RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 KIF2AO00139 706 aaPredicted RBP16.4■□□□□ 0.22
SHROOM1-208ENST00000617339 NRDCO43847 1150 aa16.4■□□□□ 0.22
SHROOM1-208ENST00000617339 INF2Q27J81 1249 aa16.4■□□□□ 0.22
SHROOM1-208ENST00000617339 RILPL1Q5EBL4 403 aa16.4■□□□□ 0.22
SHROOM1-208ENST00000617339 SLC10A5Q5PT55 438 aa16.4■□□□□ 0.22
SHROOM1-208ENST00000617339 RASSF4Q9H2L5 321 aa16.4■□□□□ 0.22
SHROOM1-208ENST00000617339 SPTY2D1Q68D10 685 aaPredicted RBP16.4■□□□□ 0.22
SHROOM1-208ENST00000617339 IL17RBQ9NRM6 502 aa16.4■□□□□ 0.22
SHROOM1-208ENST00000617339 ABCA3Q99758 1704 aa16.4■□□□□ 0.22
SHROOM1-208ENST00000617339 XDHP47989 1333 aa16.39■□□□□ 0.22
SHROOM1-208ENST00000617339 GSDMDP57764 484 aa16.39■□□□□ 0.21
SHROOM1-208ENST00000617339 LAMA4Q16363 1823 aa16.39■□□□□ 0.21
SHROOM1-208ENST00000617339 DDR1Q08345 913 aa16.39■□□□□ 0.21
SHROOM1-208ENST00000617339 JAKMIP3Q5VZ66 844 aa16.39■□□□□ 0.21
SHROOM1-208ENST00000617339 TXLNBQ8N3L3 684 aa16.39■□□□□ 0.21
SHROOM1-208ENST00000617339 WDR66Q8TBY9 1149 aa16.39■□□□□ 0.21
SHROOM1-208ENST00000617339 SAMSN1Q9NSI8 373 aaKnown RBP16.39■□□□□ 0.21
SHROOM1-208ENST00000617339 CUTAO60888 179 aa16.39■□□□□ 0.21
SHROOM1-208ENST00000617339 GPS2Q13227 327 aa16.39■□□□□ 0.21
SHROOM1-208ENST00000617339 POSTNQ15063 836 aa16.39■□□□□ 0.21
SHROOM1-208ENST00000617339 CCDC96Q2M329 555 aa16.39■□□□□ 0.21
SHROOM1-208ENST00000617339 TTC38Q5R3I4 469 aa16.39■□□□□ 0.21
SHROOM1-208ENST00000617339 BRIP1Q9BX63 1249 aa16.39■□□□□ 0.21
SHROOM1-208ENST00000617339 COL16A1Q07092 1604 aaPredicted RBP16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 NHSL1Q5SYE7 1610 aa16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 PHLPP1O60346 1717 aa16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 LDHCP07864 332 aa16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 EYA3Q99504 573 aa16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 TTF2Q9UNY4 1162 aaKnown RBP16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 A0A087X0B3 334 aa16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 CCDC194A0A1B0GVG4 234 aa16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 ANKRD65E5RJM6 399 aa16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 SASH3O75995 380 aa16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 SMC1AQ14683 1233 aaKnown RBP16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 LETM2Q2VYF4 491 aa16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 TRMT1LQ7Z2T5 733 aaKnown RBP16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 FBXL16Q8N461 479 aa16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 NFE2L3Q9Y4A8 694 aa16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 NWD2Q9ULI1 1742 aa16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 SLC16A2P36021 539 aa16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 ADKP55263 362 aaKnown RBP16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 ATP8A2Q9NTI2 1148 aa16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 RTL9Q8NET4 1388 aa16.38■□□□□ 0.21
SHROOM1-208ENST00000617339 SCG2P13521 617 aa16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 RC3H1Q5TC82 1133 aaKnown RBP16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 RESP18Q5W5W9 173 aa16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 TMTC3Q6ZXV5 915 aa16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 TSPYL1Q9H0U9 437 aa16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 L2HGDHQ9H9P8 463 aa16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 FBXO2Q9UK22 296 aaPredicted RBP16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 BAZ2AQ9UIF9 1905 aaKnown RBP16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 MYO1CO00159 1063 aa16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 BMP6P22004 513 aa16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 FMR1Q06787 632 aaKnown RBP eCLIP16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 KARSQ15046 597 aaKnown RBP16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 GJA10Q969M2 543 aa16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 VEZTQ9HBM0 779 aa16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 BIN2Q9UBW5 565 aaPredicted RBP16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 CAVIN2O95810 425 aa16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 SNAP25P60880 206 aa16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 TYW1BQ6NUM6 668 aa16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 RNF26Q9BY78 433 aaPredicted RBP16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 STK32BQ9NY57 414 aa16.37■□□□□ 0.21
SHROOM1-208ENST00000617339 KLRF2D3W0D1 207 aa16.36■□□□□ 0.21
SHROOM1-208ENST00000617339 CCT6AP40227 531 aaKnown RBP16.36■□□□□ 0.21
SHROOM1-208ENST00000617339 NAPAP54920 295 aa16.36■□□□□ 0.21
SHROOM1-208ENST00000617339 C12orf60Q5U649 245 aa16.36■□□□□ 0.21
SHROOM1-208ENST00000617339 ATF5Q9Y2D1 282 aaPredicted RBP16.36■□□□□ 0.21
SHROOM1-208ENST00000617339 WDR19Q8NEZ3 1342 aa16.36■□□□□ 0.21
SHROOM1-208ENST00000617339 ETF1P62495 437 aaKnown RBP16.36■□□□□ 0.21
SHROOM1-208ENST00000617339 SHROOM1Q2M3G4 852 aaPredicted RBP16.36■□□□□ 0.21
SHROOM1-208ENST00000617339 DEFB132Q7Z7B7 95 aa16.36■□□□□ 0.21
SHROOM1-208ENST00000617339 TBC1D16Q8TBP0 767 aa16.36■□□□□ 0.21
SHROOM1-208ENST00000617339 COA7Q96BR5 231 aa16.36■□□□□ 0.21
SHROOM1-208ENST00000617339 TMEM47Q9BQJ4 181 aa16.36■□□□□ 0.21
SHROOM1-208ENST00000617339 ARPP21Q9UBL0 812 aaPredicted RBP16.36■□□□□ 0.21
SHROOM1-208ENST00000617339 MAN1B1Q9UKM7 699 aa16.36■□□□□ 0.21
SHROOM1-208ENST00000617339 PPP6R2O75170 966 aa16.36■□□□□ 0.21
SHROOM1-208ENST00000617339 RCSD1Q6JBY9 416 aa16.36■□□□□ 0.21
SHROOM1-208ENST00000617339 FOXP1Q9H334 677 aaPredicted RBP16.36■□□□□ 0.21
SHROOM1-208ENST00000617339 PTPREP23469 700 aa16.35■□□□□ 0.21
SHROOM1-208ENST00000617339 CDK8P49336 464 aa16.35■□□□□ 0.21
SHROOM1-208ENST00000617339 MYL5Q02045 173 aa16.35■□□□□ 0.21
SHROOM1-208ENST00000617339 C2CD5Q86YS7 1000 aa16.35■□□□□ 0.21
SHROOM1-208ENST00000617339 MYH2Q9UKX2 1941 aa16.35■□□□□ 0.21
SHROOM1-208ENST00000617339 SPEF2Q9C093 1822 aa16.35■□□□□ 0.21
SHROOM1-208ENST00000617339 SLC20A2Q08357 652 aa16.35■□□□□ 0.21
SHROOM1-208ENST00000617339 H0YIN7 160 aa16.34■□□□□ 0.21
SHROOM1-208ENST00000617339 ZRANB2O95218 330 aaKnown RBP eCLIP16.34■□□□□ 0.21
SHROOM1-208ENST00000617339 TOP1P11387 765 aaKnown RBP16.34■□□□□ 0.21
SHROOM1-208ENST00000617339 CHRNA5P30532 468 aa16.34■□□□□ 0.21
SHROOM1-208ENST00000617339 KIF5BP33176 963 aa16.34■□□□□ 0.21
SHROOM1-208ENST00000617339 CCDC93Q567U6 631 aa16.34■□□□□ 0.21
SHROOM1-208ENST00000617339 CEP95Q96GE4 821 aa16.34■□□□□ 0.21
SHROOM1-208ENST00000617339 HOOK1Q9UJC3 728 aaKnown RBP16.34■□□□□ 0.21
SHROOM1-208ENST00000617339 SPATA31A6Q5VVP1 1343 aa16.34■□□□□ 0.21
SHROOM1-208ENST00000617339 MCM6Q14566 821 aa16.34■□□□□ 0.21
SHROOM1-208ENST00000617339 CCDC150Q8NCX0 1101 aa16.34■□□□□ 0.21
SHROOM1-208ENST00000617339 CEP131Q9UPN4 1083 aa16.34■□□□□ 0.21
SHROOM1-208ENST00000617339 FAM205AQ6ZU69 1335 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms