RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 STAG1Q8WVM7 1258 aa9.81□□□□□ -0.84
SYNE1-209ENST00000367257 LRWD1Q9UFC0 647 aa9.81□□□□□ -0.84
SYNE1-209ENST00000367257 ASIC3Q9UHC3 531 aa9.81□□□□□ -0.84
SYNE1-209ENST00000367257 PAIP2BQ9ULR5 123 aaKnown RBP9.81□□□□□ -0.84
SYNE1-209ENST00000367257 NIP7Q9Y221 180 aaKnown RBP eCLIP9.81□□□□□ -0.84
SYNE1-209ENST00000367257 FAM83GA6ND36 823 aa9.81□□□□□ -0.84
SYNE1-209ENST00000367257 ATP5JP18859 108 aa9.81□□□□□ -0.84
SYNE1-209ENST00000367257 POLE2P56282 527 aa9.81□□□□□ -0.84
SYNE1-209ENST00000367257 GNGT1P63211 74 aa9.81□□□□□ -0.84
SYNE1-209ENST00000367257 ASPHQ12797 758 aa9.81□□□□□ -0.84
SYNE1-209ENST00000367257 E2F5Q15329 346 aa9.81□□□□□ -0.84
SYNE1-209ENST00000367257 MTHFSDQ2M296 383 aaKnown RBP9.81□□□□□ -0.84
SYNE1-209ENST00000367257 LPIN2Q92539 896 aa9.81□□□□□ -0.84
SYNE1-209ENST00000367257 CTTNBP2NLQ9P2B4 639 aa9.81□□□□□ -0.84
SYNE1-209ENST00000367257 NFE2L3Q9Y4A8 694 aa9.81□□□□□ -0.84
SYNE1-209ENST00000367257 RGS12O14924 1447 aa9.81□□□□□ -0.84
SYNE1-209ENST00000367257 ARID5AQ03989 594 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 AOC3Q16853 763 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 CCHCR1Q8TD31 782 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 LARP6Q9BRS8 491 aaKnown RBP9.8□□□□□ -0.84
SYNE1-209ENST00000367257 LMBRD1Q9NUN5 540 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 MYOM1P52179 1685 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 HMGB3O15347 200 aaKnown RBP9.8□□□□□ -0.84
SYNE1-209ENST00000367257 EIF3DO15371 548 aaKnown RBP eCLIP9.8□□□□□ -0.84
SYNE1-209ENST00000367257 RGS16O15492 202 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-209ENST00000367257 CMA1P23946 247 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 SLC20A2Q08357 652 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 C10orf76Q5T2E6 689 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 PPP1R21Q6ZMI0 780 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 PCDHB13Q9Y5F0 798 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 HSPA1LP34931 641 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 BIRC3Q13489 604 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 SLFN12Q8IYM2 578 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 LRRC2Q9BYS8 371 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 IFIH1Q9BYX4 1025 aaKnown RBP9.8□□□□□ -0.84
SYNE1-209ENST00000367257 CHL1O00533 1208 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 MBD4O95243 580 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 KLHDC4Q8TBB5 520 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 CAPS2Q9BXY5 557 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 TRPC6Q9Y210 931 aa9.8□□□□□ -0.84
SYNE1-209ENST00000367257 RIMS1Q86UR5 1692 aaKnown RBP9.8□□□□□ -0.84
SYNE1-209ENST00000367257 STRCQ7RTU9 1775 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 KRT5P13647 590 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 BPIFB4P59827 614 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 COG7P83436 770 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 NELFBQ8WX92 580 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 TESK2Q96S53 571 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 CNOT10Q9H9A5 744 aaKnown RBP9.79□□□□□ -0.84
SYNE1-209ENST00000367257 MORC2Q9Y6X9 1032 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-209ENST00000367257 MGEA5O60502 916 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 DDAH1O94760 285 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 ETF1P62495 437 aaKnown RBP9.79□□□□□ -0.84
SYNE1-209ENST00000367257 HADHQ16836 314 aaKnown RBP9.79□□□□□ -0.84
SYNE1-209ENST00000367257 GAS2L3Q86XJ1 694 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 ARHGEF2Q92974 986 aaKnown RBP9.79□□□□□ -0.84
SYNE1-209ENST00000367257 UIMC1Q96RL1 719 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 KIAA1468Q9P260 1216 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 SH3TC1Q8TE82 1336 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 IKBKBO14920 756 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 GTPBP6O43824 516 aaPredicted RBP9.79□□□□□ -0.84
SYNE1-209ENST00000367257 ELF1P32519 619 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 GJC1P36383 396 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 LETM2Q2VYF4 491 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 OTUD6AQ7L8S5 288 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 SPDL1Q96EA4 605 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 YIPF3Q9GZM5 350 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 RTEL1Q9NZ71 1219 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 PHLPP2Q6ZVD8 1323 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 SBNO2Q9Y2G9 1366 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 KRT3P12035 628 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 POLD1P28340 1107 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 STX2P32856 288 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 STAT1P42224 750 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 ZNF131P52739 623 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 KRT71Q3SY84 523 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 TSHZ3Q63HK5 1081 aa9.79□□□□□ -0.84
SYNE1-209ENST00000367257 RTCBQ9Y3I0 505 aaKnown RBP9.79□□□□□ -0.84
SYNE1-209ENST00000367257 ZNF189O75820 626 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-209ENST00000367257 HPDP32754 393 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-209ENST00000367257 GARSP41250 739 aaKnown RBP9.78□□□□□ -0.84
SYNE1-209ENST00000367257 ARHGAP4P98171 946 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 SEMA3FQ13275 785 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 KRT40Q6A162 431 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 CABP7Q86V35 215 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 DRC3Q9H069 523 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 BICC1Q9H694 974 aaKnown RBP9.78□□□□□ -0.84
SYNE1-209ENST00000367257 ACTR5Q9H9F9 607 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-209ENST00000367257 ZNF277Q9NRM2 450 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-209ENST00000367257 BACH1O14867 736 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 PFKFB2O60825 505 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 ZFXP17010 805 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-209ENST00000367257 LONP1P36776 959 aaKnown RBP9.78□□□□□ -0.84
SYNE1-209ENST00000367257 TMED1Q13445 227 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 ZNF174Q15697 407 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 SND1Q7KZF4 910 aaKnown RBP eCLIP9.78□□□□□ -0.84
SYNE1-209ENST00000367257 CCDC105Q8IYK2 499 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 VPS16Q9H269 839 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 GPR108Q9NPR9 543 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 POLR2DO15514 142 aaKnown RBP9.78□□□□□ -0.84
SYNE1-209ENST00000367257 RNF8O76064 485 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms