RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 TPM4P67936 248 aa12.12□□□□□ -0.47
CUX1-221ENST00000622516 TMEM132AQ24JP5 1023 aa12.12□□□□□ -0.47
CUX1-221ENST00000622516 ZNF622Q969S3 477 aaKnown RBP eCLIP12.12□□□□□ -0.471e-7■■□□□ 13.1
CUX1-221ENST00000622516 PLIN2Q99541 437 aa12.12□□□□□ -0.47
CUX1-221ENST00000622516 PCDHAC2Q9Y5I4 1007 aa12.12□□□□□ -0.47
CUX1-221ENST00000622516 CCZ1BP86790 482 aa12.11□□□□□ -0.47
CUX1-221ENST00000622516 CCZ1P86791 482 aaPredicted RBP12.11□□□□□ -0.47
CUX1-221ENST00000622516 ARMCX5Q6P1M9 558 aa12.11□□□□□ -0.47
CUX1-221ENST00000622516 C15orf52Q6ZUT6 534 aaKnown RBP12.11□□□□□ -0.47
CUX1-221ENST00000622516 BLIDQ8IZY5 108 aa12.11□□□□□ -0.47
CUX1-221ENST00000622516 ZNF579Q8NAF0 562 aaKnown RBP12.11□□□□□ -0.47
CUX1-221ENST00000622516 MED15Q96RN5 788 aa12.11□□□□□ -0.47
CUX1-221ENST00000622516 TTF2Q9UNY4 1162 aaKnown RBP12.11□□□□□ -0.47
CUX1-221ENST00000622516 LAMB1P07942 1786 aa12.11□□□□□ -0.47
CUX1-221ENST00000622516 BRWD3Q6RI45 1802 aa12.11□□□□□ -0.47
CUX1-221ENST00000622516 FRMPD2Q68DX3 1309 aaPredicted RBP12.11□□□□□ -0.47
CUX1-221ENST00000622516 SRGNP10124 158 aa12.11□□□□□ -0.47
CUX1-221ENST00000622516 CACNB3P54284 484 aa12.11□□□□□ -0.47
CUX1-221ENST00000622516 GRM4Q14833 912 aa12.11□□□□□ -0.47
CUX1-221ENST00000622516 INF2Q27J81 1249 aa12.11□□□□□ -0.47
CUX1-221ENST00000622516 CRAMP1Q96RY5 1269 aa12.11□□□□□ -0.47
CUX1-221ENST00000622516 DBNDD1Q9H9R9 158 aa12.11□□□□□ -0.47
CUX1-221ENST00000622516 DDX4Q9NQI0 724 aaKnown RBP12.11□□□□□ -0.47
CUX1-221ENST00000622516 PP2D1A8MPX8 630 aa12.1□□□□□ -0.47
CUX1-221ENST00000622516 PAGE5Q96GU1 130 aa12.1□□□□□ -0.47
CUX1-221ENST00000622516 SAMSN1Q9NSI8 373 aaKnown RBP12.1□□□□□ -0.47
CUX1-221ENST00000622516 HOOK1Q9UJC3 728 aaKnown RBP12.1□□□□□ -0.47
CUX1-221ENST00000622516 NFE2L3Q9Y4A8 694 aa12.1□□□□□ -0.47
CUX1-221ENST00000622516 USP17L5A8MUK1 530 aa12.1□□□□□ -0.47
CUX1-221ENST00000622516 G3V3G9 751 aa12.1□□□□□ -0.47
CUX1-221ENST00000622516 IKBKBO14920 756 aa12.1□□□□□ -0.47
CUX1-221ENST00000622516 TNNT1P13805 278 aa12.1□□□□□ -0.47
CUX1-221ENST00000622516 ATP2C1P98194 919 aaPredicted RBP12.1□□□□□ -0.47
CUX1-221ENST00000622516 DCAF8Q5TAQ9 597 aa12.1□□□□□ -0.47
CUX1-221ENST00000622516 DPP8Q6V1X1 898 aaPredicted RBP12.1□□□□□ -0.47
CUX1-221ENST00000622516 C16orf86Q6ZW13 317 aa12.1□□□□□ -0.47
CUX1-221ENST00000622516 SP8Q8IXZ3 490 aa12.1□□□□□ -0.47
CUX1-221ENST00000622516 LRRC47Q8N1G4 583 aaKnown RBP12.1□□□□□ -0.47
CUX1-221ENST00000622516 ATP6V0A2Q9Y487 856 aa12.1□□□□□ -0.47
CUX1-221ENST00000622516 RIOK3O14730 519 aaKnown RBP12.09□□□□□ -0.47
CUX1-221ENST00000622516 CDK11BP21127 795 aaKnown RBP12.09□□□□□ -0.47
CUX1-221ENST00000622516 SARSP49591 514 aaKnown RBP12.09□□□□□ -0.47
CUX1-221ENST00000622516 MORC3Q14149 939 aa12.09□□□□□ -0.47
CUX1-221ENST00000622516 DLEC1Q9Y238 1755 aa12.09□□□□□ -0.47
CUX1-221ENST00000622516 CD44P16070 742 aaKnown RBP12.09□□□□□ -0.47
CUX1-221ENST00000622516 ATP2B2Q01814 1243 aa12.09□□□□□ -0.47
CUX1-221ENST00000622516 TMEM60Q9H2L4 133 aa12.09□□□□□ -0.47
CUX1-221ENST00000622516 PCDHA6Q9UN73 950 aa12.09□□□□□ -0.47
CUX1-221ENST00000622516 PCDHA4Q9UN74 947 aa12.09□□□□□ -0.47
CUX1-221ENST00000622516 MAPK8IP1Q9UQF2 711 aa12.09□□□□□ -0.47
CUX1-221ENST00000622516 PCDHA8Q9Y5H6 950 aa12.09□□□□□ -0.47
CUX1-221ENST00000622516 MAST2Q6P0Q8 1798 aa12.09□□□□□ -0.47
CUX1-221ENST00000622516 CCDC194A0A1B0GVG4 234 aa12.09□□□□□ -0.47
CUX1-221ENST00000622516 PALM3A6NDB9 673 aaPredicted RBP12.09□□□□□ -0.47
CUX1-221ENST00000622516 FAM196BA6NMK8 535 aa12.09□□□□□ -0.47
CUX1-221ENST00000622516 RAD21O60216 631 aa12.09□□□□□ -0.47
CUX1-221ENST00000622516 SLFN14P0C7P3 912 aa12.09□□□□□ -0.47
CUX1-221ENST00000622516 MYRIPQ8NFW9 859 aa12.09□□□□□ -0.47
CUX1-221ENST00000622516 FERMT2Q96AC1 680 aa12.09□□□□□ -0.47
CUX1-221ENST00000622516 USP40Q9NVE5 1235 aa12.09□□□□□ -0.47
CUX1-221ENST00000622516 KLRG2A4D1S0 409 aaPredicted RBP12.08□□□□□ -0.48
CUX1-221ENST00000622516 PARP1P09874 1014 aaKnown RBP12.08□□□□□ -0.48
CUX1-221ENST00000622516 AKR1B1P15121 316 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 TERF1P54274 439 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 TCP10Q12799 353 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 NFIAQ12857 509 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 KARSQ15046 597 aaKnown RBP12.08□□□□□ -0.48
CUX1-221ENST00000622516 CREBRFQ8IUR6 639 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 NLGN1Q8N2Q7 840 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 TBC1D22AQ8WUA7 517 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 ANKS1AQ92625 1134 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 PIGSQ96S52 555 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 INTS13Q9NVM9 706 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 ROBO3Q96MS0 1386 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 SNED1Q8TER0 1413 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 STXBP3O00186 592 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 SFPQP23246 707 aaKnown RBP eCLIP12.08□□□□□ -0.481e-6■■■■□ 20.4
CUX1-221ENST00000622516 NAPAP54920 295 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 SHROOM1Q2M3G4 852 aaPredicted RBP12.08□□□□□ -0.48
CUX1-221ENST00000622516 NT5DC1Q5TFE4 455 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 KIAA0825Q8IV33 1275 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 ZFPM1Q8IX07 1006 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 NEDD1Q8NHV4 660 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 MTRQ99707 1265 aa12.08□□□□□ -0.48
CUX1-221ENST00000622516 NAV1Q8NEY1 1877 aa12.07□□□□□ -0.48
CUX1-221ENST00000622516 CUL4BQ13620 913 aa12.07□□□□□ -0.48
CUX1-221ENST00000622516 BBXQ8WY36 941 aaPredicted RBP12.07□□□□□ -0.48
CUX1-221ENST00000622516 OSBPL5Q9H0X9 879 aaPredicted RBP12.07□□□□□ -0.48
CUX1-221ENST00000622516 ZNF287Q9HBT7 754 aa12.07□□□□□ -0.48
CUX1-221ENST00000622516 GPCPD1Q9NPB8 672 aa12.07□□□□□ -0.48
CUX1-221ENST00000622516 TCP11L1Q9NUJ3 509 aa12.07□□□□□ -0.48
CUX1-221ENST00000622516 CDK5RAP2Q96SN8 1893 aa12.07□□□□□ -0.48
CUX1-221ENST00000622516 GAKO14976 1311 aa12.07□□□□□ -0.48
CUX1-221ENST00000622516 MPHOSPH10O00566 681 aaKnown RBP12.07□□□□□ -0.48
CUX1-221ENST00000622516 PLCG2P16885 1265 aa12.07□□□□□ -0.48
CUX1-221ENST00000622516 CALML3P27482 149 aa12.07□□□□□ -0.48
CUX1-221ENST00000622516 C4orf32Q8N8J7 132 aa12.07□□□□□ -0.48
CUX1-221ENST00000622516 RASSF8Q8NHQ8 419 aa12.07□□□□□ -0.48
CUX1-221ENST00000622516 COA1Q9GZY4 146 aa12.07□□□□□ -0.48
CUX1-221ENST00000622516 BARHL2Q9NY43 387 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms