RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ZNF827Q17R98 1081 aa11.39□□□□□ -0.59
USP54-201ENST00000339859 WDR44Q5JSH3 913 aa11.39□□□□□ -0.59
USP54-201ENST00000339859 PNPLA7Q6ZV29 1317 aa11.39□□□□□ -0.59
USP54-201ENST00000339859 FBXO33Q7Z6M2 555 aa11.39□□□□□ -0.59
USP54-201ENST00000339859 AKAP12Q02952 1782 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 CYP2D7A0A087X1C5 515 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 C19orf81C9J6K1 198 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 CMTR1Q8N1G2 835 aaKnown RBP11.38□□□□□ -0.59
USP54-201ENST00000339859 IWS1Q96ST2 819 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 TTC12Q9H892 705 aaPredicted RBP11.38□□□□□ -0.59
USP54-201ENST00000339859 GINM1Q9NU53 330 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 SNAP23O00161 211 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 HARSP12081 509 aaKnown RBP11.38□□□□□ -0.59
USP54-201ENST00000339859 RASSF7Q02833 373 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 MYCT1Q8N699 235 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 NSUN4Q96CB9 384 aaKnown RBP11.38□□□□□ -0.59
USP54-201ENST00000339859 PIGSQ96S52 555 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 MMP19Q99542 508 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 OSBPL5Q9H0X9 879 aaPredicted RBP11.38□□□□□ -0.59
USP54-201ENST00000339859 ABCB11O95342 1321 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 N4BP3O15049 544 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 SFPQP23246 707 aaKnown RBP eCLIP11.38□□□□□ -0.59
USP54-201ENST00000339859 ARHGAP29Q52LW3 1261 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 FAM151AQ8WW52 585 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 PIK3C2AO00443 1686 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 MYOM1P52179 1685 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 ENOX2Q16206 610 aaKnown RBP11.38□□□□□ -0.59
USP54-201ENST00000339859 RCSD1Q6JBY9 416 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 RNF207Q6ZRF8 634 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 FILIP1Q7Z7B0 1213 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 RETREG2Q8NC44 543 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 TDRD7Q8NHU6 1098 aaKnown RBP11.38□□□□□ -0.59
USP54-201ENST00000339859 GRPEL1Q9HAV7 217 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 PDIA3P30101 505 aaKnown RBP11.38□□□□□ -0.59
USP54-201ENST00000339859 GIMAP8Q8ND71 665 aaPredicted RBP11.38□□□□□ -0.59
USP54-201ENST00000339859 ERCC4Q92889 916 aaPredicted RBP11.38□□□□□ -0.59
USP54-201ENST00000339859 ATP6V0A1Q93050 837 aa11.38□□□□□ -0.59
USP54-201ENST00000339859 ZBTB12Q9Y330 459 aaPredicted RBP11.38□□□□□ -0.59
USP54-201ENST00000339859 LAD1O00515 517 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 CETPP11597 493 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 FAM102BQ5T8I3 360 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 FERMT1Q9BQL6 677 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 ZNF577Q9BSK1 485 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 FHDC1Q9C0D6 1143 aaPredicted RBP11.37□□□□□ -0.59
USP54-201ENST00000339859 OR52Z1P0C646 297 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 GCFC2P16383 781 aaKnown RBP11.37□□□□□ -0.59
USP54-201ENST00000339859 TRPC3Q13507 836 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 ALX1Q15699 326 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 ME3Q16798 604 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 ZSCAN12O43309 604 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 CYP21A2P08686 494 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 CEP83Q9Y592 693 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 SORBS3O60504 671 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 CYP2D6P10635 497 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 SEPT2Q15019 361 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 CTR9Q6PD62 1173 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 NOSTRINQ8IVI9 506 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 SPAG5Q96R06 1193 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 PCDHA12Q9UN75 941 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 STX10O60499 249 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 XKR9Q5GH70 373 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 CDC42EP5Q6NZY7 148 aa11.37□□□□□ -0.59
USP54-201ENST00000339859 SLC8A3P57103 927 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 SPP2Q13103 211 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 INF2Q27J81 1249 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 APOA5Q6Q788 366 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 KCNH4Q9UQ05 1017 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 EEF2P13639 858 aaKnown RBP11.36□□□□□ -0.59
USP54-201ENST00000339859 VEGFAP15692 232 aaPredicted RBP11.36□□□□□ -0.59
USP54-201ENST00000339859 IFI16Q16666 785 aaKnown RBP11.36□□□□□ -0.59
USP54-201ENST00000339859 MAEAQ7L5Y9 396 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 SLC17A8Q8NDX2 589 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 WDR11Q9BZH6 1224 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 SH3GLB2Q9NR46 395 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 KCNH3Q9ULD8 1083 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 POLGP54098 1239 aaPredicted RBP11.36□□□□□ -0.59
USP54-201ENST00000339859 SETQ01105 290 aaPredicted RBP11.36□□□□□ -0.59
USP54-201ENST00000339859 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.36□□□□□ -0.59
USP54-201ENST00000339859 DACT1Q9NYF0 836 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 PRPF3O43395 683 aaKnown RBP11.36□□□□□ -0.59
USP54-201ENST00000339859 HUNKP57058 714 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 TRERF1Q96PN7 1200 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 RRAGCQ9HB90 399 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 NFAT5O94916 1531 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 FCER1AP12319 257 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 LIFRP42702 1097 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 GSDMDP57764 484 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 BIRC3Q13489 604 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 TAF1CQ15572 869 aaPredicted RBP11.36□□□□□ -0.59
USP54-201ENST00000339859 LRCH2Q5VUJ6 765 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 ANKRD13AQ8IZ07 590 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 ZSWIM5Q9P217 1185 aa11.36□□□□□ -0.59
USP54-201ENST00000339859 ZNF609O15014 1411 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 LTN1O94822 1766 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 JAK2O60674 1132 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 SEC24BO95487 1268 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 ODR4Q5SWX8 454 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 SNRNP48Q6IEG0 339 aaKnown RBP11.35□□□□□ -0.59
USP54-201ENST00000339859 PPP1R18Q6NYC8 613 aa11.35□□□□□ -0.59
USP54-201ENST00000339859 FAM193BQ96PV7 902 aaPredicted RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms