RNA–Protein interactions for RNA: ENST00000619655.4

MMP28-207, Transcript of matrix metallopeptidase 28, humanhuman

TSL 2

Gene MMP28, Length 2,336 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-207ENST00000619655 PLIN4Q96Q06 1357 aa23.08■■□□□ 1.29
MMP28-207ENST00000619655 CALML3P27482 149 aa23.08■■□□□ 1.28
MMP28-207ENST00000619655 HDLBPQ00341 1268 aaKnown RBP23.08■■□□□ 1.28
MMP28-207ENST00000619655 ISM2Q6H9L7 571 aa23.08■■□□□ 1.28
MMP28-207ENST00000619655 RTKN2Q8IZC4 609 aa23.08■■□□□ 1.28
MMP28-207ENST00000619655 LZTS2Q9BRK4 669 aa23.08■■□□□ 1.28
MMP28-207ENST00000619655 MRIQ9BWK5 157 aa23.08■■□□□ 1.28
MMP28-207ENST00000619655 CSRNP2Q9H175 543 aa23.08■■□□□ 1.28
MMP28-207ENST00000619655 FAM13BQ9NYF5 915 aa23.08■■□□□ 1.28
MMP28-207ENST00000619655 SRPRBQ9Y5M8 271 aaKnown RBP23.08■■□□□ 1.28
MMP28-207ENST00000619655 LONRF3Q496Y0 759 aa23.07■■□□□ 1.28
MMP28-207ENST00000619655 DNAJC18Q9H819 358 aa23.07■■□□□ 1.28
MMP28-207ENST00000619655 PCDHA4Q9UN74 947 aa23.07■■□□□ 1.28
MMP28-207ENST00000619655 TTLL1O95922 423 aa23.07■■□□□ 1.28
MMP28-207ENST00000619655 PDHBP11177 359 aa23.07■■□□□ 1.28
MMP28-207ENST00000619655 PDILTQ8N807 584 aa23.07■■□□□ 1.28
MMP28-207ENST00000619655 CNNM3Q8NE01 707 aa23.07■■□□□ 1.28
MMP28-207ENST00000619655 SLC16A10Q8TF71 515 aa23.07■■□□□ 1.28
MMP28-207ENST00000619655 TRIM34Q9BYJ4 488 aa23.07■■□□□ 1.28
MMP28-207ENST00000619655 SH3GLB2Q9NR46 395 aa23.07■■□□□ 1.28
MMP28-207ENST00000619655 PPP1R1BQ9UD71 204 aaPredicted RBP23.07■■□□□ 1.28
MMP28-207ENST00000619655 CCDC39Q9UFE4 941 aa23.07■■□□□ 1.28
MMP28-207ENST00000619655 ATF5Q9Y2D1 282 aaPredicted RBP23.07■■□□□ 1.28
MMP28-207ENST00000619655 RAD21O60216 631 aa23.06■■□□□ 1.28
MMP28-207ENST00000619655 PNOCQ13519 176 aa23.06■■□□□ 1.28
MMP28-207ENST00000619655 PRMT6Q96LA8 375 aaPredicted RBP23.06■■□□□ 1.28
MMP28-207ENST00000619655 SPZ1Q9BXG8 430 aa23.06■■□□□ 1.28
MMP28-207ENST00000619655 BARHL2Q9NY43 387 aa23.06■■□□□ 1.28
MMP28-207ENST00000619655 SEC63Q9UGP8 760 aaKnown RBP23.06■■□□□ 1.28
MMP28-207ENST00000619655 GOLGA6L19H0YKK7 550 aa23.05■■□□□ 1.28
MMP28-207ENST00000619655 STXBP3O00186 592 aa23.05■■□□□ 1.28
MMP28-207ENST00000619655 MCM7P33993 719 aa23.05■■□□□ 1.28
MMP28-207ENST00000619655 NOVP48745 357 aa23.05■■□□□ 1.28
MMP28-207ENST00000619655 SHROOM1Q2M3G4 852 aaPredicted RBP23.05■■□□□ 1.28
MMP28-207ENST00000619655 USP49Q70CQ1 688 aa23.05■■□□□ 1.28
MMP28-207ENST00000619655 SH3BP5LQ7L8J4 393 aa23.05■■□□□ 1.28
MMP28-207ENST00000619655 CCDC148Q8NFR7 591 aa23.05■■□□□ 1.28
MMP28-207ENST00000619655 RRP36Q96EU6 259 aaKnown RBP23.05■■□□□ 1.28
MMP28-207ENST00000619655 TIGD1Q96MW7 591 aa23.05■■□□□ 1.28
MMP28-207ENST00000619655 PIGSQ96S52 555 aa23.05■■□□□ 1.28
MMP28-207ENST00000619655 IDI2Q9BXS1 227 aa23.05■■□□□ 1.28
MMP28-207ENST00000619655 DHX36Q9H2U1 1008 aaKnown RBP23.05■■□□□ 1.28
MMP28-207ENST00000619655 IGKV6D-41A0A0C4DH26 115 aa23.05■■□□□ 1.28
MMP28-207ENST00000619655 FAM237AA0A1B0GTK4 181 aa23.05■■□□□ 1.28
MMP28-207ENST00000619655 POLR2DO15514 142 aaKnown RBP23.05■■□□□ 1.28
MMP28-207ENST00000619655 CAVIN2O95810 425 aa23.05■■□□□ 1.28
MMP28-207ENST00000619655 NAPAP54920 295 aa23.05■■□□□ 1.28
MMP28-207ENST00000619655 DPCR1Q3MIW9 517 aa23.05■■□□□ 1.28
MMP28-207ENST00000619655 CEP57L1Q8IYX8 460 aa23.05■■□□□ 1.28
MMP28-207ENST00000619655 GPCPD1Q9NPB8 672 aa23.05■■□□□ 1.28
MMP28-207ENST00000619655 BECN2A8MW95 431 aa23.04■■□□□ 1.28
MMP28-207ENST00000619655 PTGDRQ13258 359 aa23.04■■□□□ 1.28
MMP28-207ENST00000619655 KRBA2Q6ZNG9 492 aa23.04■■□□□ 1.28
MMP28-207ENST00000619655 ZSCAN30Q86W11 494 aa23.04■■□□□ 1.28
MMP28-207ENST00000619655 EHD4Q9H223 541 aa23.04■■□□□ 1.28
MMP28-207ENST00000619655 PI4KBQ9UBF8 816 aa23.04■■□□□ 1.28
MMP28-207ENST00000619655 ZBTB12Q9Y330 459 aaPredicted RBP23.04■■□□□ 1.28
MMP28-207ENST00000619655 PSMD14O00487 310 aa23.04■■□□□ 1.28
MMP28-207ENST00000619655 MSNP26038 577 aaKnown RBP23.04■■□□□ 1.28
MMP28-207ENST00000619655 PSMD1Q99460 953 aa23.04■■□□□ 1.28
MMP28-207ENST00000619655 CCDC194A0A1B0GVG4 234 aa23.03■■□□□ 1.28
MMP28-207ENST00000619655 IQCB1Q15051 598 aa23.03■■□□□ 1.28
MMP28-207ENST00000619655 HS1BP3Q53T59 392 aa23.03■■□□□ 1.28
MMP28-207ENST00000619655 SIPA1L1O43166 1804 aa23.03■■□□□ 1.28
MMP28-207ENST00000619655 MYO3BQ8WXR4 1341 aa23.03■■□□□ 1.28
MMP28-207ENST00000619655 VWA3AA6NCI4 1184 aa23.03■■□□□ 1.28
MMP28-207ENST00000619655 FOXN1O15353 648 aa23.03■■□□□ 1.28
MMP28-207ENST00000619655 CERKLQ49MI3 558 aaPredicted RBP23.03■■□□□ 1.28
MMP28-207ENST00000619655 METTL16Q86W50 562 aaKnown RBP23.03■■□□□ 1.28
MMP28-207ENST00000619655 SPC24Q8NBT2 197 aa23.03■■□□□ 1.28
MMP28-207ENST00000619655 RSBN1LQ6PCB5 846 aaPredicted RBP23.02■■□□□ 1.28
MMP28-207ENST00000619655 AOPEPQ8N6M6 819 aa23.02■■□□□ 1.28
MMP28-207ENST00000619655 ZNF579Q8NAF0 562 aaKnown RBP23.02■■□□□ 1.28
MMP28-207ENST00000619655 EPSTI1Q96J88 318 aa23.02■■□□□ 1.28
MMP28-207ENST00000619655 NAT10Q9H0A0 1025 aaKnown RBP23.02■■□□□ 1.28
MMP28-207ENST00000619655 PCDHA6Q9UN73 950 aa23.02■■□□□ 1.28
MMP28-207ENST00000619655 PCDHA8Q9Y5H6 950 aa23.02■■□□□ 1.28
MMP28-207ENST00000619655 COL4A5P29400 1685 aa23.02■■□□□ 1.28
MMP28-207ENST00000619655 MYH4Q9Y623 1939 aa23.02■■□□□ 1.28
MMP28-207ENST00000619655 CLRN2A0PK11 232 aa23.02■■□□□ 1.28
MMP28-207ENST00000619655 TRIM5Q9C035 493 aa23.02■■□□□ 1.28
MMP28-207ENST00000619655 BMP15O95972 392 aa23.01■■□□□ 1.27
MMP28-207ENST00000619655 CCDC96Q2M329 555 aa23.01■■□□□ 1.27
MMP28-207ENST00000619655 GRIPAP1Q4V328 841 aa23.01■■□□□ 1.27
MMP28-207ENST00000619655 ASPRV1Q53RT3 343 aa23.01■■□□□ 1.27
MMP28-207ENST00000619655 DHX40Q8IX18 779 aaKnown RBP23.01■■□□□ 1.27
MMP28-207ENST00000619655 SERTAD1Q9UHV2 236 aa23.01■■□□□ 1.27
MMP28-207ENST00000619655 TCP10L2B9ZVM9 353 aa23■■□□□ 1.27
MMP28-207ENST00000619655 GDF11O95390 407 aa23■■□□□ 1.27
MMP28-207ENST00000619655 SMCO2A6NFE2 343 aa23■■□□□ 1.27
MMP28-207ENST00000619655 TRAPPC10P48553 1259 aa23■■□□□ 1.27
MMP28-207ENST00000619655 ATP2C1P98194 919 aaPredicted RBP23■■□□□ 1.27
MMP28-207ENST00000619655 INF2Q27J81 1249 aa23■■□□□ 1.27
MMP28-207ENST00000619655 KCTD1Q719H9 257 aa23■■□□□ 1.27
MMP28-207ENST00000619655 SYMPKQ92797 1274 aaKnown RBP23■■□□□ 1.27
MMP28-207ENST00000619655 CCDC17Q96LX7 622 aa23■■□□□ 1.27
MMP28-207ENST00000619655 M0R2N6 131 aa22.99■■□□□ 1.27
MMP28-207ENST00000619655 CLCN1P35523 988 aa22.99■■□□□ 1.27
MMP28-207ENST00000619655 NLRP12P59046 1061 aa22.99■■□□□ 1.27
MMP28-207ENST00000619655 SOGA3Q5TF21 947 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms