RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 TARSL2A2RTX5 802 aaKnown RBP7.63□□□□□ -1.19
SCN1A-213ENST00000636759 DIAPH2O60879 1101 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 FAM107AO95990 144 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 ATP4AP20648 1035 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 BLMHQ13867 455 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 PDIA6Q15084 440 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 KCTD16Q68DU8 428 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 GSPT2Q8IYD1 628 aaKnown RBP7.63□□□□□ -1.19
SCN1A-213ENST00000636759 ZFAND2BQ8WV99 257 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 ARHGEF1Q92888 912 aaKnown RBP7.63□□□□□ -1.19
SCN1A-213ENST00000636759 IL1RAPL2Q9NP60 686 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 SPATA31A3Q5VYP0 1347 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 MYO5AQ9Y4I1 1855 aaKnown RBP7.62□□□□□ -1.19
SCN1A-213ENST00000636759 OPLAHO14841 1288 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 TFRCP02786 760 aaKnown RBP7.62□□□□□ -1.19
SCN1A-213ENST00000636759 Q6ZUG5 572 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 LMNTD2Q8IXW0 634 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 CACNA2D3Q8IZS8 1091 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 ARFGAP2Q8N6H7 521 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 CCDC63Q8NA47 563 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 P3H4Q92791 437 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 MKL1Q969V6 931 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 RBM17Q96I25 401 aaKnown RBP7.62□□□□□ -1.19
SCN1A-213ENST00000636759 CDC5LQ99459 802 aaKnown RBP7.62□□□□□ -1.19
SCN1A-213ENST00000636759 AKR1B15C9JRZ8 316 aaPredicted RBP7.62□□□□□ -1.19
SCN1A-213ENST00000636759 STXBP3O00186 592 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 MGRN1O60291 552 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 SCTRP47872 440 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 GUCY1A3Q02108 690 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 NNTQ13423 1086 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 XRCC4Q13426 336 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 NCAPHQ15003 741 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 STK38Q15208 465 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 PTGISQ16647 500 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 ENGASEQ8NFI3 743 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 YIPF2Q9BWQ6 316 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 ZCWPW1Q9H0M4 648 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 SIL1Q9H173 461 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 PPANQ9NQ55 473 aaKnown RBP7.62□□□□□ -1.19
SCN1A-213ENST00000636759 DNAAF2Q9NVR5 837 aaKnown RBP7.62□□□□□ -1.19
SCN1A-213ENST00000636759 AATFQ9NY61 560 aaKnown RBP eCLIP7.62□□□□□ -1.19
SCN1A-213ENST00000636759 SWAP70Q9UH65 585 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 ADGRG1Q9Y653 693 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 AKAP11Q9UKA4 1901 aa7.62□□□□□ -1.19
SCN1A-213ENST00000636759 ATF3P18847 181 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 SEC24CP53992 1094 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 POLE2P56282 527 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 ANKRD20A8PQ5CZ79 823 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 ALS2CLQ60I27 953 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 ATL3Q6DD88 541 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 APLFQ8IW19 511 aaPredicted RBP7.61□□□□□ -1.19
SCN1A-213ENST00000636759 ARL10Q8N8L6 244 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 NAA15Q9BXJ9 866 aaKnown RBP7.61□□□□□ -1.19
SCN1A-213ENST00000636759 RANBP17Q9H2T7 1088 aaKnown RBP7.61□□□□□ -1.19
SCN1A-213ENST00000636759 GOLGA6L10A0A0M3HER8 536 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 SOWAHDA6NJG2 315 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 LINGO3P0C6S8 592 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 ZBED6P86452 979 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 MTF1Q14872 753 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 HSP90AB4PQ58FF6 505 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 CCNI2Q6ZMN8 369 aaPredicted RBP7.61□□□□□ -1.19
SCN1A-213ENST00000636759 TC2NQ8N9U0 490 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 C17orf50Q8WW18 174 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 TRIM7Q9C029 511 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 PHACTR1Q9C0D0 580 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.61□□□□□ -1.192e-7■■■■□ 20
SCN1A-213ENST00000636759 TOGARAM1Q9Y4F4 1720 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 SASH1O94885 1247 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 MYBL1P10243 752 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 NR1D1P20393 614 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 CNGA1P29973 690 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 ELF3P78545 371 aaPredicted RBP7.61□□□□□ -1.19
SCN1A-213ENST00000636759 HSP90AA4PQ58FG1 418 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 NBPF14Q5TI25 921 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 HVCN1Q96D96 273 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 CYFIP2Q96F07 1278 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 USP28Q96RU2 1077 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 SEC62Q99442 399 aaKnown RBP7.61□□□□□ -1.19
SCN1A-213ENST00000636759 L3MBTL1Q9Y468 752 aa7.61□□□□□ -1.19
SCN1A-213ENST00000636759 ZC3H4Q9UPT8 1303 aaKnown RBP7.61□□□□□ -1.19
SCN1A-213ENST00000636759 KDM4FA0A1W2PPD8 638 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 ZNF189O75820 626 aaPredicted RBP7.6□□□□□ -1.19
SCN1A-213ENST00000636759 TAF11Q15544 211 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 PROSER3Q2NL68 480 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 AKNAD1Q5T1N1 836 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 ZNF530Q6P9A1 599 aaPredicted RBP7.6□□□□□ -1.19
SCN1A-213ENST00000636759 FMR1NBQ8N0W7 255 aaPredicted RBP7.6□□□□□ -1.19
SCN1A-213ENST00000636759 SH2D3CQ8N5H7 860 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 TEX9Q8N6V9 391 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 MAP4K1Q92918 833 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 ARL8AQ96BM9 186 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 CAPZA3Q96KX2 299 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 RNPC3Q96LT9 517 aaKnown RBP7.6□□□□□ -1.19
SCN1A-213ENST00000636759 TCEANC2Q96MN5 208 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.6□□□□□ -1.19
SCN1A-213ENST00000636759 CHPF2Q9P2E5 772 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 ARAP2Q8WZ64 1704 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 BTBD11A6QL63 1104 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 M0R2C6 588 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 TOB2Q14106 344 aaPredicted RBP7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms