RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 SH2D4AQ9H788 454 aa21.43■■□□□ 1.02
CLN3-243ENST00000635973 ANO2Q9NQ90 1003 aa21.43■■□□□ 1.02
CLN3-243ENST00000635973 IVNS1ABPQ9Y6Y0 642 aa21.43■■□□□ 1.02
CLN3-243ENST00000635973 U3KPZ7 1027 aaPredicted RBP21.43■■□□□ 1.02
CLN3-243ENST00000635973 TSPY3P0CV98 308 aa21.42■■□□□ 1.02
CLN3-243ENST00000635973 TSPY8P0CW00 308 aa21.42■■□□□ 1.02
CLN3-243ENST00000635973 ATP2B2Q01814 1243 aa21.42■■□□□ 1.02
CLN3-243ENST00000635973 PTH1RQ03431 593 aa21.42■■□□□ 1.02
CLN3-243ENST00000635973 TRIM32Q13049 653 aa21.42■■□□□ 1.02
CLN3-243ENST00000635973 RRP12Q5JTH9 1297 aaKnown RBP21.42■■□□□ 1.02
CLN3-243ENST00000635973 NECAB2Q7Z6G3 386 aa21.42■■□□□ 1.02
CLN3-243ENST00000635973 CRISPLD2Q9H0B8 497 aa21.42■■□□□ 1.02
CLN3-243ENST00000635973 RNF41Q9H4P4 317 aaPredicted RBP21.42■■□□□ 1.02
CLN3-243ENST00000635973 LAMA4Q16363 1823 aa21.41■■□□□ 1.02
CLN3-243ENST00000635973 EVI5O60447 810 aa21.41■■□□□ 1.02
CLN3-243ENST00000635973 RANBP6O60518 1105 aaKnown RBP21.41■■□□□ 1.02
CLN3-243ENST00000635973 PRKAR2AP13861 404 aaKnown RBP21.41■■□□□ 1.02
CLN3-243ENST00000635973 AKNAD1Q5T1N1 836 aa21.41■■□□□ 1.02
CLN3-243ENST00000635973 MFSD6Q6ZSS7 791 aa21.41■■□□□ 1.02
CLN3-243ENST00000635973 CLEC10AQ8IUN9 316 aa21.41■■□□□ 1.02
CLN3-243ENST00000635973 TBC1D10CQ8IV04 446 aa21.41■■□□□ 1.02
CLN3-243ENST00000635973 ANKLE1Q8NAG6 615 aa21.41■■□□□ 1.02
CLN3-243ENST00000635973 HOXC10Q9NYD6 342 aa21.41■■□□□ 1.02
CLN3-243ENST00000635973 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.41■■□□□ 1.02
CLN3-243ENST00000635973 GTF3C3Q9Y5Q9 886 aa21.41■■□□□ 1.02
CLN3-243ENST00000635973 TSPY2A6NKD2 308 aa21.4■■□□□ 1.02
CLN3-243ENST00000635973 PCP11498 1178 aaKnown RBP21.4■■□□□ 1.02
CLN3-243ENST00000635973 COG2Q14746 738 aa21.4■■□□□ 1.02
CLN3-243ENST00000635973 FAM47AQ5JRC9 791 aa21.4■■□□□ 1.02
CLN3-243ENST00000635973 LBX2Q6XYB7 198 aa21.4■■□□□ 1.02
CLN3-243ENST00000635973 STAG1Q8WVM7 1258 aa21.4■■□□□ 1.02
CLN3-243ENST00000635973 PAWRQ96IZ0 340 aaKnown RBP21.4■■□□□ 1.02
CLN3-243ENST00000635973 APBA2Q99767 749 aa21.4■■□□□ 1.02
CLN3-243ENST00000635973 KANSL2Q9H9L4 492 aa21.4■■□□□ 1.02
CLN3-243ENST00000635973 INCENPQ9NQS7 918 aa21.4■■□□□ 1.02
CLN3-243ENST00000635973 A0A1W2PRG0 241 aa21.39■■□□□ 1.01
CLN3-243ENST00000635973 ORC4O43929 436 aa21.39■■□□□ 1.01
CLN3-243ENST00000635973 CNMDO75829 334 aa21.39■■□□□ 1.01
CLN3-243ENST00000635973 TFAP4Q01664 338 aa21.39■■□□□ 1.01
CLN3-243ENST00000635973 MAP2K5Q13163 448 aa21.39■■□□□ 1.01
CLN3-243ENST00000635973 MORN1Q5T089 497 aa21.39■■□□□ 1.01
CLN3-243ENST00000635973 LPAR1Q92633 364 aa21.39■■□□□ 1.01
CLN3-243ENST00000635973 RBM8AQ9Y5S9 174 aaKnown RBP21.39■■□□□ 1.01
CLN3-243ENST00000635973 CEP290O15078 2479 aa21.38■■□□□ 1.01
CLN3-243ENST00000635973 SPDYE16A6NNV3 312 aaPredicted RBP21.38■■□□□ 1.01
CLN3-243ENST00000635973 POTEEQ6S8J3 1075 aa21.38■■□□□ 1.01
CLN3-243ENST00000635973 CHRDL2Q6WN34 429 aa21.38■■□□□ 1.01
CLN3-243ENST00000635973 LSG1Q9H089 658 aaKnown RBP21.38■■□□□ 1.01
CLN3-243ENST00000635973 NBPF3Q9H094 633 aa21.38■■□□□ 1.01
CLN3-243ENST00000635973 BTBD7Q9P203 1132 aa21.38■■□□□ 1.01
CLN3-243ENST00000635973 NEDD4P46934 1319 aa21.37■■□□□ 1.01
CLN3-243ENST00000635973 SLC15A5A6NIM6 579 aa21.37■■□□□ 1.01
CLN3-243ENST00000635973 EEF2P13639 858 aaKnown RBP21.37■■□□□ 1.01
CLN3-243ENST00000635973 PTPREP23469 700 aa21.37■■□□□ 1.01
CLN3-243ENST00000635973 MFSD14CQ5VZR4 134 aa21.37■■□□□ 1.01
CLN3-243ENST00000635973 SAMD1Q6SPF0 538 aaPredicted RBP21.37■■□□□ 1.01
CLN3-243ENST00000635973 USP6NLQ92738 828 aa21.37■■□□□ 1.01
CLN3-243ENST00000635973 MAP4K1Q92918 833 aa21.37■■□□□ 1.01
CLN3-243ENST00000635973 PLIN4Q96Q06 1357 aa21.36■■□□□ 1.01
CLN3-243ENST00000635973 RAD21O60216 631 aa21.36■■□□□ 1.01
CLN3-243ENST00000635973 FLOT1O75955 427 aa21.36■■□□□ 1.01
CLN3-243ENST00000635973 FGRP09769 529 aa21.36■■□□□ 1.01
CLN3-243ENST00000635973 CACNB2Q08289 660 aaPredicted RBP21.36■■□□□ 1.01
CLN3-243ENST00000635973 PLS1Q14651 629 aa21.36■■□□□ 1.01
CLN3-243ENST00000635973 CCL14Q16627 93 aa21.36■■□□□ 1.01
CLN3-243ENST00000635973 MAP3K21Q5TCX8 1036 aa21.36■■□□□ 1.01
CLN3-243ENST00000635973 SPICE1Q8N0Z3 855 aa21.36■■□□□ 1.01
CLN3-243ENST00000635973 NEDD1Q8NHV4 660 aa21.36■■□□□ 1.01
CLN3-243ENST00000635973 ESR2Q92731 530 aa21.36■■□□□ 1.01
CLN3-243ENST00000635973 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.36■■□□□ 1.01
CLN3-243ENST00000635973 TMX2Q9Y320 296 aa21.36■■□□□ 1.01
CLN3-243ENST00000635973 TACC3Q9Y6A5 838 aa21.36■■□□□ 1.01
CLN3-243ENST00000635973 PPP4R3BQ5MIZ7 849 aa21.35■■□□□ 1.01
CLN3-243ENST00000635973 DPP9Q86TI2 863 aa21.35■■□□□ 1.01
CLN3-243ENST00000635973 MB21D1Q8N884 522 aa21.35■■□□□ 1.01
CLN3-243ENST00000635973 DIS3LQ8TF46 1054 aaKnown RBP21.35■■□□□ 1.01
CLN3-243ENST00000635973 CEP95Q96GE4 821 aa21.35■■□□□ 1.01
CLN3-243ENST00000635973 VCPKMTQ9H867 229 aa21.35■■□□□ 1.01
CLN3-243ENST00000635973 CNNM2Q9H8M5 875 aa21.35■■□□□ 1.01
CLN3-243ENST00000635973 GREB1LQ9C091 1923 aaPredicted RBP21.35■■□□□ 1.01
CLN3-243ENST00000635973 TRDNQ13061 729 aa21.34■■□□□ 1.01
CLN3-243ENST00000635973 KRT23Q9C075 422 aa21.34■■□□□ 1.01
CLN3-243ENST00000635973 C11orf49Q9H6J7 331 aa21.34■■□□□ 1.01
CLN3-243ENST00000635973 GOPCQ9HD26 462 aa21.34■■□□□ 1.01
CLN3-243ENST00000635973 OGDHLQ9ULD0 1010 aa21.34■■□□□ 1.01
CLN3-243ENST00000635973 IGKV6D-41A0A0C4DH26 115 aa21.33■■□□□ 1.01
CLN3-243ENST00000635973 WDR46O15213 610 aaKnown RBP21.33■■□□□ 1.01
CLN3-243ENST00000635973 STRNO43815 780 aa21.33■■□□□ 1.01
CLN3-243ENST00000635973 REC8O95072 547 aa21.33■■□□□ 1.01
CLN3-243ENST00000635973 TTLL1O95922 423 aa21.33■■□□□ 1.01
CLN3-243ENST00000635973 CYP21A2P08686 494 aa21.33■■□□□ 1.01
CLN3-243ENST00000635973 CCND3P30281 292 aaPredicted RBP21.33■■□□□ 1.01
CLN3-243ENST00000635973 DSG3P32926 999 aa21.33■■□□□ 1.01
CLN3-243ENST00000635973 MOV10L1Q9BXT6 1211 aaKnown RBP21.33■■□□□ 1.01
CLN3-243ENST00000635973 SPATC1LQ9H0A9 340 aa21.33■■□□□ 1.01
CLN3-243ENST00000635973 MTMR4Q9NYA4 1195 aa21.33■■□□□ 1.01
CLN3-243ENST00000635973 NYAP2Q9P242 653 aa21.33■■□□□ 1.01
CLN3-243ENST00000635973 CLIP2Q9UDT6 1046 aa21.33■■□□□ 1.01
CLN3-243ENST00000635973 STX8Q9UNK0 236 aa21.33■■□□□ 1.01
CLN3-243ENST00000635973 RLFQ13129 1914 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms