RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ADAM21Q9UKJ8 722 aa12.1□□□□□ -0.47
USP28-201ENST00000003302 CASZ1Q86V15 1759 aa12.1□□□□□ -0.47
USP28-201ENST00000003302 ZNF263O14978 683 aa12.09□□□□□ -0.47
USP28-201ENST00000003302 KIF4BQ2VIQ3 1234 aa12.09□□□□□ -0.47
USP28-201ENST00000003302 TICAM2Q86XR7 235 aa12.09□□□□□ -0.47
USP28-201ENST00000003302 PRPF3O43395 683 aaKnown RBP12.09□□□□□ -0.47
USP28-201ENST00000003302 HERVK_113P62684 666 aa12.09□□□□□ -0.47
USP28-201ENST00000003302 MMS19Q96T76 1030 aa12.09□□□□□ -0.47
USP28-201ENST00000003302 NUP88Q99567 741 aaPredicted RBP12.09□□□□□ -0.47
USP28-201ENST00000003302 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.09□□□□□ -0.47
USP28-201ENST00000003302 COPB1P53618 953 aaKnown RBP12.09□□□□□ -0.47
USP28-201ENST00000003302 NLRP5P59047 1200 aa12.09□□□□□ -0.47
USP28-201ENST00000003302 CCDC152Q4G0S7 254 aa12.09□□□□□ -0.47
USP28-201ENST00000003302 HDAC7Q8WUI4 952 aa12.09□□□□□ -0.47
USP28-201ENST00000003302 SAP30BPQ9UHR5 308 aaKnown RBP12.09□□□□□ -0.47
USP28-201ENST00000003302 B4DLN1 442 aa12.08□□□□□ -0.47
USP28-201ENST00000003302 KCNJ18B7U540 433 aa12.08□□□□□ -0.47
USP28-201ENST00000003302 KLRC4O43908 158 aa12.08□□□□□ -0.47
USP28-201ENST00000003302 KCNJ12Q14500 433 aa12.08□□□□□ -0.47
USP28-201ENST00000003302 NFIXQ14938 502 aa12.08□□□□□ -0.47
USP28-201ENST00000003302 TCP11X2Q5H9J9 407 aa12.08□□□□□ -0.47
USP28-201ENST00000003302 EHD4Q9H223 541 aa12.08□□□□□ -0.47
USP28-201ENST00000003302 ERCC5P28715 1186 aaPredicted RBP12.08□□□□□ -0.48
USP28-201ENST00000003302 STK4Q13043 487 aa12.08□□□□□ -0.48
USP28-201ENST00000003302 FAN1Q9Y2M0 1017 aa12.08□□□□□ -0.48
USP28-201ENST00000003302 TXLNAP40222 546 aa12.08□□□□□ -0.48
USP28-201ENST00000003302 AMPD2Q01433 879 aa12.08□□□□□ -0.48
USP28-201ENST00000003302 CATIPQ7Z7H3 387 aa12.08□□□□□ -0.48
USP28-201ENST00000003302 UBXN1Q04323 297 aa12.08□□□□□ -0.48
USP28-201ENST00000003302 RAD51AP2Q09MP3 1159 aa12.08□□□□□ -0.48
USP28-201ENST00000003302 SRGAP1Q7Z6B7 1085 aa12.08□□□□□ -0.48
USP28-201ENST00000003302 PANX2Q96RD6 677 aa12.08□□□□□ -0.48
USP28-201ENST00000003302 ZPR1O75312 459 aa12.07□□□□□ -0.48
USP28-201ENST00000003302 SCG2P13521 617 aa12.07□□□□□ -0.48
USP28-201ENST00000003302 AKAP17AQ02040 695 aaKnown RBP12.07□□□□□ -0.48
USP28-201ENST00000003302 GPR161Q8N6U8 529 aaKnown RBP12.07□□□□□ -0.48
USP28-201ENST00000003302 ARFGAP3Q9NP61 516 aa12.07□□□□□ -0.48
USP28-201ENST00000003302 MCM9Q9NXL9 1143 aa12.07□□□□□ -0.48
USP28-201ENST00000003302 MAP2K7O14733 419 aa12.07□□□□□ -0.48
USP28-201ENST00000003302 EDIL3O43854 480 aa12.07□□□□□ -0.48
USP28-201ENST00000003302 TFAP4Q01664 338 aa12.07□□□□□ -0.48
USP28-201ENST00000003302 PPFIBP1Q86W92 1011 aa12.07□□□□□ -0.48
USP28-201ENST00000003302 VPS18Q9P253 973 aa12.07□□□□□ -0.48
USP28-201ENST00000003302 RPN1P04843 607 aaKnown RBP12.07□□□□□ -0.48
USP28-201ENST00000003302 SH3RF3Q8TEJ3 882 aaPredicted RBP12.07□□□□□ -0.48
USP28-201ENST00000003302 WASF1Q92558 559 aa12.07□□□□□ -0.48
USP28-201ENST00000003302 SALL4Q9UJQ4 1053 aa12.07□□□□□ -0.48
USP28-201ENST00000003302 CDC23Q9UJX2 597 aa12.07□□□□□ -0.48
USP28-201ENST00000003302 ANAPC4Q9UJX5 808 aa12.07□□□□□ -0.48
USP28-201ENST00000003302 LMAN1P49257 510 aa12.07□□□□□ -0.48
USP28-201ENST00000003302 DRC1Q96MC2 740 aa12.07□□□□□ -0.48
USP28-201ENST00000003302 DUSP9Q99956 384 aaKnown RBP12.07□□□□□ -0.48
USP28-201ENST00000003302 NUDT12Q9BQG2 462 aa12.07□□□□□ -0.48
USP28-201ENST00000003302 SRRTQ9BXP5 876 aaKnown RBP12.07□□□□□ -0.48
USP28-201ENST00000003302 L1RE1Q9UN81 338 aa12.07□□□□□ -0.48
USP28-201ENST00000003302 TSPY2A6NKD2 308 aa12.06□□□□□ -0.48
USP28-201ENST00000003302 NUTM2BA6NNL0 878 aaPredicted RBP12.06□□□□□ -0.48
USP28-201ENST00000003302 NUTM2EB1AL46 878 aaPredicted RBP12.06□□□□□ -0.48
USP28-201ENST00000003302 CXCR5P32302 372 aa12.06□□□□□ -0.48
USP28-201ENST00000003302 FCHSD1Q86WN1 690 aa12.06□□□□□ -0.48
USP28-201ENST00000003302 GOLGA1Q92805 767 aa12.06□□□□□ -0.48
USP28-201ENST00000003302 PARP1P09874 1014 aaKnown RBP12.06□□□□□ -0.48
USP28-201ENST00000003302 TMC4Q7Z404 712 aa12.06□□□□□ -0.48
USP28-201ENST00000003302 ANKRD13CQ8N6S4 541 aa12.06□□□□□ -0.48
USP28-201ENST00000003302 RABGGTAQ92696 567 aa12.06□□□□□ -0.48
USP28-201ENST00000003302 GSDMAQ96QA5 445 aa12.06□□□□□ -0.48
USP28-201ENST00000003302 VAT1LQ9HCJ6 419 aa12.06□□□□□ -0.48
USP28-201ENST00000003302 TMEM260Q9NX78 707 aa12.06□□□□□ -0.48
USP28-201ENST00000003302 NRDCO43847 1150 aa12.06□□□□□ -0.48
USP28-201ENST00000003302 PAK1Q13153 545 aa12.06□□□□□ -0.48
USP28-201ENST00000003302 FGFBP2Q9BYJ0 223 aa12.06□□□□□ -0.48
USP28-201ENST00000003302 BCAS3Q9H6U6 928 aa12.06□□□□□ -0.48
USP28-201ENST00000003302 M0R2N6 131 aa12.05□□□□□ -0.48
USP28-201ENST00000003302 GTF2E1P29083 439 aaPredicted RBP12.05□□□□□ -0.48
USP28-201ENST00000003302 TXNRD1Q16881 649 aa12.05□□□□□ -0.48
USP28-201ENST00000003302 SHROOM1Q2M3G4 852 aaPredicted RBP12.05□□□□□ -0.48
USP28-201ENST00000003302 USP17L2Q6R6M4 530 aa12.05□□□□□ -0.48
USP28-201ENST00000003302 STX8Q9UNK0 236 aa12.05□□□□□ -0.48
USP28-201ENST00000003302 ANKRD18AQ8IVF6 992 aa12.05□□□□□ -0.48
USP28-201ENST00000003302 TRIML1Q8N9V2 468 aa12.05□□□□□ -0.48
USP28-201ENST00000003302 MAD2L2Q9UI95 211 aa12.05□□□□□ -0.48
USP28-201ENST00000003302 CCDC196A0A1B0GTZ2 297 aa12.05□□□□□ -0.48
USP28-201ENST00000003302 PFKFB3Q16875 520 aaPredicted RBP12.05□□□□□ -0.48
USP28-201ENST00000003302 IQCA1Q86XH1 822 aa12.05□□□□□ -0.48
USP28-201ENST00000003302 LRRC10BA6NIK2 292 aa12.05□□□□□ -0.48
USP28-201ENST00000003302 NDUFA10O95299 355 aa12.05□□□□□ -0.48
USP28-201ENST00000003302 HEATR3Q7Z4Q2 680 aa12.05□□□□□ -0.48
USP28-201ENST00000003302 UBA5Q9GZZ9 404 aa12.05□□□□□ -0.48
USP28-201ENST00000003302 PCDHA6Q9UN73 950 aa12.05□□□□□ -0.48
USP28-201ENST00000003302 PCDHA8Q9Y5H6 950 aa12.05□□□□□ -0.48
USP28-201ENST00000003302 LAMA3Q16787 3333 aa12.05□□□□□ -0.48
USP28-201ENST00000003302 MACROD2A1Z1Q3 448 aa12.04□□□□□ -0.48
USP28-201ENST00000003302 TAL1P17542 331 aaPredicted RBP12.04□□□□□ -0.48
USP28-201ENST00000003302 GNAT2P19087 354 aa12.04□□□□□ -0.48
USP28-201ENST00000003302 EIF6P56537 245 aaKnown RBP12.04□□□□□ -0.48
USP28-201ENST00000003302 ANKRD40Q6AI12 368 aa12.04□□□□□ -0.48
USP28-201ENST00000003302 MAPKAPK5Q8IW41 473 aa12.04□□□□□ -0.48
USP28-201ENST00000003302 PNMA1Q8ND90 353 aa12.04□□□□□ -0.48
USP28-201ENST00000003302 ZNF507Q8TCN5 953 aa12.04□□□□□ -0.48
USP28-201ENST00000003302 RNF41Q9H4P4 317 aaPredicted RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms