RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ATP8B1O43520 1251 aa14.46□□□□□ -0.09
LINC00540-203ENST00000631321 VEGFAP15692 232 aaPredicted RBP14.46□□□□□ -0.09
LINC00540-203ENST00000631321 SPAG1Q07617 926 aa14.46□□□□□ -0.09
LINC00540-203ENST00000631321 TERF2Q15554 542 aa14.46□□□□□ -0.09
LINC00540-203ENST00000631321 DGKHQ86XP1 1220 aa14.46□□□□□ -0.09
LINC00540-203ENST00000631321 CNGA4Q8IV77 575 aa14.46□□□□□ -0.09
LINC00540-203ENST00000631321 MKRN1Q9UHC7 482 aaKnown RBP14.46□□□□□ -0.09
LINC00540-203ENST00000631321 CTNND2Q9UQB3 1225 aa14.46□□□□□ -0.09
LINC00540-203ENST00000631321 MAST2Q6P0Q8 1798 aa14.46□□□□□ -0.1
LINC00540-203ENST00000631321 TAF1P21675 1872 aa14.45□□□□□ -0.1
LINC00540-203ENST00000631321 TSPY2A6NKD2 308 aa14.45□□□□□ -0.1
LINC00540-203ENST00000631321 PNMA6AP0CW24 399 aaPredicted RBP14.45□□□□□ -0.1
LINC00540-203ENST00000631321 GTF2E1P29083 439 aaPredicted RBP14.45□□□□□ -0.1
LINC00540-203ENST00000631321 PPP2R3AQ06190 1150 aa14.45□□□□□ -0.1
LINC00540-203ENST00000631321 RASGRP2Q7LDG7 609 aa14.45□□□□□ -0.1
LINC00540-203ENST00000631321 FAM177A1Q8N128 213 aaPredicted RBP14.45□□□□□ -0.1
LINC00540-203ENST00000631321 GPR161Q8N6U8 529 aaKnown RBP14.45□□□□□ -0.1
LINC00540-203ENST00000631321 NLRP3Q96P20 1036 aa14.45□□□□□ -0.1
LINC00540-203ENST00000631321 RMND1Q9NWS8 449 aa14.45□□□□□ -0.1
LINC00540-203ENST00000631321 ADAMTS3O15072 1205 aa14.45□□□□□ -0.1
LINC00540-203ENST00000631321 GYPCP04921 128 aa14.45□□□□□ -0.1
LINC00540-203ENST00000631321 MCM7P33993 719 aa14.45□□□□□ -0.1
LINC00540-203ENST00000631321 KRT31Q15323 416 aa14.45□□□□□ -0.1
LINC00540-203ENST00000631321 RC3H1Q5TC82 1133 aaKnown RBP14.45□□□□□ -0.1
LINC00540-203ENST00000631321 ZNF658Q5TYW1 1059 aaPredicted RBP14.45□□□□□ -0.1
LINC00540-203ENST00000631321 SPTY2D1Q68D10 685 aaPredicted RBP14.45□□□□□ -0.1
LINC00540-203ENST00000631321 TMCO3Q6UWJ1 677 aa14.45□□□□□ -0.1
LINC00540-203ENST00000631321 BLIDQ8IZY5 108 aa14.45□□□□□ -0.1
LINC00540-203ENST00000631321 TFCP2L1Q9NZI6 479 aa14.45□□□□□ -0.1
LINC00540-203ENST00000631321 NARFQ9UHQ1 456 aa14.45□□□□□ -0.1
LINC00540-203ENST00000631321 ZHX1Q9UKY1 873 aaPredicted RBP14.45□□□□□ -0.1
LINC00540-203ENST00000631321 CASZ1Q86V15 1759 aa14.45□□□□□ -0.1
LINC00540-203ENST00000631321 ROBO3Q96MS0 1386 aa14.45□□□□□ -0.1
LINC00540-203ENST00000631321 M0R2N6 131 aa14.44□□□□□ -0.1
LINC00540-203ENST00000631321 PAK1Q13153 545 aa14.44□□□□□ -0.1
LINC00540-203ENST00000631321 RRAGBQ5VZM2 374 aa14.44□□□□□ -0.1
LINC00540-203ENST00000631321 BICDL1Q6ZP65 573 aa14.44□□□□□ -0.1
LINC00540-203ENST00000631321 CREBRFQ8IUR6 639 aa14.44□□□□□ -0.1
LINC00540-203ENST00000631321 BLZF1Q9H2G9 400 aa14.44□□□□□ -0.1
LINC00540-203ENST00000631321 PCDHA4Q9UN74 947 aa14.44□□□□□ -0.1
LINC00540-203ENST00000631321 GRM4Q14833 912 aa14.44□□□□□ -0.1
LINC00540-203ENST00000631321 KARSQ15046 597 aaKnown RBP14.44□□□□□ -0.1
LINC00540-203ENST00000631321 CCDC178Q5BJE1 867 aa14.44□□□□□ -0.1
LINC00540-203ENST00000631321 C12orf60Q5U649 245 aa14.44□□□□□ -0.1
LINC00540-203ENST00000631321 DAGLBQ8NCG7 672 aa14.44□□□□□ -0.1
LINC00540-203ENST00000631321 RABGGTAQ92696 567 aa14.44□□□□□ -0.1
LINC00540-203ENST00000631321 STAMQ92783 540 aa14.44□□□□□ -0.1
LINC00540-203ENST00000631321 KAT14Q9H8E8 782 aa14.44□□□□□ -0.1
LINC00540-203ENST00000631321 IL17RBQ9NRM6 502 aa14.44□□□□□ -0.1
LINC00540-203ENST00000631321 FAM205AQ6ZU69 1335 aa14.43□□□□□ -0.1
LINC00540-203ENST00000631321 COL24A1Q17RW2 1714 aa14.43□□□□□ -0.1
LINC00540-203ENST00000631321 RPN1P04843 607 aaKnown RBP14.43□□□□□ -0.1
LINC00540-203ENST00000631321 TM4SF1P30408 202 aa14.43□□□□□ -0.1
LINC00540-203ENST00000631321 CASP14P31944 242 aa14.43□□□□□ -0.1
LINC00540-203ENST00000631321 GNAQP50148 359 aa14.43□□□□□ -0.1
LINC00540-203ENST00000631321 TUBB2AQ13885 445 aa14.43□□□□□ -0.1
LINC00540-203ENST00000631321 TRIM14Q14142 442 aa14.43□□□□□ -0.1
LINC00540-203ENST00000631321 TUBB2BQ9BVA1 445 aa14.43□□□□□ -0.1
LINC00540-203ENST00000631321 TCP11L1Q9NUJ3 509 aa14.43□□□□□ -0.1
LINC00540-203ENST00000631321 MCM9Q9NXL9 1143 aa14.43□□□□□ -0.1
LINC00540-203ENST00000631321 PLA2G4AP47712 749 aa14.43□□□□□ -0.1
LINC00540-203ENST00000631321 FXR1P51114 621 aaKnown RBP eCLIP14.43□□□□□ -0.1
LINC00540-203ENST00000631321 COPB1P53618 953 aaKnown RBP14.43□□□□□ -0.1
LINC00540-203ENST00000631321 SEMA3FQ13275 785 aa14.43□□□□□ -0.1
LINC00540-203ENST00000631321 GALNT17Q6IS24 598 aa14.43□□□□□ -0.1
LINC00540-203ENST00000631321 TMTC1Q8IUR5 882 aa14.43□□□□□ -0.1
LINC00540-203ENST00000631321 CCDC12Q8WUD4 166 aaPredicted RBP14.43□□□□□ -0.1
LINC00540-203ENST00000631321 NELFBQ8WX92 580 aa14.43□□□□□ -0.1
LINC00540-203ENST00000631321 SETDB2Q96T68 719 aa14.43□□□□□ -0.1
LINC00540-203ENST00000631321 RPS6KA4O75676 772 aa14.42□□□□□ -0.1
LINC00540-203ENST00000631321 USP17L8P0C7I0 530 aa14.42□□□□□ -0.1
LINC00540-203ENST00000631321 TXLNAP40222 546 aa14.42□□□□□ -0.1
LINC00540-203ENST00000631321 TFAP4Q01664 338 aa14.42□□□□□ -0.1
LINC00540-203ENST00000631321 TCP11X2Q5H9J9 407 aa14.42□□□□□ -0.1
LINC00540-203ENST00000631321 NBPF5PQ86XG9 351 aaPredicted RBP14.42□□□□□ -0.1
LINC00540-203ENST00000631321 PNMA1Q8ND90 353 aa14.42□□□□□ -0.1
LINC00540-203ENST00000631321 CPLX3Q8WVH0 158 aa14.42□□□□□ -0.1
LINC00540-203ENST00000631321 TTF2Q9UNY4 1162 aaKnown RBP14.42□□□□□ -0.1
LINC00540-203ENST00000631321 N4BP3O15049 544 aa14.42□□□□□ -0.1
LINC00540-203ENST00000631321 KIF5CO60282 957 aa14.42□□□□□ -0.1
LINC00540-203ENST00000631321 TXNRD3Q86VQ6 643 aa14.42□□□□□ -0.1
LINC00540-203ENST00000631321 DZIP1Q86YF9 867 aaKnown RBP14.42□□□□□ -0.1
LINC00540-203ENST00000631321 GOLGA1Q92805 767 aa14.42□□□□□ -0.1
LINC00540-203ENST00000631321 UBXN6Q9BZV1 441 aa14.42□□□□□ -0.1
LINC00540-203ENST00000631321 DISC1Q9NRI5 854 aa14.42□□□□□ -0.1
LINC00540-203ENST00000631321 MAD2L2Q9UI95 211 aa14.42□□□□□ -0.1
LINC00540-203ENST00000631321 H7C1D1 291 aa14.41□□□□□ -0.1
LINC00540-203ENST00000631321 MYL1P05976 194 aa14.41□□□□□ -0.1
LINC00540-203ENST00000631321 CCT6AP40227 531 aaKnown RBP14.41□□□□□ -0.1
LINC00540-203ENST00000631321 KCNB1Q14721 858 aa14.41□□□□□ -0.1
LINC00540-203ENST00000631321 ADSSL1Q8N142 457 aa14.41□□□□□ -0.1
LINC00540-203ENST00000631321 ANKRD20A12PQ8NF67 263 aa14.41□□□□□ -0.1
LINC00540-203ENST00000631321 MYH13Q9UKX3 1938 aa14.41□□□□□ -0.1
LINC00540-203ENST00000631321 KCNJ18B7U540 433 aa14.41□□□□□ -0.1
LINC00540-203ENST00000631321 PPP4CP60510 307 aa14.41□□□□□ -0.1
LINC00540-203ENST00000631321 KCNJ12Q14500 433 aa14.41□□□□□ -0.1
LINC00540-203ENST00000631321 SLC35G1Q2M3R5 365 aa14.41□□□□□ -0.1
LINC00540-203ENST00000631321 NAALADL2Q58DX5 795 aa14.41□□□□□ -0.1
LINC00540-203ENST00000631321 WWC2Q6AWC2 1192 aa14.41□□□□□ -0.1
LINC00540-203ENST00000631321 TYW1BQ6NUM6 668 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms