RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 IFIH1Q9BYX4 1025 aaKnown RBP10.87□□□□□ -0.67
COL6A3-201ENST00000295550 LRRD1A4D1F6 860 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 PDE8AO60658 829 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 GUCY2FP51841 1108 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 PLIN2Q99541 437 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 ATICP31939 592 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 TRAF1Q13077 416 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 PDZD8Q8NEN9 1154 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 DDX41Q9UJV9 622 aaKnown RBP10.87□□□□□ -0.67
COL6A3-201ENST00000295550 VWDEQ8N2E2 1590 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 SERPINB6P35237 376 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 RBM6P78332 1123 aaKnown RBP10.87□□□□□ -0.67
COL6A3-201ENST00000295550 GDAP1L1Q96MZ0 367 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 ADGRB1O14514 1584 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 MYO18AQ92614 2054 aaKnown RBP10.87□□□□□ -0.67
COL6A3-201ENST00000295550 TROVE2P10155 538 aaKnown RBP eCLIP10.87□□□□□ -0.67
COL6A3-201ENST00000295550 KLHL7Q8IXQ5 586 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 CCDC105Q8IYK2 499 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 CABLES1Q8TDN4 633 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 NUP58Q9BVL2 599 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 LTKP29376 864 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 GNGT1P63211 74 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 LGSNQ5TDP6 509 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 USP28Q96RU2 1077 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 CAPS2Q9BXY5 557 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 MED4Q9NPJ6 270 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 BIRC3Q13489 604 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 MTX1Q13505 466 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 PPP2R5DQ14738 602 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 PDCD2Q16342 344 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-201ENST00000295550 OTUD7BQ6GQQ9 843 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 SND1Q7KZF4 910 aaKnown RBP eCLIP10.86□□□□□ -0.67
COL6A3-201ENST00000295550 NLRP3Q96P20 1036 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 PSMB7Q99436 277 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 ZKSCAN3Q9BRR0 538 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 RAB17Q9H0T7 212 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 GPR108Q9NPR9 543 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 NCOA3Q9Y6Q9 1424 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 CACNA1FO60840 1977 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 MX2P20592 715 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 BRD3Q15059 726 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 SV2BQ7L1I2 683 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 PI4K2BQ8TCG2 481 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 SDCCAG3Q96C92 435 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 RPGRIP1Q96KN7 1286 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 LDHBP07195 334 aaKnown RBP10.86□□□□□ -0.67
COL6A3-201ENST00000295550 FCHSD1Q86WN1 690 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 CHAMP1Q96JM3 812 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 PEX26Q7Z412 305 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 HELBQ8NG08 1087 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-201ENST00000295550 SHPRHQ149N8 1683 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 EFCAB8A8MWE9 144 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 FLOT1O75955 427 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 ATP1A2P50993 1020 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 CTSWP56202 376 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 PIK3AP1Q6ZUJ8 805 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 P3H4Q92791 437 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 KRT12Q99456 494 aa10.86□□□□□ -0.67
COL6A3-201ENST00000295550 PSDA5PKW4 1024 aaPredicted RBP10.85□□□□□ -0.67
COL6A3-201ENST00000295550 CCDC117Q8IWD4 279 aaPredicted RBP10.85□□□□□ -0.67
COL6A3-201ENST00000295550 SEPT10Q9P0V9 454 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 C6orf229H3BNL8 230 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 CTNNA1P35221 906 aaKnown RBP10.85□□□□□ -0.67
COL6A3-201ENST00000295550 PPP2R5CQ13362 524 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 AFG3L2Q9Y4W6 797 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 CTDSPL2Q05D32 466 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 TMED1Q13445 227 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 NELFBQ8WX92 580 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 ABTB1Q969K4 478 aaPredicted RBP10.85□□□□□ -0.67
COL6A3-201ENST00000295550 WWC3Q9ULE0 1092 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 CEP104O60308 925 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 PHKG2P15735 406 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 PLS1Q14651 629 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 ZMYM1Q5SVZ6 1142 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 GOLGA8KD6RF30 607 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 KCNQ3O43525 872 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 TBC1D8BQ0IIM8 1120 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 PYCARDQ9ULZ3 195 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 ADAMTS2O95450 1211 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 KRT3P12035 628 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 HSP90AA5PQ58FG0 334 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 VPS37BQ9H9H4 285 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 TNFAIP3P21580 790 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 WDR70Q9NW82 654 aa10.85□□□□□ -0.67
COL6A3-201ENST00000295550 PHLPP2Q6ZVD8 1323 aa10.84□□□□□ -0.67
COL6A3-201ENST00000295550 PRR36Q9H6K5 1346 aa10.84□□□□□ -0.67
COL6A3-201ENST00000295550 RFC4P35249 363 aa10.84□□□□□ -0.67
COL6A3-201ENST00000295550 DMTNQ08495 405 aa10.84□□□□□ -0.67
COL6A3-201ENST00000295550 LRMPQ12912 555 aa10.84□□□□□ -0.67
COL6A3-201ENST00000295550 DRC3Q9H069 523 aa10.84□□□□□ -0.67
COL6A3-201ENST00000295550 VEZTQ9HBM0 779 aa10.84□□□□□ -0.67
COL6A3-201ENST00000295550 DBNLQ9UJU6 430 aaKnown RBP10.84□□□□□ -0.67
COL6A3-201ENST00000295550 PDIA3P30101 505 aaKnown RBP10.84□□□□□ -0.67
COL6A3-201ENST00000295550 ZAP70P43403 619 aa10.84□□□□□ -0.67
COL6A3-201ENST00000295550 ZNF589Q86UQ0 364 aaPredicted RBP10.84□□□□□ -0.67
COL6A3-201ENST00000295550 MYL10Q9BUA6 226 aa10.84□□□□□ -0.67
COL6A3-201ENST00000295550 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.84□□□□□ -0.67
COL6A3-201ENST00000295550 PPP2R2CQ9Y2T4 447 aa10.84□□□□□ -0.67
COL6A3-201ENST00000295550 ORC6Q9Y5N6 252 aa10.84□□□□□ -0.67
COL6A3-201ENST00000295550 NDUFA8P51970 172 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms