RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 COL5A3P25940 1745 aaPredicted RBP12.16□□□□□ -0.46
UPF3A-212ENST00000619079 SKOR1P84550 965 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 PAPD7Q5XG87 772 aaKnown RBP12.16□□□□□ -0.46
UPF3A-212ENST00000619079 KIF6Q6ZMV9 814 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 DZIP3Q86Y13 1208 aaKnown RBP12.16□□□□□ -0.46
UPF3A-212ENST00000619079 RIN2Q8WYP3 895 aaPredicted RBP12.16□□□□□ -0.46
UPF3A-212ENST00000619079 XAGE2Q96GT9 111 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 JPH2Q9BR39 696 aaPredicted RBP12.16□□□□□ -0.46
UPF3A-212ENST00000619079 PAGR1Q9BTK6 254 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 SPEF2Q9C093 1822 aa12.15□□□□□ -0.46
UPF3A-212ENST00000619079 A0A087WZG4 1122 aa12.15□□□□□ -0.46
UPF3A-212ENST00000619079 FOXN1O15353 648 aa12.15□□□□□ -0.46
UPF3A-212ENST00000619079 PDIA6Q15084 440 aa12.15□□□□□ -0.46
UPF3A-212ENST00000619079 COL23A1Q86Y22 540 aaPredicted RBP12.15□□□□□ -0.46
UPF3A-212ENST00000619079 XAGE3Q8WTP9 111 aa12.15□□□□□ -0.46
UPF3A-212ENST00000619079 GPHNQ9NQX3 736 aaPredicted RBP12.15□□□□□ -0.46
UPF3A-212ENST00000619079 LAMB4A4D0S4 1761 aa12.15□□□□□ -0.46
UPF3A-212ENST00000619079 POLR2DO15514 142 aaKnown RBP12.15□□□□□ -0.47
UPF3A-212ENST00000619079 NF2P35240 595 aa12.15□□□□□ -0.47
UPF3A-212ENST00000619079 FNTAP49354 379 aa12.15□□□□□ -0.47
UPF3A-212ENST00000619079 FXR1P51114 621 aaKnown RBP eCLIP12.15□□□□□ -0.47
UPF3A-212ENST00000619079 ERVK-24P63145 666 aa12.15□□□□□ -0.47
UPF3A-212ENST00000619079 SPAG1Q07617 926 aa12.15□□□□□ -0.47
UPF3A-212ENST00000619079 RABL6Q3YEC7 729 aaPredicted RBP12.15□□□□□ -0.47
UPF3A-212ENST00000619079 COPS6Q7L5N1 327 aa12.15□□□□□ -0.47
UPF3A-212ENST00000619079 ANKRD18AQ8IVF6 992 aa12.15□□□□□ -0.47
UPF3A-212ENST00000619079 MED15Q96RN5 788 aa12.15□□□□□ -0.47
UPF3A-212ENST00000619079 GPR108Q9NPR9 543 aa12.15□□□□□ -0.47
UPF3A-212ENST00000619079 CICQ96RK0 1608 aaPredicted RBP12.14□□□□□ -0.47
UPF3A-212ENST00000619079 PTPREP23469 700 aa12.14□□□□□ -0.47
UPF3A-212ENST00000619079 ELF1P32519 619 aa12.14□□□□□ -0.47
UPF3A-212ENST00000619079 ALS2CLQ60I27 953 aa12.14□□□□□ -0.47
UPF3A-212ENST00000619079 ZNF662Q6ZS27 426 aa12.14□□□□□ -0.47
UPF3A-212ENST00000619079 AENQ8WTP8 325 aaKnown RBP12.14□□□□□ -0.47
UPF3A-212ENST00000619079 RUFY1Q96T51 708 aa12.14□□□□□ -0.47
UPF3A-212ENST00000619079 MMS19Q96T76 1030 aa12.14□□□□□ -0.47
UPF3A-212ENST00000619079 PDGFDQ9GZP0 370 aaPredicted RBP12.14□□□□□ -0.47
UPF3A-212ENST00000619079 ZBTB3Q9H5J0 574 aa12.14□□□□□ -0.47
UPF3A-212ENST00000619079 SERTAD1Q9UHV2 236 aa12.14□□□□□ -0.47
UPF3A-212ENST00000619079 IQSEC3Q9UPP2 1182 aaPredicted RBP12.14□□□□□ -0.47
UPF3A-212ENST00000619079 MYH14Q7Z406 1995 aaKnown RBP12.14□□□□□ -0.47
UPF3A-212ENST00000619079 C4AP0C0L4 1744 aa12.14□□□□□ -0.47
UPF3A-212ENST00000619079 A0A0G2JLW4 131 aa12.13□□□□□ -0.47
UPF3A-212ENST00000619079 ANO9A1A5B4 782 aa12.13□□□□□ -0.47
UPF3A-212ENST00000619079 ERCC3P19447 782 aa12.13□□□□□ -0.47
UPF3A-212ENST00000619079 METAP2P50579 478 aaKnown RBP eCLIP12.13□□□□□ -0.47
UPF3A-212ENST00000619079 PREPLQ4J6C6 727 aaPredicted RBP12.13□□□□□ -0.47
UPF3A-212ENST00000619079 EPHA10Q5JZY3 1008 aa12.13□□□□□ -0.47
UPF3A-212ENST00000619079 CAGE1Q8TC20 777 aa12.13□□□□□ -0.47
UPF3A-212ENST00000619079 NUP88Q99567 741 aaPredicted RBP12.13□□□□□ -0.47
UPF3A-212ENST00000619079 SRP68Q9UHB9 627 aaKnown RBP12.13□□□□□ -0.47
UPF3A-212ENST00000619079 MCM8Q9UJA3 840 aa12.13□□□□□ -0.47
UPF3A-212ENST00000619079 GGA2Q9UJY4 613 aa12.13□□□□□ -0.47
UPF3A-212ENST00000619079 CEP131Q9UPN4 1083 aa12.13□□□□□ -0.47
UPF3A-212ENST00000619079 DDX60Q8IY21 1712 aaKnown RBP12.13□□□□□ -0.47
UPF3A-212ENST00000619079 NDUFA10O95299 355 aa12.13□□□□□ -0.47
UPF3A-212ENST00000619079 ZFYP08048 801 aaPredicted RBP12.13□□□□□ -0.47
UPF3A-212ENST00000619079 DRP2Q13474 957 aa12.13□□□□□ -0.47
UPF3A-212ENST00000619079 SAFBQ15424 915 aaKnown RBP eCLIP12.13□□□□□ -0.47
UPF3A-212ENST00000619079 RILPL1Q5EBL4 403 aa12.13□□□□□ -0.47
UPF3A-212ENST00000619079 TTLL7Q6ZT98 887 aa12.13□□□□□ -0.47
UPF3A-212ENST00000619079 NOSTRINQ8IVI9 506 aa12.13□□□□□ -0.47
UPF3A-212ENST00000619079 WASF1Q92558 559 aa12.13□□□□□ -0.47
UPF3A-212ENST00000619079 SLF1Q9BQI6 1058 aa12.13□□□□□ -0.47
UPF3A-212ENST00000619079 METTL22Q9BUU2 404 aaPredicted RBP12.13□□□□□ -0.47
UPF3A-212ENST00000619079 NBPF3Q9H094 633 aa12.13□□□□□ -0.47
UPF3A-212ENST00000619079 GUCA1BQ9UMX6 200 aa12.13□□□□□ -0.47
UPF3A-212ENST00000619079 EPN1Q9Y6I3 576 aaPredicted RBP12.13□□□□□ -0.47
UPF3A-212ENST00000619079 SMTNP53814 917 aa12.12□□□□□ -0.47
UPF3A-212ENST00000619079 KRT83P78385 493 aa12.12□□□□□ -0.47
UPF3A-212ENST00000619079 ITIH3Q06033 890 aa12.12□□□□□ -0.47
UPF3A-212ENST00000619079 CUL4BQ13620 913 aa12.12□□□□□ -0.47
UPF3A-212ENST00000619079 MSL1Q68DK7 614 aa12.12□□□□□ -0.47
UPF3A-212ENST00000619079 CCDC50Q8IVM0 306 aa12.12□□□□□ -0.47
UPF3A-212ENST00000619079 VEZTQ9HBM0 779 aa12.12□□□□□ -0.47
UPF3A-212ENST00000619079 FBXO2Q9UK22 296 aaPredicted RBP12.12□□□□□ -0.47
UPF3A-212ENST00000619079 ANGEL1Q9UNK9 670 aaKnown RBP12.12□□□□□ -0.47
UPF3A-212ENST00000619079 PPP1R12AO14974 1030 aaPredicted RBP12.12□□□□□ -0.47
UPF3A-212ENST00000619079 ACTN4O43707 911 aaKnown RBP12.12□□□□□ -0.47
UPF3A-212ENST00000619079 ZBTB7AO95365 584 aa12.12□□□□□ -0.47
UPF3A-212ENST00000619079 CDR1P51861 262 aa12.12□□□□□ -0.47
UPF3A-212ENST00000619079 ANTXR2P58335 489 aa12.12□□□□□ -0.47
UPF3A-212ENST00000619079 APBA1Q02410 837 aa12.12□□□□□ -0.47
UPF3A-212ENST00000619079 STK11IPQ8N1F8 1099 aa12.12□□□□□ -0.47
UPF3A-212ENST00000619079 ZKSCAN4Q969J2 545 aaPredicted RBP12.12□□□□□ -0.47
UPF3A-212ENST00000619079 JAKMIP2Q96AA8 810 aa12.12□□□□□ -0.47
UPF3A-212ENST00000619079 GSDMAQ96QA5 445 aa12.12□□□□□ -0.47
UPF3A-212ENST00000619079 LIMA1Q9UHB6 759 aaKnown RBP12.12□□□□□ -0.47
UPF3A-212ENST00000619079 NARFQ9UHQ1 456 aa12.12□□□□□ -0.47
UPF3A-212ENST00000619079 STK36Q9NRP7 1315 aa12.12□□□□□ -0.47
UPF3A-212ENST00000619079 LRRC10BA6NIK2 292 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 M0R2C6 588 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 N4BP3O15049 544 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 KRT86O43790 486 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 CLSTN1O94985 981 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 ABL1P00519 1130 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 IARSP41252 1262 aaKnown RBP12.11□□□□□ -0.47
UPF3A-212ENST00000619079 EMBQ6PCB8 327 aa12.11□□□□□ -0.47
UPF3A-212ENST00000619079 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.11□□□□□ -0.47
UPF3A-212ENST00000619079 ZNF652Q9Y2D9 606 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms