RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 MARCKSP29966 332 aaPredicted RBP17.82■□□□□ 0.44
LSM6-201ENST00000296581 TNFAIP1Q13829 316 aa17.82■□□□□ 0.44
LSM6-201ENST00000296581 RBM43Q6ZSC3 357 aaKnown RBP17.82■□□□□ 0.44
LSM6-201ENST00000296581 ARHGAP27Q6ZUM4 889 aa17.82■□□□□ 0.44
LSM6-201ENST00000296581 GMCL1P1Q8NEA9 526 aa17.82■□□□□ 0.44
LSM6-201ENST00000296581 GPCPD1Q9NPB8 672 aa17.82■□□□□ 0.44
LSM6-201ENST00000296581 NOL7Q9UMY1 257 aaKnown RBP17.82■□□□□ 0.44
LSM6-201ENST00000296581 PCDHB6Q9Y5E3 794 aa17.82■□□□□ 0.44
LSM6-201ENST00000296581 ADAMTS3O15072 1205 aa17.82■□□□□ 0.44
LSM6-201ENST00000296581 CMA1P23946 247 aa17.82■□□□□ 0.44
LSM6-201ENST00000296581 CCDC12Q8WUD4 166 aaPredicted RBP17.82■□□□□ 0.44
LSM6-201ENST00000296581 TSPY26PQ9H489 355 aa17.82■□□□□ 0.44
LSM6-201ENST00000296581 CEP131Q9UPN4 1083 aa17.82■□□□□ 0.44
LSM6-201ENST00000296581 TRAPPC10P48553 1259 aa17.81■□□□□ 0.44
LSM6-201ENST00000296581 NOM1Q5C9Z4 860 aaKnown RBP17.81■□□□□ 0.44
LSM6-201ENST00000296581 SLFN13Q68D06 897 aa17.81■□□□□ 0.44
LSM6-201ENST00000296581 SAMD7Q7Z3H4 446 aa17.81■□□□□ 0.44
LSM6-201ENST00000296581 HOMER1Q86YM7 354 aa17.81■□□□□ 0.44
LSM6-201ENST00000296581 FUCA2Q9BTY2 467 aa17.81■□□□□ 0.44
LSM6-201ENST00000296581 ZMYND12Q9H0C1 365 aa17.81■□□□□ 0.44
LSM6-201ENST00000296581 VAT1LQ9HCJ6 419 aa17.81■□□□□ 0.44
LSM6-201ENST00000296581 TRIM75PA6NK02 468 aa17.81■□□□□ 0.44
LSM6-201ENST00000296581 CUTAO60888 179 aa17.81■□□□□ 0.44
LSM6-201ENST00000296581 RASA3Q14644 834 aa17.81■□□□□ 0.44
LSM6-201ENST00000296581 MAP3K11Q16584 847 aa17.81■□□□□ 0.44
LSM6-201ENST00000296581 CCDC96Q2M329 555 aa17.81■□□□□ 0.44
LSM6-201ENST00000296581 TTBK2Q6IQ55 1244 aa17.81■□□□□ 0.44
LSM6-201ENST00000296581 FMR1NBQ8N0W7 255 aaPredicted RBP17.81■□□□□ 0.44
LSM6-201ENST00000296581 MTMR8Q96EF0 704 aa17.81■□□□□ 0.44
LSM6-201ENST00000296581 RBSNQ9H1K0 784 aa17.81■□□□□ 0.44
LSM6-201ENST00000296581 TNMDQ9H2S6 317 aa17.81■□□□□ 0.44
LSM6-201ENST00000296581 JMJD4Q9H9V9 463 aa17.81■□□□□ 0.44
LSM6-201ENST00000296581 FAM237AA0A1B0GTK4 181 aa17.8■□□□□ 0.44
LSM6-201ENST00000296581 ESYT2A0FGR8 921 aa17.8■□□□□ 0.44
LSM6-201ENST00000296581 KIF4BQ2VIQ3 1234 aa17.8■□□□□ 0.44
LSM6-201ENST00000296581 ADGRF4Q8IZF3 695 aa17.8■□□□□ 0.44
LSM6-201ENST00000296581 GMCL1Q96IK5 515 aa17.8■□□□□ 0.44
LSM6-201ENST00000296581 TEPSINQ96N21 525 aa17.8■□□□□ 0.44
LSM6-201ENST00000296581 ZBTB21Q9ULJ3 1066 aa17.8■□□□□ 0.44
LSM6-201ENST00000296581 F5H6K3 240 aa17.79■□□□□ 0.44
LSM6-201ENST00000296581 SLC1A4P43007 532 aa17.79■□□□□ 0.44
LSM6-201ENST00000296581 NAPAP54920 295 aa17.79■□□□□ 0.44
LSM6-201ENST00000296581 KLRC3Q07444 240 aa17.79■□□□□ 0.44
LSM6-201ENST00000296581 TBC1D10BQ4KMP7 808 aaPredicted RBP17.79■□□□□ 0.44
LSM6-201ENST00000296581 KCTD1Q719H9 257 aa17.79■□□□□ 0.44
LSM6-201ENST00000296581 SMAP1Q8IYB5 467 aaPredicted RBP17.79■□□□□ 0.44
LSM6-201ENST00000296581 KRI1Q8N9T8 703 aaKnown RBP17.79■□□□□ 0.44
LSM6-201ENST00000296581 A0A1B0GVL5 298 aa17.79■□□□□ 0.44
LSM6-201ENST00000296581 BMP15O95972 392 aa17.79■□□□□ 0.44
LSM6-201ENST00000296581 PTPREP23469 700 aa17.79■□□□□ 0.44
LSM6-201ENST00000296581 NDUFA8P51970 172 aa17.79■□□□□ 0.44
LSM6-201ENST00000296581 CAMK4Q16566 473 aa17.79■□□□□ 0.44
LSM6-201ENST00000296581 PIK3AP1Q6ZUJ8 805 aa17.79■□□□□ 0.44
LSM6-201ENST00000296581 GPC2Q8N158 579 aa17.79■□□□□ 0.44
LSM6-201ENST00000296581 SYT17Q9BSW7 474 aa17.79■□□□□ 0.44
LSM6-201ENST00000296581 FBXO2Q9UK22 296 aaPredicted RBP17.79■□□□□ 0.44
LSM6-201ENST00000296581 PCDHA6Q9UN73 950 aa17.79■□□□□ 0.44
LSM6-201ENST00000296581 PCDHA8Q9Y5H6 950 aa17.79■□□□□ 0.44
LSM6-201ENST00000296581 PNMA6FA0A0J9YX94 578 aa17.78■□□□□ 0.44
LSM6-201ENST00000296581 A0A1W2PRG0 241 aa17.78■□□□□ 0.44
LSM6-201ENST00000296581 TTC38Q5R3I4 469 aa17.78■□□□□ 0.44
LSM6-201ENST00000296581 SHC4Q6S5L8 630 aa17.78■□□□□ 0.44
LSM6-201ENST00000296581 C6orf50Q9HD87 102 aa17.78■□□□□ 0.44
LSM6-201ENST00000296581 HACL1Q9UJ83 578 aa17.78■□□□□ 0.44
LSM6-201ENST00000296581 HPSEQ9Y251 543 aa17.78■□□□□ 0.44
LSM6-201ENST00000296581 H7C1D1 291 aa17.78■□□□□ 0.44
LSM6-201ENST00000296581 CTAGE5O15320 804 aa17.78■□□□□ 0.44
LSM6-201ENST00000296581 KINO60870 393 aaKnown RBP17.78■□□□□ 0.44
LSM6-201ENST00000296581 NDUFB10O96000 172 aa17.78■□□□□ 0.44
LSM6-201ENST00000296581 ATP2B1P20020 1258 aa17.78■□□□□ 0.44
LSM6-201ENST00000296581 GNA11P29992 359 aa17.78■□□□□ 0.44
LSM6-201ENST00000296581 CAP2P40123 477 aa17.78■□□□□ 0.44
LSM6-201ENST00000296581 RESP18Q5W5W9 173 aa17.78■□□□□ 0.44
LSM6-201ENST00000296581 MIGA2Q7L4E1 593 aa17.78■□□□□ 0.44
LSM6-201ENST00000296581 ARHGEF10LQ9HCE6 1279 aa17.78■□□□□ 0.44
LSM6-201ENST00000296581 ATAD5Q96QE3 1844 aa17.78■□□□□ 0.44
LSM6-201ENST00000296581 ASTN2O75129 1339 aaPredicted RBP17.78■□□□□ 0.44
LSM6-201ENST00000296581 SMCO2A6NFE2 343 aa17.77■□□□□ 0.44
LSM6-201ENST00000296581 WNT7AO00755 349 aa17.77■□□□□ 0.44
LSM6-201ENST00000296581 PFKFB1P16118 471 aa17.77■□□□□ 0.44
LSM6-201ENST00000296581 PPP1R18Q6NYC8 613 aa17.77■□□□□ 0.44
LSM6-201ENST00000296581 ZNF579Q8NAF0 562 aaKnown RBP17.77■□□□□ 0.44
LSM6-201ENST00000296581 MAP7D2Q96T17 732 aa17.77■□□□□ 0.44
LSM6-201ENST00000296581 GPRC5DQ9NZD1 345 aa17.77■□□□□ 0.44
LSM6-201ENST00000296581 TMX2Q9Y320 296 aa17.77■□□□□ 0.44
LSM6-201ENST00000296581 SRPRBQ9Y5M8 271 aaKnown RBP17.77■□□□□ 0.44
LSM6-201ENST00000296581 ZBTB5O15062 677 aa17.77■□□□□ 0.43
LSM6-201ENST00000296581 SLC16A2P36021 539 aa17.77■□□□□ 0.43
LSM6-201ENST00000296581 CLIC6Q96NY7 704 aa17.77■□□□□ 0.43
LSM6-201ENST00000296581 PHF20L1A8MW92 1017 aa17.76■□□□□ 0.43
LSM6-201ENST00000296581 USP17L10C9JJH3 530 aa17.76■□□□□ 0.43
LSM6-201ENST00000296581 RASGRP4Q8TDF6 673 aa17.76■□□□□ 0.43
LSM6-201ENST00000296581 BBXQ8WY36 941 aaPredicted RBP17.76■□□□□ 0.43
LSM6-201ENST00000296581 CCDC194A0A1B0GVG4 234 aa17.75■□□□□ 0.43
LSM6-201ENST00000296581 PPP1R11O60927 126 aaPredicted RBP17.75■□□□□ 0.43
LSM6-201ENST00000296581 SCAF8Q9UPN6 1271 aaKnown RBP17.75■□□□□ 0.43
LSM6-201ENST00000296581 RAD21O60216 631 aa17.75■□□□□ 0.43
LSM6-201ENST00000296581 CCDC192P0DO97 292 aa17.75■□□□□ 0.43
LSM6-201ENST00000296581 ATP2C1P98194 919 aaPredicted RBP17.75■□□□□ 0.43
LSM6-201ENST00000296581 ZNF174Q15697 407 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms