RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 DNM1LO00429 736 aa12.4□□□□□ -0.42
VPS50-201ENST00000251739 FLOT1O75955 427 aa12.4□□□□□ -0.42
VPS50-201ENST00000251739 REPS2Q8NFH8 660 aa12.4□□□□□ -0.42
VPS50-201ENST00000251739 SNPHO15079 494 aa12.39□□□□□ -0.43
VPS50-201ENST00000251739 SEPT4O43236 478 aa12.39□□□□□ -0.43
VPS50-201ENST00000251739 SMARCA5O60264 1052 aaPredicted RBP12.39□□□□□ -0.43
VPS50-201ENST00000251739 EEF2P13639 858 aaKnown RBP12.39□□□□□ -0.43
VPS50-201ENST00000251739 TMEM132BQ14DG7 1078 aa12.39□□□□□ -0.43
VPS50-201ENST00000251739 SNX17Q15036 470 aa12.39□□□□□ -0.43
VPS50-201ENST00000251739 SBK1Q52WX2 424 aa12.39□□□□□ -0.43
VPS50-201ENST00000251739 ZSCAN25Q6NSZ9 544 aa12.39□□□□□ -0.43
VPS50-201ENST00000251739 KBTBD3Q8NAB2 608 aa12.39□□□□□ -0.43
VPS50-201ENST00000251739 MAML3Q96JK9 1138 aa12.39□□□□□ -0.43
VPS50-201ENST00000251739 STRBPQ96SI9 672 aaKnown RBP12.39□□□□□ -0.43
VPS50-201ENST00000251739 DCTPP1Q9H773 170 aa12.39□□□□□ -0.43
VPS50-201ENST00000251739 KANSL2Q9H9L4 492 aa12.39□□□□□ -0.43
VPS50-201ENST00000251739 ECHDC1Q9NTX5 307 aa12.39□□□□□ -0.43
VPS50-201ENST00000251739 FBXO28Q9NVF7 368 aa12.39□□□□□ -0.43
VPS50-201ENST00000251739 ARPP21Q9UBL0 812 aaPredicted RBP12.39□□□□□ -0.43
VPS50-201ENST00000251739 ZNF214Q9UL59 606 aaPredicted RBP12.39□□□□□ -0.43
VPS50-201ENST00000251739 SLC4A4Q9Y6R1 1079 aa12.39□□□□□ -0.43
VPS50-201ENST00000251739 UNC80Q8N2C7 3258 aa12.39□□□□□ -0.43
VPS50-201ENST00000251739 GSG1L2A8MUP6 293 aa12.38□□□□□ -0.43
VPS50-201ENST00000251739 RASA1P20936 1047 aa12.38□□□□□ -0.43
VPS50-201ENST00000251739 GIMAP6Q6P9H5 292 aa12.38□□□□□ -0.43
VPS50-201ENST00000251739 DPP9Q86TI2 863 aa12.38□□□□□ -0.43
VPS50-201ENST00000251739 RIOX2Q8IUF8 465 aa12.38□□□□□ -0.43
VPS50-201ENST00000251739 AMOTL1Q8IY63 956 aa12.38□□□□□ -0.43
VPS50-201ENST00000251739 UBE2OQ9C0C9 1292 aaKnown RBP12.38□□□□□ -0.43
VPS50-201ENST00000251739 SENP6Q9GZR1 1112 aaPredicted RBP12.38□□□□□ -0.43
VPS50-201ENST00000251739 EPB41L4AQ9HCS5 686 aaPredicted RBP12.38□□□□□ -0.43
VPS50-201ENST00000251739 PPP1R9AQ9ULJ8 1098 aa12.38□□□□□ -0.43
VPS50-201ENST00000251739 IGKV6D-41A0A0C4DH26 115 aa12.37□□□□□ -0.43
VPS50-201ENST00000251739 VWA5AO00534 786 aa12.37□□□□□ -0.43
VPS50-201ENST00000251739 SLC25A27O95847 323 aa12.37□□□□□ -0.43
VPS50-201ENST00000251739 CNGA1P29973 690 aa12.37□□□□□ -0.43
VPS50-201ENST00000251739 NCAPG2Q86XI2 1143 aa12.37□□□□□ -0.43
VPS50-201ENST00000251739 APPBP2Q92624 585 aa12.37□□□□□ -0.43
VPS50-201ENST00000251739 OSBP2Q969R2 916 aa12.37□□□□□ -0.43
VPS50-201ENST00000251739 DDRGK1Q96HY6 314 aa12.37□□□□□ -0.43
VPS50-201ENST00000251739 BCL11AQ9H165 835 aa12.37□□□□□ -0.43
VPS50-201ENST00000251739 SLC5A4Q9NY91 659 aa12.37□□□□□ -0.43
VPS50-201ENST00000251739 NRBP1Q9UHY1 535 aa12.37□□□□□ -0.43
VPS50-201ENST00000251739 PLIN4Q96Q06 1357 aa12.37□□□□□ -0.43
VPS50-201ENST00000251739 CDH23Q9H251 3354 aa12.36□□□□□ -0.43
VPS50-201ENST00000251739 FCER1AP12319 257 aa12.36□□□□□ -0.43
VPS50-201ENST00000251739 RTP1P59025 263 aa12.36□□□□□ -0.43
VPS50-201ENST00000251739 PLS1Q14651 629 aa12.36□□□□□ -0.43
VPS50-201ENST00000251739 FAM47AQ5JRC9 791 aa12.36□□□□□ -0.43
VPS50-201ENST00000251739 FAM83BQ5T0W9 1011 aa12.36□□□□□ -0.43
VPS50-201ENST00000251739 GJC2Q5T442 439 aaPredicted RBP12.36□□□□□ -0.43
VPS50-201ENST00000251739 ARRDC4Q8NCT1 418 aa12.36□□□□□ -0.43
VPS50-201ENST00000251739 PTCD2Q8WV60 388 aaKnown RBP12.36□□□□□ -0.43
VPS50-201ENST00000251739 GOPCQ9HD26 462 aa12.36□□□□□ -0.43
VPS50-201ENST00000251739 NYAP2Q9P242 653 aa12.36□□□□□ -0.43
VPS50-201ENST00000251739 LRRC37A2A6NM11 1700 aa12.36□□□□□ -0.43
VPS50-201ENST00000251739 COPB2P35606 906 aa12.35□□□□□ -0.43
VPS50-201ENST00000251739 MDM2Q00987 491 aaPredicted RBP12.35□□□□□ -0.43
VPS50-201ENST00000251739 LRRC41Q15345 812 aa12.35□□□□□ -0.43
VPS50-201ENST00000251739 ZNF792Q3KQV3 632 aa12.35□□□□□ -0.43
VPS50-201ENST00000251739 C1orf53Q5VUE5 145 aa12.35□□□□□ -0.43
VPS50-201ENST00000251739 TSHZ3Q63HK5 1081 aa12.35□□□□□ -0.43
VPS50-201ENST00000251739 Q7L0L9 218 aa12.35□□□□□ -0.43
VPS50-201ENST00000251739 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.35□□□□□ -0.43
VPS50-201ENST00000251739 DEFB123Q8N688 67 aa12.35□□□□□ -0.43
VPS50-201ENST00000251739 MTMR10Q9NXD2 777 aa12.35□□□□□ -0.43
VPS50-201ENST00000251739 DIS3Q9Y2L1 958 aaKnown RBP12.35□□□□□ -0.43
VPS50-201ENST00000251739 LCTP09848 1927 aa12.35□□□□□ -0.43
VPS50-201ENST00000251739 KBTBD13C9JR72 458 aa12.34□□□□□ -0.43
VPS50-201ENST00000251739 M0R2C6 588 aa12.34□□□□□ -0.43
VPS50-201ENST00000251739 RNF113AO15541 343 aaKnown RBP12.34□□□□□ -0.43
VPS50-201ENST00000251739 GPAA1O43292 621 aa12.34□□□□□ -0.43
VPS50-201ENST00000251739 NDUFB10O96000 172 aa12.34□□□□□ -0.43
VPS50-201ENST00000251739 PGK2P07205 417 aa12.34□□□□□ -0.43
VPS50-201ENST00000251739 ZFYP08048 801 aaPredicted RBP12.34□□□□□ -0.43
VPS50-201ENST00000251739 STAT3P40763 770 aa12.34□□□□□ -0.43
VPS50-201ENST00000251739 PRAMEF19Q5SWL8 479 aa12.34□□□□□ -0.43
VPS50-201ENST00000251739 ANO1Q5XXA6 986 aa12.34□□□□□ -0.43
VPS50-201ENST00000251739 SLC39A5Q6ZMH5 540 aa12.34□□□□□ -0.43
VPS50-201ENST00000251739 KCNV2Q8TDN2 545 aa12.34□□□□□ -0.43
VPS50-201ENST00000251739 OXER1Q8TDS5 423 aa12.34□□□□□ -0.43
VPS50-201ENST00000251739 MMP19Q99542 508 aa12.34□□□□□ -0.43
VPS50-201ENST00000251739 TINF2Q9BSI4 451 aa12.34□□□□□ -0.43
VPS50-201ENST00000251739 TEX13BQ9BXU2 312 aa12.34□□□□□ -0.43
VPS50-201ENST00000251739 SYNPO2Q9UMS6 1093 aa12.34□□□□□ -0.43
VPS50-201ENST00000251739 PHF24Q9UPV7 400 aa12.34□□□□□ -0.43
VPS50-201ENST00000251739 ARIH1Q9Y4X5 557 aaPredicted RBP12.34□□□□□ -0.43
VPS50-201ENST00000251739 TTC28Q96AY4 2481 aa12.34□□□□□ -0.43
VPS50-201ENST00000251739 EYSQ5T1H1 3165 aa12.34□□□□□ -0.43
VPS50-201ENST00000251739 DNAJC25-GNG10A0A024R161 153 aa12.33□□□□□ -0.44
VPS50-201ENST00000251739 F5H6K3 240 aa12.33□□□□□ -0.44
VPS50-201ENST00000251739 ATP2A1O14983 1001 aa12.33□□□□□ -0.44
VPS50-201ENST00000251739 ZNF865P0CJ78 1059 aaPredicted RBP12.33□□□□□ -0.44
VPS50-201ENST00000251739 TAL1P17542 331 aaPredicted RBP12.33□□□□□ -0.44
VPS50-201ENST00000251739 KLRC3Q07444 240 aa12.33□□□□□ -0.44
VPS50-201ENST00000251739 KCTD2Q14681 263 aa12.33□□□□□ -0.44
VPS50-201ENST00000251739 PI4K2BQ8TCG2 481 aa12.33□□□□□ -0.44
VPS50-201ENST00000251739 MKL1Q969V6 931 aa12.33□□□□□ -0.44
VPS50-201ENST00000251739 GPATCH3Q96I76 525 aa12.33□□□□□ -0.44
VPS50-201ENST00000251739 NUP88Q99567 741 aaPredicted RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms