RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SCYL3Q8IZE3 742 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 NME8Q8N427 588 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 LEO1Q8WVC0 666 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 ANKRD49Q8WVL7 239 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 PDRG1Q9NUG6 133 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 STX18Q9P2W9 335 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 GOLGA8SH3BPF8 625 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 TBC1D12O60347 775 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 GLRX3O76003 335 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 RFX8Q6ZV50 586 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 LEMD2Q8NC56 503 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 BBS1Q8NFJ9 593 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 UBASH3BQ8TF42 649 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 TMEM245Q9H330 911 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 ZSCAN16Q9H4T2 348 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 GIT1Q9Y2X7 761 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 CFLARO15519 480 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 POLR3DP05423 398 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 ARHGAP4P98171 946 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 RSRC2Q7L4I2 434 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 MIGA1Q8NAN2 632 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 FBXO18Q8NFZ0 1043 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 EDEM3Q9BZQ6 932 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 ZNF304Q9HCX3 659 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 CYLC1P35663 651 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 MUM1L1Q5H9M0 696 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 KANK4Q5T7N3 995 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 KIAA0408Q6ZU52 694 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 MYLK4Q86YV6 388 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 SNPHO15079 494 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 TOMM70O94826 608 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 GUCY1A3Q02108 690 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 ARHGAP17Q68EM7 881 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 LLGL2Q6P1M3 1020 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 HS2ST1Q7LGA3 356 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 MTERF3Q96E29 417 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 BCL2L14Q9BZR8 327 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 IPPQ9Y573 584 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 SCRIBQ14160 1630 aa8.34□□□□□ -1.07
LIMCH1-201ENST00000313860 RPN1P04843 607 aaKnown RBP8.34□□□□□ -1.08
LIMCH1-201ENST00000313860 PLS3P13797 630 aa8.34□□□□□ -1.08
LIMCH1-201ENST00000313860 SERPINB10P48595 397 aa8.34□□□□□ -1.08
LIMCH1-201ENST00000313860 HDAC4P56524 1084 aa8.34□□□□□ -1.08
LIMCH1-201ENST00000313860 SLC10A5Q5PT55 438 aa8.34□□□□□ -1.08
LIMCH1-201ENST00000313860 SPAG16Q8N0X2 631 aa8.34□□□□□ -1.08
LIMCH1-201ENST00000313860 ARHGEF1Q92888 912 aaKnown RBP8.34□□□□□ -1.08
LIMCH1-201ENST00000313860 VTI1AQ96AJ9 217 aa8.34□□□□□ -1.08
LIMCH1-201ENST00000313860 CNBD2Q96M20 576 aa8.34□□□□□ -1.08
LIMCH1-201ENST00000313860 HPS4Q9NQG7 708 aa8.34□□□□□ -1.08
LIMCH1-201ENST00000313860 SAMM50Q9Y512 469 aa8.34□□□□□ -1.08
LIMCH1-201ENST00000313860 CCT3P49368 545 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 GRAMD1BQ3KR37 738 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 ACTR5Q9H9F9 607 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 TRPC7Q9HCX4 862 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 USE1Q9NZ43 259 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 PPP2R3AQ06190 1150 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 GABPB1Q06547 395 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 FKBP5Q13451 457 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 ZSCAN26Q16670 478 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 CCDC183Q5T5S1 534 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 OLFML2AQ68BL7 652 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 LMBR1Q8WVP7 490 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 TCP11Q8WWU5 503 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 KIFC1Q9BW19 673 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 ING2Q9H160 280 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 SPINK5Q9NQ38 1064 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 KLHL20Q9Y2M5 609 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 SUGT1Q9Y2Z0 365 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 LRRIQ4A6NIV6 560 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 N4BP3O15049 544 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 SLFN14P0C7P3 912 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 OAS2P29728 719 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 KMT5BQ4FZB7 885 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 CCDC13Q8IYE1 715 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 OR9Q1Q8NGQ5 310 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 BCAS4Q8TDM0 211 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 RFT1Q96AA3 541 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 SKA1Q96BD8 255 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 VPS39Q96JC1 886 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 CATSPER2Q96P56 530 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 FAM167BQ9BTA0 163 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 SMYD2Q9NRG4 433 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 MRPL39Q9NYK5 338 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 SEC63Q9UGP8 760 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 WDR97A6NE52 1622 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 CFAP73A6NFT4 308 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 BTN3A3O00478 584 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 DCTN3O75935 186 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 POLR2FP61218 127 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 POU5F1Q01860 360 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 SEPT2Q15019 361 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 RBM20Q5T481 1227 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 GALNT18Q6P9A2 607 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 NBPF5PQ86XG9 351 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 HIPK4Q8NE63 616 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 RNASE11Q8TAA1 199 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 CCDC74BQ96LY2 380 aa8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 PAIP1Q9H074 479 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-201ENST00000313860 TFIP11Q9UBB9 837 aaKnown RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms