201ENST00000368019 GOLIM4O00461 696 aa13.13□□□□□ -0.31
USF1-201ENST00000368019 ARHGAP6O43182 974 aa13.13□□□□□ -0.31
USF1-201ENST00000368019 CUTAO60888 179 aa13.13□□□□□ -0.31
USF1-201ENST00000368019 WDHD1O75717 1129 aaPredicted RBP13.13□□□□□ -0.31
USF1-201ENST00000368019 GNRH1P01148 92 aa13.13□□□□□ -0.31
USF1-201ENST00000368019 SLC9C1Q4G0N8 1177 aa13.13□□□□□ -0.31
USF1-201ENST00000368019 NOL9Q5SY16 702 aaKnown RBP13.13□□□□□ -0.31
USF1-201ENST00000368019 ANKRD23Q86SG2 305 aa13.13□□□□□ -0.31
USF1-201ENST00000368019 MSL3Q8N5Y2 521 aaKnown RBP13.13□□□□□ -0.31
USF1-201ENST00000368019 APPBP2Q92624 585 aa13.13□□□□□ -0.31
USF1-201ENST00000368019 TMEM106CQ9BVX2 250 aa13.13□□□□□ -0.31
USF1-201ENST00000368019 LRRC2Q9BYS8 371 aa13.13□□□□□ -0.31
USF1-201ENST00000368019 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.13□□□□□ -0.31
USF1-201ENST00000368019 TRMT1Q9NXH9 659 aaKnown RBP13.13□□□□□ -0.31
USF1-201ENST00000368019 CEP126Q9P2H0 1117 aa13.13□□□□□ -0.31
USF1-201ENST00000368019 ORC3Q9UBD5 711 aaPredicted RBP13.13□□□□□ -0.31
USF1-201ENST00000368019 AKAP2Q9Y2D5 859 aa13.13□□□□□ -0.31
USF1-201ENST00000368019 ZMYM6O95789 1325 aa13.13□□□□□ -0.31
USF1-201ENST00000368019 ATRNL1Q5VV63 1379 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 PHIPQ8WWQ0 1821 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 A0A1B0GVL5 298 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 SEMA3EO15041 775 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 TADA3O75528 432 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 PFKFB1P16118 471 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 CTGFP29279 349 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 CYP2C19P33261 490 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 PHKA1P46020 1223 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 CLCN6P51797 869 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 PRMT2P55345 433 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 TCP10Q12799 353 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 HABP4Q5JVS0 413 aaKnown RBP13.12□□□□□ -0.31
USF1-201ENST00000368019 TEX35Q5T0J7 233 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 JAKMIP3Q5VZ66 844 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 TRIM65Q6PJ69 517 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 CPLX2Q6PUV4 134 aaKnown RBP13.12□□□□□ -0.31
USF1-201ENST00000368019 TMCO3Q6UWJ1 677 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 SYT10Q6XYQ8 523 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 VSTM4Q8IW00 320 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 ZFPM1Q8IX07 1006 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 TRIML1Q8N9V2 468 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 UBXN4Q92575 508 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 ZNF512BQ96KM6 892 aaPredicted RBP13.12□□□□□ -0.31
USF1-201ENST00000368019 UBXN6Q9BZV1 441 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 TSPYL1Q9H0U9 437 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 HOOK1Q9UJC3 728 aaKnown RBP13.12□□□□□ -0.31
USF1-201ENST00000368019 CLIC4Q9Y696 253 aa13.12□□□□□ -0.31
USF1-201ENST00000368019 PHF20L1A8MW92 1017 aa13.11□□□□□ -0.31
USF1-201ENST00000368019 PRC1O43663 620 aa13.11□□□□□ -0.31
USF1-201ENST00000368019 LDHBP07195 334 aaKnown RBP13.11□□□□□ -0.31
USF1-201ENST00000368019 PNMA6AP0CW24 399 aaPredicted RBP13.11□□□□□ -0.31
USF1-201ENST00000368019 SYKP43405 635 aa13.11□□□□□ -0.31
USF1-201ENST00000368019 SLC20A2Q08357 652 aa13.11□□□□□ -0.31
USF1-201ENST00000368019 TUBB2AQ13885 445 aa13.11□□□□□ -0.31
USF1-201ENST00000368019 KIF22Q14807 665 aa13.11□□□□□ -0.31
USF1-201ENST00000368019 RESP18Q5W5W9 173 aa13.11□□□□□ -0.31
USF1-201ENST00000368019 RALYLQ86SE5 291 aaKnown RBP13.11□□□□□ -0.31
USF1-201ENST00000368019 TUBB2BQ9BVA1 445 aa13.11□□□□□ -0.31
USF1-201ENST00000368019 NCOA5Q9HCD5 579 aaKnown RBP13.11□□□□□ -0.31
USF1-201ENST00000368019 USP40Q9NVE5 1235 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms