RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 CLUL1Q15846 466 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 PRR5LQ6MZQ0 368 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 USP37Q86T82 979 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 TRIM4Q9C037 500 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 TSPYL2Q9H2G4 693 aaPredicted RBP9.07□□□□□ -0.96
VPS41-202ENST00000310301 SPATS2LQ9NUQ6 558 aaKnown RBP9.07□□□□□ -0.96
VPS41-202ENST00000310301 SLC8A1P32418 973 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 PPM1FP49593 454 aaPredicted RBP9.07□□□□□ -0.96
VPS41-202ENST00000310301 SCNN1DP51172 638 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 SREBF2Q12772 1141 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 RAPGEF1Q13905 1077 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 G2E3Q7L622 706 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 BRAPQ7Z569 592 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 UBR1Q8IWV7 1749 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 MIGA1Q8NAN2 632 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 ZNF594Q96JF6 807 aaPredicted RBP9.07□□□□□ -0.96
VPS41-202ENST00000310301 GDAP1L1Q96MZ0 367 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 ANGEL1Q9UNK9 670 aaKnown RBP9.07□□□□□ -0.96
VPS41-202ENST00000310301 ZNF500O60304 480 aaPredicted RBP9.07□□□□□ -0.96
VPS41-202ENST00000310301 PPFIA4O75335 1185 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 PAK2Q13177 524 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 CDC37L1Q7L3B6 337 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 ZNF710Q8N1W2 664 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 SECISBP2LQ93073 1101 aaKnown RBP9.07□□□□□ -0.96
VPS41-202ENST00000310301 GLT8D2Q9H1C3 349 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 MRPS9P82933 396 aaKnown RBP9.07□□□□□ -0.96
VPS41-202ENST00000310301 TNNI3KQ59H18 835 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 CHST3Q7LGC8 479 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 FPGT-TNNI3KV9GXZ4 949 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 QRICH2Q9H0J4 1663 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 CIAO1O76071 339 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 BRD3Q15059 726 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 RBBP5Q15291 538 aaKnown RBP9.07□□□□□ -0.96
VPS41-202ENST00000310301 SNCBQ16143 134 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 CREB3L3Q68CJ9 461 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 RAB3IPQ96QF0 476 aaPredicted RBP9.07□□□□□ -0.96
VPS41-202ENST00000310301 GREM2Q9H772 168 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 ODF2LQ9ULJ1 636 aa9.07□□□□□ -0.96
VPS41-202ENST00000310301 COL5A2P05997 1499 aaPredicted RBP9.06□□□□□ -0.96
VPS41-202ENST00000310301 ECM2O94769 699 aaPredicted RBP9.06□□□□□ -0.96
VPS41-202ENST00000310301 PDE8BO95263 885 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 RLBP1P12271 317 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 KRT2P35908 639 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 INF2Q27J81 1249 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 TBC1D10BQ4KMP7 808 aaPredicted RBP9.06□□□□□ -0.96
VPS41-202ENST00000310301 KLHL7Q8IXQ5 586 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 CCDC17Q96LX7 622 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 NOC4LQ9BVI4 516 aaKnown RBP9.06□□□□□ -0.96
VPS41-202ENST00000310301 OPHN1O60890 802 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 FMNL1O95466 1100 aaPredicted RBP9.06□□□□□ -0.96
VPS41-202ENST00000310301 HHATQ5VTY9 493 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 ZNF354CQ86Y25 554 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 LEO1Q8WVC0 666 aaPredicted RBP9.06□□□□□ -0.96
VPS41-202ENST00000310301 PLIN2Q99541 437 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 ZNF341Q9BYN7 854 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 PHLPP1O60346 1717 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 FAM13AO94988 1023 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 COG7P83436 770 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 AOC3Q16853 763 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 PLCB1Q9NQ66 1216 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 ARHGAP6O43182 974 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 PFDN1O60925 122 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 HIP1RO75146 1068 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 NBPF3Q9H094 633 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 VPS33BQ9H267 617 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 SAP30BPQ9UHR5 308 aaKnown RBP9.06□□□□□ -0.96
VPS41-202ENST00000310301 CDHR2Q9BYE9 1310 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 GADD45BO75293 160 aaPredicted RBP9.06□□□□□ -0.96
VPS41-202ENST00000310301 COA7Q96BR5 231 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 TBC1D31Q96DN5 1066 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 NOX5Q96PH1 765 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 RTL9Q8NET4 1388 aa9.06□□□□□ -0.96
VPS41-202ENST00000310301 CLRN2A0PK11 232 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 SPDYE3A6NKU9 549 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 GYG1P46976 350 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 IRX5P78411 483 aaPredicted RBP9.05□□□□□ -0.96
VPS41-202ENST00000310301 ATL3Q6DD88 541 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 CROCCP2Q86T23 111 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 MGARPQ8TDB4 240 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 CAPS2Q9BXY5 557 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 USH1CQ9Y6N9 552 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 SMIM24O75264 130 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 MBD4O95243 580 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 RPSAP08865 295 aaKnown RBP9.05□□□□□ -0.96
VPS41-202ENST00000310301 BCAMP50895 628 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 TBC1D8BQ0IIM8 1120 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 MTMR3Q13615 1198 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 MIER3Q7Z3K6 550 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 WHAMMQ8TF30 809 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 PSMB7Q99436 277 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 PAGR1Q9BTK6 254 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 ARPP21Q9UBL0 812 aaPredicted RBP9.05□□□□□ -0.96
VPS41-202ENST00000310301 RRP15Q9Y3B9 282 aaKnown RBP9.05□□□□□ -0.96
VPS41-202ENST00000310301 GOLGA8KD6RF30 607 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 LUC7L3O95232 432 aaKnown RBP9.05□□□□□ -0.96
VPS41-202ENST00000310301 SH3BGRP55822 239 aaPredicted RBP9.05□□□□□ -0.96
VPS41-202ENST00000310301 TIMM10P62072 90 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 SPATS2Q86XZ4 545 aaKnown RBP9.05□□□□□ -0.96
VPS41-202ENST00000310301 IQUBQ8NA54 791 aa9.05□□□□□ -0.96
VPS41-202ENST00000310301 STAG1Q8WVM7 1258 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms