RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 PITPNM1O00562 1244 aa16.66■□□□□ 0.26
VPS29-201ENST00000360579 MBD4O95243 580 aa16.66■□□□□ 0.26
VPS29-201ENST00000360579 IFIT2P09913 472 aaKnown RBP16.66■□□□□ 0.26
VPS29-201ENST00000360579 PCSK9Q8NBP7 692 aaKnown RBP16.66■□□□□ 0.26
VPS29-201ENST00000360579 KLHDC9Q8NEP7 349 aa16.66■□□□□ 0.26
VPS29-201ENST00000360579 DDX11Q96FC9 970 aa16.66■□□□□ 0.26
VPS29-201ENST00000360579 TEX13BQ9BXU2 312 aa16.66■□□□□ 0.26
VPS29-201ENST00000360579 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.66■□□□□ 0.26
VPS29-201ENST00000360579 SPC25Q9HBM1 224 aa16.66■□□□□ 0.26
VPS29-201ENST00000360579 TBX21Q9UL17 535 aa16.66■□□□□ 0.26
VPS29-201ENST00000360579 RAD21O60216 631 aa16.65■□□□□ 0.26
VPS29-201ENST00000360579 DUSP11O75319 330 aaKnown RBP16.65■□□□□ 0.26
VPS29-201ENST00000360579 CST5P28325 142 aaPredicted RBP16.65■□□□□ 0.26
VPS29-201ENST00000360579 KCNA10Q16322 511 aa16.65■□□□□ 0.26
VPS29-201ENST00000360579 MAMDC4Q6UXC1 1216 aa16.65■□□□□ 0.26
VPS29-201ENST00000360579 USP38Q8NB14 1042 aa16.65■□□□□ 0.26
VPS29-201ENST00000360579 REPS2Q8NFH8 660 aa16.65■□□□□ 0.26
VPS29-201ENST00000360579 ATXN2LQ8WWM7 1075 aaKnown RBP16.65■□□□□ 0.26
VPS29-201ENST00000360579 LENG1Q96BZ8 264 aaPredicted RBP16.65■□□□□ 0.26
VPS29-201ENST00000360579 KIF1BPQ96EK5 621 aa16.65■□□□□ 0.26
VPS29-201ENST00000360579 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.65■□□□□ 0.26
VPS29-201ENST00000360579 USP17L12C9JPN9 530 aa16.64■□□□□ 0.25
VPS29-201ENST00000360579 USP17L21D6R901 530 aa16.64■□□□□ 0.25
VPS29-201ENST00000360579 PRKAB2O43741 272 aa16.64■□□□□ 0.25
VPS29-201ENST00000360579 RLBP1P12271 317 aa16.64■□□□□ 0.25
VPS29-201ENST00000360579 ADD2P35612 726 aa16.64■□□□□ 0.25
VPS29-201ENST00000360579 FAM83BQ5T0W9 1011 aa16.64■□□□□ 0.25
VPS29-201ENST00000360579 AKNAD1Q5T1N1 836 aa16.64■□□□□ 0.25
VPS29-201ENST00000360579 CCSAPQ6IQ19 270 aaPredicted RBP16.64■□□□□ 0.25
VPS29-201ENST00000360579 PSRC1Q6PGN9 363 aaPredicted RBP16.64■□□□□ 0.25
VPS29-201ENST00000360579 CCDC129Q6ZRS4 1044 aa16.64■□□□□ 0.25
VPS29-201ENST00000360579 ZNF467Q7Z7K2 595 aaPredicted RBP16.64■□□□□ 0.25
VPS29-201ENST00000360579 TMEM199Q8N511 208 aa16.64■□□□□ 0.25
VPS29-201ENST00000360579 SLF1Q9BQI6 1058 aa16.64■□□□□ 0.25
VPS29-201ENST00000360579 PAG1Q9NWQ8 432 aa16.64■□□□□ 0.25
VPS29-201ENST00000360579 ZHX1Q9UKY1 873 aaPredicted RBP16.64■□□□□ 0.25
VPS29-201ENST00000360579 SMCHD1A6NHR9 2005 aa16.63■□□□□ 0.25
VPS29-201ENST00000360579 SNAI1O95863 264 aaPredicted RBP16.63■□□□□ 0.25
VPS29-201ENST00000360579 SNRNP48Q6IEG0 339 aaKnown RBP16.63■□□□□ 0.25
VPS29-201ENST00000360579 PBX4Q9BYU1 374 aa16.63■□□□□ 0.25
VPS29-201ENST00000360579 PARP14Q460N5 1801 aa16.63■□□□□ 0.25
VPS29-201ENST00000360579 DNAJC25-GNG10A0A024R161 153 aa16.62■□□□□ 0.25
VPS29-201ENST00000360579 CYP2D7A0A087X1C5 515 aa16.62■□□□□ 0.25
VPS29-201ENST00000360579 A0A0U1RQG5 324 aaPredicted RBP16.62■□□□□ 0.25
VPS29-201ENST00000360579 TLR3O15455 904 aaKnown RBP16.62■□□□□ 0.25
VPS29-201ENST00000360579 C6orf222P0C671 652 aaPredicted RBP16.62■□□□□ 0.25
VPS29-201ENST00000360579 COL9A1P20849 921 aa16.62■□□□□ 0.25
VPS29-201ENST00000360579 CDK7P50613 346 aa16.62■□□□□ 0.25
VPS29-201ENST00000360579 UBE3CQ15386 1083 aa16.62■□□□□ 0.25
VPS29-201ENST00000360579 RAB30Q15771 203 aa16.62■□□□□ 0.25
VPS29-201ENST00000360579 TMEM240Q5SV17 173 aa16.62■□□□□ 0.25
VPS29-201ENST00000360579 RASIP1Q5U651 963 aa16.62■□□□□ 0.25
VPS29-201ENST00000360579 PRPF38AQ8NAV1 312 aaKnown RBP16.62■□□□□ 0.25
VPS29-201ENST00000360579 VTI1AQ96AJ9 217 aa16.62■□□□□ 0.25
VPS29-201ENST00000360579 MTIF3Q9H2K0 278 aaKnown RBP16.62■□□□□ 0.25
VPS29-201ENST00000360579 ABHD16BQ9H3Z7 469 aa16.62■□□□□ 0.25
VPS29-201ENST00000360579 THEGQ9P2T0 379 aa16.62■□□□□ 0.25
VPS29-201ENST00000360579 ARPP21Q9UBL0 812 aaPredicted RBP16.62■□□□□ 0.25
VPS29-201ENST00000360579 CTDP1Q9Y5B0 961 aaPredicted RBP16.62■□□□□ 0.25
VPS29-201ENST00000360579 MYH8P13535 1937 aa16.62■□□□□ 0.25
VPS29-201ENST00000360579 ZNFX1Q9P2E3 1918 aaKnown RBP16.62■□□□□ 0.25
VPS29-201ENST00000360579 ARVCFO00192 962 aa16.61■□□□□ 0.25
VPS29-201ENST00000360579 ATP2A1O14983 1001 aa16.61■□□□□ 0.25
VPS29-201ENST00000360579 HMMRO75330 724 aa16.61■□□□□ 0.25
VPS29-201ENST00000360579 ASGR1P07306 291 aa16.61■□□□□ 0.25
VPS29-201ENST00000360579 GJA9P57773 515 aa16.61■□□□□ 0.25
VPS29-201ENST00000360579 ACVR2BQ13705 512 aa16.61■□□□□ 0.25
VPS29-201ENST00000360579 ZSCAN25Q6NSZ9 544 aa16.61■□□□□ 0.25
VPS29-201ENST00000360579 FBXO40Q9UH90 709 aa16.61■□□□□ 0.25
VPS29-201ENST00000360579 MSRAQ9UJ68 235 aa16.61■□□□□ 0.25
VPS29-201ENST00000360579 SLC4A4Q9Y6R1 1079 aa16.61■□□□□ 0.25
VPS29-201ENST00000360579 ZBED9Q6R2W3 1325 aa16.61■□□□□ 0.25
VPS29-201ENST00000360579 PLXNA1Q9UIW2 1896 aa16.61■□□□□ 0.25
VPS29-201ENST00000360579 ZBED4O75132 1171 aa16.6■□□□□ 0.25
VPS29-201ENST00000360579 RAB11FIP3O75154 756 aa16.6■□□□□ 0.25
VPS29-201ENST00000360579 CSF2RAP15509 400 aa16.6■□□□□ 0.25
VPS29-201ENST00000360579 ATP5JP18859 108 aa16.6■□□□□ 0.25
VPS29-201ENST00000360579 GNASQ5JWF2 1037 aa16.6■□□□□ 0.25
VPS29-201ENST00000360579 CTR9Q6PD62 1173 aa16.6■□□□□ 0.25
VPS29-201ENST00000360579 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.6■□□□□ 0.25
VPS29-201ENST00000360579 C16orf59Q7L2K0 433 aa16.6■□□□□ 0.25
VPS29-201ENST00000360579 RPAP2Q8IXW5 612 aaPredicted RBP16.6■□□□□ 0.25
VPS29-201ENST00000360579 ANKRD35Q8N283 1001 aa16.6■□□□□ 0.25
VPS29-201ENST00000360579 PPM1EQ8WY54 764 aa16.6■□□□□ 0.25
VPS29-201ENST00000360579 ASB2Q96Q27 587 aa16.6■□□□□ 0.25
VPS29-201ENST00000360579 UPF3AQ9H1J1 476 aaKnown RBP16.6■□□□□ 0.25
VPS29-201ENST00000360579 BOLA2Q9H3K6 86 aa16.6■□□□□ 0.25
VPS29-201ENST00000360579 PRDM12Q9H4Q4 367 aa16.6■□□□□ 0.25
VPS29-201ENST00000360579 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.6■□□□□ 0.25
VPS29-201ENST00000360579 NYAP2Q9P242 653 aa16.6■□□□□ 0.25
VPS29-201ENST00000360579 COL11A1P12107 1806 aaPredicted RBP16.6■□□□□ 0.25
VPS29-201ENST00000360579 MYADML2A6NDP7 307 aa16.59■□□□□ 0.25
VPS29-201ENST00000360579 F5H6K3 240 aa16.59■□□□□ 0.25
VPS29-201ENST00000360579 SMIM22K7EJ46 135 aa16.59■□□□□ 0.25
VPS29-201ENST00000360579 APBB1O00213 710 aa16.59■□□□□ 0.25
VPS29-201ENST00000360579 PBX2P40425 430 aa16.59■□□□□ 0.25
VPS29-201ENST00000360579 MRPS5P82675 430 aaKnown RBP16.59■□□□□ 0.25
VPS29-201ENST00000360579 KLRC3Q07444 240 aa16.59■□□□□ 0.25
VPS29-201ENST00000360579 CCDC144BQ3MJ40 725 aa16.59■□□□□ 0.25
VPS29-201ENST00000360579 ZNF365Q70YC5 407 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms