RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ANKRD13CQ8N6S4 541 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 PI4K2BQ8TCG2 481 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.53■□□□□ 0.082e-6■■□□□ 11.9
CPSF1-212ENST00000616140 TSKSQ9UJT2 592 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 EPN1Q9Y6I3 576 aaPredicted RBP15.53■□□□□ 0.08
CPSF1-212ENST00000616140 A6NNZ2 444 aa15.52■□□□□ 0.08
CPSF1-212ENST00000616140 MYCLP12524 364 aaPredicted RBP15.52■□□□□ 0.08
CPSF1-212ENST00000616140 MAP3K9P80192 1104 aa15.52■□□□□ 0.08
CPSF1-212ENST00000616140 ZSCAN26Q16670 478 aa15.52■□□□□ 0.08
CPSF1-212ENST00000616140 TUBB8Q3ZCM7 444 aa15.52■□□□□ 0.08
CPSF1-212ENST00000616140 ZNF354CQ86Y25 554 aa15.52■□□□□ 0.08
CPSF1-212ENST00000616140 OSBP2Q969R2 916 aa15.52■□□□□ 0.08
CPSF1-212ENST00000616140 CSRNP2Q9H175 543 aa15.52■□□□□ 0.08
CPSF1-212ENST00000616140 MAP3K15Q6ZN16 1313 aa15.52■□□□□ 0.08
CPSF1-212ENST00000616140 OR52Z1P0C646 297 aa15.52■□□□□ 0.07
CPSF1-212ENST00000616140 IRX5P78411 483 aaPredicted RBP15.52■□□□□ 0.07
CPSF1-212ENST00000616140 MED23Q9ULK4 1368 aa15.52■□□□□ 0.07
CPSF1-212ENST00000616140 PLA2R1Q13018 1463 aa15.52■□□□□ 0.07
CPSF1-212ENST00000616140 NCBP1Q09161 790 aaKnown RBP15.52■□□□□ 0.07
CPSF1-212ENST00000616140 INTS8Q75QN2 995 aaKnown RBP15.52■□□□□ 0.07
CPSF1-212ENST00000616140 ALDH3A1P30838 453 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 NEK8Q86SG6 692 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 SLC39A2Q9NP94 309 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 XRCC5P13010 732 aaKnown RBP15.51■□□□□ 0.07
CPSF1-212ENST00000616140 ARL1P40616 181 aaPredicted RBP15.51■□□□□ 0.07
CPSF1-212ENST00000616140 KIF23Q02241 960 aaPredicted RBP15.51■□□□□ 0.07
CPSF1-212ENST00000616140 GOLGA8FQ08AF8 430 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 GOLGA8DPQ0D2H9 430 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 ATP8A2Q9NTI2 1148 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 AGTPBP1Q9UPW5 1226 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 COBLO75128 1261 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 CASP14P31944 242 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 STAT1P42224 750 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 PTPROQ16827 1216 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 GPBP1Q86WP2 473 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 TPH2Q8IWU9 490 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 CCDC105Q8IYK2 499 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 IFT74Q96LB3 600 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 HINFPQ9BQA5 517 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 STIM2Q9P246 746 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 ARMCX3Q9UH62 379 aaPredicted RBP15.51■□□□□ 0.07
CPSF1-212ENST00000616140 ZBTB1Q9Y2K1 713 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 CIAO1O76071 339 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 ECM2O94769 699 aaPredicted RBP15.51■□□□□ 0.07
CPSF1-212ENST00000616140 RPN1P04843 607 aaKnown RBP15.51■□□□□ 0.07
CPSF1-212ENST00000616140 ABCB4P21439 1286 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 GSDMAQ96QA5 445 aa15.51■□□□□ 0.07
CPSF1-212ENST00000616140 BCRP11274 1271 aa15.5■□□□□ 0.07
CPSF1-212ENST00000616140 NR5A1Q13285 461 aa15.5■□□□□ 0.07
CPSF1-212ENST00000616140 GBP6Q6ZN66 633 aa15.5■□□□□ 0.07
CPSF1-212ENST00000616140 IQCDQ96DY2 449 aa15.5■□□□□ 0.07
CPSF1-212ENST00000616140 LSM14BQ9BX40 385 aaKnown RBP15.5■□□□□ 0.07
CPSF1-212ENST00000616140 PBRM1Q86U86 1689 aa15.5■□□□□ 0.07
CPSF1-212ENST00000616140 GUCY2FP51841 1108 aa15.5■□□□□ 0.07
CPSF1-212ENST00000616140 TTC37Q6PGP7 1564 aa15.5■□□□□ 0.07
CPSF1-212ENST00000616140 SMYD4Q8IYR2 804 aaPredicted RBP15.5■□□□□ 0.07
CPSF1-212ENST00000616140 ATP7BP35670 1465 aa15.5■□□□□ 0.07
CPSF1-212ENST00000616140 USP6P35125 1406 aa15.5■□□□□ 0.07
CPSF1-212ENST00000616140 ATP5DP30049 168 aa15.5■□□□□ 0.07
CPSF1-212ENST00000616140 USP40Q9NVE5 1235 aa15.5■□□□□ 0.07
CPSF1-212ENST00000616140 M0R2C6 588 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 PPP6R2O75170 966 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 LACTBP83111 547 aaPredicted RBP15.49■□□□□ 0.07
CPSF1-212ENST00000616140 POLA2Q14181 598 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 SYCE1Q8N0S2 351 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 LRRC47Q8N1G4 583 aaKnown RBP15.49■□□□□ 0.07
CPSF1-212ENST00000616140 PPP1R13BQ96KQ4 1090 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 RNF26Q9BY78 433 aaPredicted RBP15.49■□□□□ 0.07
CPSF1-212ENST00000616140 PUS7LQ9H0K6 701 aaKnown RBP15.49■□□□□ 0.07
CPSF1-212ENST00000616140 EXOC7Q9UPT5 735 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 FAM169AQ9Y6X4 670 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 ROBO2Q9HCK4 1378 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 AIFM3Q96NN9 605 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 MAK16Q9BXY0 300 aaKnown RBP15.49■□□□□ 0.07
CPSF1-212ENST00000616140 TRIM7Q9C029 511 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 FOXP1Q9H334 677 aaPredicted RBP15.49■□□□□ 0.07
CPSF1-212ENST00000616140 PSTPIP2Q9H939 334 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 MYO1AQ9UBC5 1043 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 KCNK3O14649 394 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 IKBKBO14920 756 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 BUB1O43683 1085 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 COPB1P53618 953 aaKnown RBP15.49■□□□□ 0.07
CPSF1-212ENST00000616140 U2AF1L4Q8WU68 220 aaKnown RBP15.49■□□□□ 0.07
CPSF1-212ENST00000616140 PPM1EQ8WY54 764 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 USTQ9Y2C2 406 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 FRMPD2Q68DX3 1309 aaPredicted RBP15.49■□□□□ 0.07
CPSF1-212ENST00000616140 LIN9Q5TKA1 542 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 GRAMD1CQ8IYS0 662 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 GPHNQ9NQX3 736 aaPredicted RBP15.49■□□□□ 0.07
CPSF1-212ENST00000616140 HYOU1Q9Y4L1 999 aa15.49■□□□□ 0.07
CPSF1-212ENST00000616140 NEO1Q92859 1461 aa15.48■□□□□ 0.07
CPSF1-212ENST00000616140 TCP1P17987 556 aaKnown RBP15.48■□□□□ 0.07
CPSF1-212ENST00000616140 PRR16Q569H4 304 aa15.48■□□□□ 0.07
CPSF1-212ENST00000616140 FAM26FQ5R3K3 315 aa15.48■□□□□ 0.07
CPSF1-212ENST00000616140 PNMA8AQ86V59 439 aaPredicted RBP15.48■□□□□ 0.07
CPSF1-212ENST00000616140 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.48■□□□□ 0.074e-6■■■■■ 36.3
CPSF1-212ENST00000616140 SWAP70Q9UH65 585 aa15.48■□□□□ 0.07
CPSF1-212ENST00000616140 CLASP1Q7Z460 1538 aa15.48■□□□□ 0.07
CPSF1-212ENST00000616140 RESTQ13127 1097 aa15.48■□□□□ 0.07
CPSF1-212ENST00000616140 DCUN1D2Q6PH85 259 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms