RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 HHIPL2Q6UWX4 724 aa17.88■□□□□ 0.45
CLN3-251ENST00000636853 CCDC186Q7Z3E2 898 aa17.88■□□□□ 0.45
CLN3-251ENST00000636853 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.88■□□□□ 0.45
CLN3-251ENST00000636853 C17orf53Q8N3J3 647 aaPredicted RBP17.88■□□□□ 0.45
CLN3-251ENST00000636853 EPSTI1Q96J88 318 aa17.88■□□□□ 0.45
CLN3-251ENST00000636853 SH3GLB2Q9NR46 395 aa17.88■□□□□ 0.45
CLN3-251ENST00000636853 CLIP2Q9UDT6 1046 aa17.88■□□□□ 0.45
CLN3-251ENST00000636853 PCDHA4Q9UN74 947 aa17.88■□□□□ 0.45
CLN3-251ENST00000636853 PRR29P0C7W0 189 aa17.87■□□□□ 0.45
CLN3-251ENST00000636853 AKR1B1P15121 316 aa17.87■□□□□ 0.45
CLN3-251ENST00000636853 CRKP46108 304 aa17.87■□□□□ 0.45
CLN3-251ENST00000636853 GRAMD1CQ8IYS0 662 aa17.87■□□□□ 0.45
CLN3-251ENST00000636853 CAMKK2Q96RR4 588 aa17.87■□□□□ 0.45
CLN3-251ENST00000636853 RGPD3A6NKT7 1758 aaPredicted RBP17.87■□□□□ 0.45
CLN3-251ENST00000636853 RGPD4Q7Z3J3 1758 aa17.87■□□□□ 0.45
CLN3-251ENST00000636853 SCN9AQ15858 1988 aa17.87■□□□□ 0.45
CLN3-251ENST00000636853 ECE2O60344 883 aa17.87■□□□□ 0.45
CLN3-251ENST00000636853 MCM7P33993 719 aa17.87■□□□□ 0.45
CLN3-251ENST00000636853 EIF6P56537 245 aaKnown RBP17.87■□□□□ 0.45
CLN3-251ENST00000636853 NFIAQ12857 509 aa17.87■□□□□ 0.45
CLN3-251ENST00000636853 CLEC10AQ8IUN9 316 aa17.87■□□□□ 0.45
CLN3-251ENST00000636853 OSBPL5Q9H0X9 879 aaPredicted RBP17.87■□□□□ 0.45
CLN3-251ENST00000636853 MORC2Q9Y6X9 1032 aaPredicted RBP17.87■□□□□ 0.45
CLN3-251ENST00000636853 MYH8P13535 1937 aa17.87■□□□□ 0.45
CLN3-251ENST00000636853 A0A087X0B3 334 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 STXBP3O00186 592 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 BMP15O95972 392 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 TPM3P06753 285 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 SLURP2P0DP57 97 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 POSTNQ15063 836 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 LZTS2Q9BRK4 669 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 STK32BQ9NY57 414 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 SERPINB13Q9UIV8 391 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 VWA3AA6NCI4 1184 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 USP17L5A8MUK1 530 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 ACTN4O43707 911 aaKnown RBP17.86■□□□□ 0.45
CLN3-251ENST00000636853 NOVP48745 357 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 ATP2C1P98194 919 aaPredicted RBP17.86■□□□□ 0.45
CLN3-251ENST00000636853 NCAPHQ15003 741 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 HOMER1Q86YM7 354 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 ZFPM1Q8IX07 1006 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 SYMPKQ92797 1274 aaKnown RBP17.86■□□□□ 0.45
CLN3-251ENST00000636853 FERMT2Q96AC1 680 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 DHX58Q96C10 678 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 PDGFDQ9GZP0 370 aaPredicted RBP17.86■□□□□ 0.45
CLN3-251ENST00000636853 VAT1LQ9HCJ6 419 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 BARHL2Q9NY43 387 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 MTMR4Q9NYA4 1195 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 PYCARDQ9ULZ3 195 aa17.86■□□□□ 0.45
CLN3-251ENST00000636853 CDC25BP30305 580 aa17.85■□□□□ 0.45
CLN3-251ENST00000636853 TRAPPC10P48553 1259 aa17.85■□□□□ 0.45
CLN3-251ENST00000636853 CACNB3P54284 484 aa17.85■□□□□ 0.45
CLN3-251ENST00000636853 AOC3Q16853 763 aa17.85■□□□□ 0.45
CLN3-251ENST00000636853 LRRC47Q8N1G4 583 aaKnown RBP17.85■□□□□ 0.45
CLN3-251ENST00000636853 CNKSR1Q969H4 720 aa17.85■□□□□ 0.45
CLN3-251ENST00000636853 MRFAP1L1Q96HT8 127 aa17.85■□□□□ 0.45
CLN3-251ENST00000636853 SPZ1Q9BXG8 430 aa17.85■□□□□ 0.45
CLN3-251ENST00000636853 HOOK1Q9UJC3 728 aaKnown RBP17.85■□□□□ 0.45
CLN3-251ENST00000636853 CCDC144BQ3MJ40 725 aa17.84■□□□□ 0.45
CLN3-251ENST00000636853 DACT2Q5SW24 774 aa17.84■□□□□ 0.45
CLN3-251ENST00000636853 STRIP1Q5VSL9 837 aa17.84■□□□□ 0.45
CLN3-251ENST00000636853 MTERF4Q7Z6M4 381 aaKnown RBP17.84■□□□□ 0.45
CLN3-251ENST00000636853 ELOA2Q8IYF1 753 aaPredicted RBP17.84■□□□□ 0.45
CLN3-251ENST00000636853 UBA5Q9GZZ9 404 aa17.84■□□□□ 0.45
CLN3-251ENST00000636853 FRMPD2Q68DX3 1309 aaPredicted RBP17.84■□□□□ 0.45
CLN3-251ENST00000636853 M0R2N6 131 aa17.84■□□□□ 0.45
CLN3-251ENST00000636853 BMP6P22004 513 aa17.84■□□□□ 0.45
CLN3-251ENST00000636853 RBM5P52756 815 aaKnown RBP eCLIP17.84■□□□□ 0.45
CLN3-251ENST00000636853 TCP10Q12799 353 aa17.84■□□□□ 0.45
CLN3-251ENST00000636853 CCDC148Q8NFR7 591 aa17.84■□□□□ 0.45
CLN3-251ENST00000636853 ZDHHC15Q96MV8 337 aa17.84■□□□□ 0.45
CLN3-251ENST00000636853 MAN1B1Q9UKM7 699 aa17.84■□□□□ 0.45
CLN3-251ENST00000636853 PCDHA6Q9UN73 950 aa17.84■□□□□ 0.45
CLN3-251ENST00000636853 PCDHA8Q9Y5H6 950 aa17.84■□□□□ 0.45
CLN3-251ENST00000636853 PLIN4Q96Q06 1357 aa17.84■□□□□ 0.45
CLN3-251ENST00000636853 SHMT1P34896 483 aa17.83■□□□□ 0.45
CLN3-251ENST00000636853 LRMPQ12912 555 aa17.83■□□□□ 0.45
CLN3-251ENST00000636853 IL17AQ16552 155 aa17.83■□□□□ 0.45
CLN3-251ENST00000636853 C7orf43Q8WVR3 580 aa17.83■□□□□ 0.45
CLN3-251ENST00000636853 CCDC194A0A1B0GVG4 234 aa17.83■□□□□ 0.44
CLN3-251ENST00000636853 SMTNL1A8MU46 457 aa17.83■□□□□ 0.44
CLN3-251ENST00000636853 PDHBP11177 359 aa17.83■□□□□ 0.44
CLN3-251ENST00000636853 SWAP70Q9UH65 585 aa17.83■□□□□ 0.44
CLN3-251ENST00000636853 IGKV6D-41A0A0C4DH26 115 aa17.82■□□□□ 0.44
CLN3-251ENST00000636853 LMOD1P29536 600 aaPredicted RBP17.82■□□□□ 0.44
CLN3-251ENST00000636853 NAPAP54920 295 aa17.82■□□□□ 0.44
CLN3-251ENST00000636853 NOLC1Q14978 699 aaKnown RBP eCLIP17.82■□□□□ 0.44
CLN3-251ENST00000636853 SMARCE1Q969G3 411 aa17.82■□□□□ 0.44
CLN3-251ENST00000636853 RRP36Q96EU6 259 aaKnown RBP17.82■□□□□ 0.44
CLN3-251ENST00000636853 PIGSQ96S52 555 aa17.82■□□□□ 0.44
CLN3-251ENST00000636853 HLA-DOAP06340 250 aa17.82■□□□□ 0.44
CLN3-251ENST00000636853 KANK3Q6NY19 840 aa17.82■□□□□ 0.44
CLN3-251ENST00000636853 DAGLBQ8NCG7 672 aa17.82■□□□□ 0.44
CLN3-251ENST00000636853 MPHOSPH10O00566 681 aaKnown RBP17.81■□□□□ 0.44
CLN3-251ENST00000636853 IKBKBO14920 756 aa17.81■□□□□ 0.44
CLN3-251ENST00000636853 AFMP43652 599 aa17.81■□□□□ 0.44
CLN3-251ENST00000636853 SARSP49591 514 aaKnown RBP17.81■□□□□ 0.44
CLN3-251ENST00000636853 TPM4P67936 248 aa17.81■□□□□ 0.44
CLN3-251ENST00000636853 INF2Q27J81 1249 aa17.81■□□□□ 0.44
CLN3-251ENST00000636853 C4orf32Q8N8J7 132 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms