RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 ZNF18P17022 549 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 IL17REQ8NFR9 667 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 SPDYE1Q8NFV5 336 aaPredicted RBP8.12□□□□□ -1.11
VPS13A-202ENST00000357409 DESI2Q9BSY9 194 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 ATP2A1O14983 1001 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 PLCG2P16885 1265 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 LTKP29376 864 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 AAMPQ13685 434 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 TMCO5AQ8N6Q1 288 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 HLFQ16534 295 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 ABCB5Q2M3G0 1257 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 ACCSLQ4AC99 568 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 TBC1D32Q96NH3 1257 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 AIFM3Q96NN9 605 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 PLVAPQ9BX97 442 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 BAG2O95816 211 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 CRKLP46109 303 aaKnown RBP8.12□□□□□ -1.11
VPS13A-202ENST00000357409 RPS6KA2Q15349 733 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 BMP2KLQ5H9B9 411 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 DSTYKQ6XUX3 929 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 HFM1A2PYH4 1435 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 AKR1B15C9JRZ8 316 aaPredicted RBP8.12□□□□□ -1.11
VPS13A-202ENST00000357409 OTUD6AQ7L8S5 288 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 USP28Q96RU2 1077 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 SWAP70Q9UH65 585 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 KIAA1024Q9UPX6 916 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 ENC1O14682 589 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 MKRN4PQ13434 485 aaPredicted RBP8.12□□□□□ -1.11
VPS13A-202ENST00000357409 SCN4BQ8IWT1 228 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 ZNF577Q9BSK1 485 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 THAP12O43422 761 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 DEXIO95424 95 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 ZSCAN20P17040 1043 aaPredicted RBP8.12□□□□□ -1.11
VPS13A-202ENST00000357409 GSDMDP57764 484 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 PKNOX2Q96KN3 472 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 ADAM33Q9BZ11 813 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 CCDC78A2IDD5 438 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 H7C0C1 242 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 HMBSP08397 361 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 CASP1P29466 404 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 ATP5OP48047 213 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 ICA1Q05084 483 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 DEFB132Q7Z7B7 95 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 PNMA1Q8ND90 353 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 MTUS1Q9ULD2 1270 aa8.12□□□□□ -1.11
VPS13A-202ENST00000357409 ZNF202O95125 648 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 RPL13P26373 211 aaKnown RBP8.11□□□□□ -1.11
VPS13A-202ENST00000357409 SOX11P35716 441 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 RSAD2Q8WXG1 361 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 TBC1D31Q96DN5 1066 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 NAP1L4Q99733 375 aaKnown RBP8.11□□□□□ -1.11
VPS13A-202ENST00000357409 SH2D4AQ9H788 454 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 RBM28Q9NW13 759 aaKnown RBP8.11□□□□□ -1.11
VPS13A-202ENST00000357409 STIM2Q9P246 746 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 NEMFO60524 1076 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 COPB2P35606 906 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 FBXW4P57775 412 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 LACTBP83111 547 aaPredicted RBP8.11□□□□□ -1.11
VPS13A-202ENST00000357409 SH2D4BQ5SQS7 431 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 KRT40Q6A162 431 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 RSRC2Q7L4I2 434 aaKnown RBP8.11□□□□□ -1.11
VPS13A-202ENST00000357409 SREK1Q8WXA9 508 aaKnown RBP8.11□□□□□ -1.11
VPS13A-202ENST00000357409 KCNK3O14649 394 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 KRT83P78385 493 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 LMCD1Q9NZU5 365 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 HACD3Q9P035 362 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 FGAP02671 866 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 POLR2MP0CAP2 368 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 EVCP57679 992 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 THNSL1Q8IYQ7 743 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 PIGOQ8TEQ8 1089 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 CTAGE1Q96RT6 745 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 MAP10Q9P2G4 905 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 ARPP21Q9UBL0 812 aaPredicted RBP8.11□□□□□ -1.11
VPS13A-202ENST00000357409 TSKSQ9UJT2 592 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 FAM135AQ9P2D6 1515 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 PRR23AA6NEV1 266 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 NR1I2O75469 434 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 MMP10P09238 476 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 XPAP23025 273 aaPredicted RBP8.11□□□□□ -1.11
VPS13A-202ENST00000357409 SLC12A2P55011 1212 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 CTTNQ14247 550 aaKnown RBP8.11□□□□□ -1.11
VPS13A-202ENST00000357409 ARMC9Q7Z3E5 817 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 EFCC1Q9HA90 598 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 PALM3A6NDB9 673 aaPredicted RBP8.11□□□□□ -1.11
VPS13A-202ENST00000357409 TMEM191BP0C7N4 346 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 AFF4Q9UHB7 1163 aaKnown RBP8.11□□□□□ -1.11
VPS13A-202ENST00000357409 GSTA1P08263 222 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 GSTA2P09210 222 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 PHKG2P15735 406 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 ME3Q16798 604 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 KRT26Q7Z3Y9 468 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 RBM46Q8TBY0 533 aaKnown RBP8.11□□□□□ -1.11
VPS13A-202ENST00000357409 CCDC77Q9BR77 488 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 DDX25Q9UHL0 483 aaKnown RBP8.11□□□□□ -1.11
VPS13A-202ENST00000357409 ITM2BQ9Y287 266 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 MX2P20592 715 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 TFAMQ00059 246 aaKnown RBP8.11□□□□□ -1.11
VPS13A-202ENST00000357409 PKP1Q13835 747 aa8.11□□□□□ -1.11
VPS13A-202ENST00000357409 CYFIP1Q7L576 1253 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms