RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 GDF15Q99988 308 aa18.98■□□□□ 0.63
BRCA1-228ENST00000618469 CRISPLD2Q9H0B8 497 aa18.98■□□□□ 0.63
BRCA1-228ENST00000618469 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.98■□□□□ 0.63
BRCA1-228ENST00000618469 GOPCQ9HD26 462 aa18.98■□□□□ 0.63
BRCA1-228ENST00000618469 RBPJLQ9UBG7 517 aa18.98■□□□□ 0.63
BRCA1-228ENST00000618469 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.98■□□□□ 0.63
BRCA1-228ENST00000618469 PLXNB2O15031 1838 aa18.97■□□□□ 0.63
BRCA1-228ENST00000618469 IGKV6D-41A0A0C4DH26 115 aa18.97■□□□□ 0.63
BRCA1-228ENST00000618469 FGAP02671 866 aa18.97■□□□□ 0.63
BRCA1-228ENST00000618469 POTEEQ6S8J3 1075 aa18.97■□□□□ 0.63
BRCA1-228ENST00000618469 CEP95Q96GE4 821 aa18.97■□□□□ 0.63
BRCA1-228ENST00000618469 NYAP2Q9P242 653 aa18.97■□□□□ 0.63
BRCA1-228ENST00000618469 ANAPC4Q9UJX5 808 aa18.97■□□□□ 0.63
BRCA1-228ENST00000618469 CNMDO75829 334 aa18.96■□□□□ 0.63
BRCA1-228ENST00000618469 FLOT1O75955 427 aa18.96■□□□□ 0.63
BRCA1-228ENST00000618469 HAND2P61296 217 aa18.96■□□□□ 0.63
BRCA1-228ENST00000618469 TFAP4Q01664 338 aa18.96■□□□□ 0.63
BRCA1-228ENST00000618469 SAMD1Q6SPF0 538 aaPredicted RBP18.96■□□□□ 0.63
BRCA1-228ENST00000618469 LBX2Q6XYB7 198 aa18.96■□□□□ 0.63
BRCA1-228ENST00000618469 CENPQQ7L2Z9 268 aaPredicted RBP18.96■□□□□ 0.63
BRCA1-228ENST00000618469 TOMM22Q9NS69 142 aa18.96■□□□□ 0.63
BRCA1-228ENST00000618469 RABGAP1Q9Y3P9 1069 aa18.96■□□□□ 0.63
BRCA1-228ENST00000618469 COL11A1P12107 1806 aaPredicted RBP18.95■□□□□ 0.62
BRCA1-228ENST00000618469 TSPY2A6NKD2 308 aa18.95■□□□□ 0.62
BRCA1-228ENST00000618469 MAGEA10P43363 369 aaPredicted RBP18.95■□□□□ 0.62
BRCA1-228ENST00000618469 MNX1P50219 401 aaPredicted RBP18.95■□□□□ 0.62
BRCA1-228ENST00000618469 IRF5Q13568 498 aa18.95■□□□□ 0.62
BRCA1-228ENST00000618469 CCAR1Q8IX12 1150 aaKnown RBP18.95■□□□□ 0.62
BRCA1-228ENST00000618469 LRRC47Q8N1G4 583 aaKnown RBP18.95■□□□□ 0.62
BRCA1-228ENST00000618469 NEDD1Q8NHV4 660 aa18.95■□□□□ 0.62
BRCA1-228ENST00000618469 PORCNQ9H237 461 aa18.95■□□□□ 0.62
BRCA1-228ENST00000618469 CWC22Q9HCG8 908 aaKnown RBP18.95■□□□□ 0.62
BRCA1-228ENST00000618469 INCENPQ9NQS7 918 aa18.95■□□□□ 0.62
BRCA1-228ENST00000618469 MTMR4Q9NYA4 1195 aa18.95■□□□□ 0.62
BRCA1-228ENST00000618469 CLIP2Q9UDT6 1046 aa18.95■□□□□ 0.62
BRCA1-228ENST00000618469 TACC3Q9Y6A5 838 aa18.95■□□□□ 0.62
BRCA1-228ENST00000618469 CUL9Q8IWT3 2517 aa18.95■□□□□ 0.62
BRCA1-228ENST00000618469 RANBP6O60518 1105 aaKnown RBP18.94■□□□□ 0.62
BRCA1-228ENST00000618469 TTLL1O95922 423 aa18.94■□□□□ 0.62
BRCA1-228ENST00000618469 MAPK4P31152 587 aa18.94■□□□□ 0.62
BRCA1-228ENST00000618469 CCNA1P78396 465 aa18.94■□□□□ 0.62
BRCA1-228ENST00000618469 COG2Q14746 738 aa18.94■□□□□ 0.62
BRCA1-228ENST00000618469 Q3C1V9 767 aa18.94■□□□□ 0.62
BRCA1-228ENST00000618469 FAM83BQ5T0W9 1011 aa18.94■□□□□ 0.62
BRCA1-228ENST00000618469 IL25Q9H293 177 aa18.94■□□□□ 0.62
BRCA1-228ENST00000618469 BTBD7Q9P203 1132 aa18.94■□□□□ 0.62
BRCA1-228ENST00000618469 RAD50Q92878 1312 aa18.94■□□□□ 0.62
BRCA1-228ENST00000618469 ORC4O43929 436 aa18.93■□□□□ 0.62
BRCA1-228ENST00000618469 NDUFB10O96000 172 aa18.93■□□□□ 0.62
BRCA1-228ENST00000618469 NEFLP07196 543 aa18.93■□□□□ 0.62
BRCA1-228ENST00000618469 RRP12Q5JTH9 1297 aaKnown RBP18.93■□□□□ 0.62
BRCA1-228ENST00000618469 WDR78Q5VTH9 848 aa18.93■□□□□ 0.62
BRCA1-228ENST00000618469 TBC1D10CQ8IV04 446 aa18.93■□□□□ 0.62
BRCA1-228ENST00000618469 ATG4CQ96DT6 458 aa18.93■□□□□ 0.62
BRCA1-228ENST00000618469 NUP88Q99567 741 aaPredicted RBP18.93■□□□□ 0.62
BRCA1-228ENST00000618469 MTMR10Q9NXD2 777 aa18.93■□□□□ 0.62
BRCA1-228ENST00000618469 DSG3P32926 999 aa18.92■□□□□ 0.62
BRCA1-228ENST00000618469 BMP8BP34820 402 aa18.92■□□□□ 0.62
BRCA1-228ENST00000618469 GPR142Q7Z601 462 aa18.92■□□□□ 0.62
BRCA1-228ENST00000618469 SKAP1Q86WV1 359 aa18.92■□□□□ 0.62
BRCA1-228ENST00000618469 SOCS4Q8WXH5 440 aa18.92■□□□□ 0.62
BRCA1-228ENST00000618469 NBPF3Q9H094 633 aa18.92■□□□□ 0.62
BRCA1-228ENST00000618469 FBXO28Q9NVF7 368 aa18.92■□□□□ 0.62
BRCA1-228ENST00000618469 HOXC10Q9NYD6 342 aa18.92■□□□□ 0.62
BRCA1-228ENST00000618469 F5H6K3 240 aa18.91■□□□□ 0.62
BRCA1-228ENST00000618469 NMT2O60551 498 aa18.91■□□□□ 0.62
BRCA1-228ENST00000618469 KLRC3Q07444 240 aa18.91■□□□□ 0.62
BRCA1-228ENST00000618469 DSCC1Q9BVC3 393 aa18.91■□□□□ 0.62
BRCA1-228ENST00000618469 UBE2OQ9C0C9 1292 aaKnown RBP18.91■□□□□ 0.62
BRCA1-228ENST00000618469 C11orf49Q9H6J7 331 aa18.91■□□□□ 0.62
BRCA1-228ENST00000618469 STX8Q9UNK0 236 aa18.91■□□□□ 0.62
BRCA1-228ENST00000618469 ZNF236Q9UL36 1845 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 HMGCRP04035 888 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 FGRP09769 529 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 CHMLP26374 656 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 PLS1Q14651 629 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 PPP4R3BQ5MIZ7 849 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 AKNAD1Q5T1N1 836 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 PLEKHH3Q7Z736 793 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 TDHQ8IZJ6 230 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 MB21D1Q8N884 522 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 STAG1Q8WVM7 1258 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 RUFY2Q8WXA3 655 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 CCDC136Q96JN2 1154 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 NUDT12Q9BQG2 462 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 COL25A1Q9BXS0 654 aaPredicted RBP18.9■□□□□ 0.62
BRCA1-228ENST00000618469 SPATC1LQ9H0A9 340 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 HMX1Q9NP08 348 aaPredicted RBP18.9■□□□□ 0.62
BRCA1-228ENST00000618469 GJD2Q9UKL4 321 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 PPP1R9AQ9ULJ8 1098 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 ISY1Q9ULR0 285 aaKnown RBP18.9■□□□□ 0.62
BRCA1-228ENST00000618469 SYNPO2Q9UMS6 1093 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 STXBP5LQ9Y2K9 1186 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 NEDD4P46934 1319 aa18.9■□□□□ 0.62
BRCA1-228ENST00000618469 ZNF213O14771 459 aa18.89■□□□□ 0.61
BRCA1-228ENST00000618469 CYP2B6P20813 491 aa18.89■□□□□ 0.61
BRCA1-228ENST00000618469 MFSD6Q6ZSS7 791 aa18.89■□□□□ 0.61
BRCA1-228ENST00000618469 GMCL1P1Q8NEA9 526 aa18.89■□□□□ 0.61
BRCA1-228ENST00000618469 MKL1Q969V6 931 aa18.89■□□□□ 0.61
BRCA1-228ENST00000618469 FAM161BQ96MY7 647 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms