RNA–Protein interactions for RNA: ENST00000600970.5

USE1-208, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 5

Gene USE1, Length 826 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-208ENST00000600970 VCPKMTQ9H867 229 aa20.29■□□□□ 0.84
USE1-208ENST00000600970 NRBP1Q9UHY1 535 aa20.29■□□□□ 0.84
USE1-208ENST00000600970 BAZ2AQ9UIF9 1905 aaKnown RBP20.29■□□□□ 0.84
USE1-208ENST00000600970 CCER2I3L3R5 266 aa20.28■□□□□ 0.84
USE1-208ENST00000600970 WDR46O15213 610 aaKnown RBP20.28■□□□□ 0.84
USE1-208ENST00000600970 PGK1P00558 417 aa20.28■□□□□ 0.84
USE1-208ENST00000600970 CLTBP09497 229 aa20.28■□□□□ 0.84
USE1-208ENST00000600970 RARBP10826 455 aa20.28■□□□□ 0.84
USE1-208ENST00000600970 ICA1Q05084 483 aa20.28■□□□□ 0.84
USE1-208ENST00000600970 RNPC3Q96LT9 517 aaKnown RBP20.28■□□□□ 0.84
USE1-208ENST00000600970 SH2D4AQ9H788 454 aa20.28■□□□□ 0.84
USE1-208ENST00000600970 IL1RAPL2Q9NP60 686 aa20.28■□□□□ 0.84
USE1-208ENST00000600970 RNF180Q86T96 592 aa20.27■□□□□ 0.84
USE1-208ENST00000600970 MMP19Q99542 508 aa20.27■□□□□ 0.84
USE1-208ENST00000600970 ADAMTS5Q9UNA0 930 aa20.27■□□□□ 0.84
USE1-208ENST00000600970 TMEM265A0A087WTH1 108 aa20.26■□□□□ 0.83
USE1-208ENST00000600970 A0A1W2PQ45 241 aaPredicted RBP20.26■□□□□ 0.83
USE1-208ENST00000600970 A0A1W2PQY0 241 aa20.26■□□□□ 0.83
USE1-208ENST00000600970 GOLIM4O00461 696 aa20.26■□□□□ 0.83
USE1-208ENST00000600970 KIAA0355O15063 1070 aa20.26■□□□□ 0.83
USE1-208ENST00000600970 PGK2P07205 417 aa20.26■□□□□ 0.83
USE1-208ENST00000600970 TAL1P17542 331 aaPredicted RBP20.26■□□□□ 0.83
USE1-208ENST00000600970 RIOX2Q8IUF8 465 aa20.26■□□□□ 0.83
USE1-208ENST00000600970 DNAJC2Q99543 621 aaKnown RBP20.26■□□□□ 0.83
USE1-208ENST00000600970 TINF2Q9BSI4 451 aa20.26■□□□□ 0.83
USE1-208ENST00000600970 ARMT1Q9H993 441 aa20.26■□□□□ 0.83
USE1-208ENST00000600970 DIS3Q9Y2L1 958 aaKnown RBP20.26■□□□□ 0.83
USE1-208ENST00000600970 ROBO3Q96MS0 1386 aa20.25■□□□□ 0.83
USE1-208ENST00000600970 SMIM22K7EJ46 135 aa20.25■□□□□ 0.83
USE1-208ENST00000600970 ZNF865P0CJ78 1059 aaPredicted RBP20.25■□□□□ 0.83
USE1-208ENST00000600970 RAG1P15918 1043 aa20.25■□□□□ 0.83
USE1-208ENST00000600970 ZNF792Q3KQV3 632 aa20.25■□□□□ 0.83
USE1-208ENST00000600970 RHPN1Q8TCX5 695 aa20.25■□□□□ 0.83
USE1-208ENST00000600970 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.25■□□□□ 0.83
USE1-208ENST00000600970 PRDM6Q9NQX0 595 aa20.25■□□□□ 0.83
USE1-208ENST00000600970 FBXO28Q9NVF7 368 aa20.25■□□□□ 0.83
USE1-208ENST00000600970 PRKAB2O43741 272 aa20.24■□□□□ 0.83
USE1-208ENST00000600970 PQBP1O60828 265 aaKnown RBP20.24■□□□□ 0.83
USE1-208ENST00000600970 CCDC17Q96LX7 622 aa20.24■□□□□ 0.83
USE1-208ENST00000600970 ATP8A2Q9NTI2 1148 aa20.24■□□□□ 0.83
USE1-208ENST00000600970 ADAMTS4O75173 837 aa20.23■□□□□ 0.83
USE1-208ENST00000600970 EEF2P13639 858 aaKnown RBP20.23■□□□□ 0.83
USE1-208ENST00000600970 AKR1A1P14550 325 aa20.23■□□□□ 0.83
USE1-208ENST00000600970 STAT3P40763 770 aa20.23■□□□□ 0.83
USE1-208ENST00000600970 CDK8P49336 464 aa20.23■□□□□ 0.83
USE1-208ENST00000600970 FPGSQ05932 587 aa20.23■□□□□ 0.83
USE1-208ENST00000600970 KCTD2Q14681 263 aa20.23■□□□□ 0.83
USE1-208ENST00000600970 SLFNL1Q499Z3 407 aa20.23■□□□□ 0.83
USE1-208ENST00000600970 HSP90AB4PQ58FF6 505 aa20.23■□□□□ 0.83
USE1-208ENST00000600970 SYMPKQ92797 1274 aaKnown RBP20.23■□□□□ 0.83
USE1-208ENST00000600970 LENG1Q96BZ8 264 aaPredicted RBP20.23■□□□□ 0.83
USE1-208ENST00000600970 TMEM39AQ9NV64 488 aa20.23■□□□□ 0.83
USE1-208ENST00000600970 ZNF214Q9UL59 606 aaPredicted RBP20.23■□□□□ 0.83
USE1-208ENST00000600970 CYP2D7A0A087X1C5 515 aa20.22■□□□□ 0.83
USE1-208ENST00000600970 VWA5AO00534 786 aa20.22■□□□□ 0.83
USE1-208ENST00000600970 FAAP100Q0VG06 881 aa20.22■□□□□ 0.83
USE1-208ENST00000600970 GRIN2CQ14957 1233 aa20.22■□□□□ 0.83
USE1-208ENST00000600970 C12orf60Q5U649 245 aa20.22■□□□□ 0.83
USE1-208ENST00000600970 ANKRD33Q7Z3H0 272 aa20.22■□□□□ 0.83
USE1-208ENST00000600970 REPS2Q8NFH8 660 aa20.22■□□□□ 0.83
USE1-208ENST00000600970 TSEN34Q9BSV6 310 aaKnown RBP20.22■□□□□ 0.83
USE1-208ENST00000600970 PPP1R9AQ9ULJ8 1098 aa20.22■□□□□ 0.83
USE1-208ENST00000600970 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.21■□□□□ 0.83
USE1-208ENST00000600970 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.21■□□□□ 0.83
USE1-208ENST00000600970 MBD4O95243 580 aa20.21■□□□□ 0.83
USE1-208ENST00000600970 DNAJB2P25686 324 aa20.21■□□□□ 0.83
USE1-208ENST00000600970 ADD2P35612 726 aa20.21■□□□□ 0.83
USE1-208ENST00000600970 C16orf86Q6ZW13 317 aa20.21■□□□□ 0.83
USE1-208ENST00000600970 CLASRPQ8N2M8 674 aaKnown RBP20.21■□□□□ 0.83
USE1-208ENST00000600970 TOX2Q96NM4 488 aa20.21■□□□□ 0.83
USE1-208ENST00000600970 USP17L12C9JPN9 530 aa20.2■□□□□ 0.82
USE1-208ENST00000600970 USP17L21D6R901 530 aa20.2■□□□□ 0.82
USE1-208ENST00000600970 COPB2P35606 906 aa20.2■□□□□ 0.82
USE1-208ENST00000600970 ACLYP53396 1101 aa20.2■□□□□ 0.82
USE1-208ENST00000600970 USP38Q8NB14 1042 aa20.2■□□□□ 0.82
USE1-208ENST00000600970 KANSL2Q9H9L4 492 aa20.2■□□□□ 0.82
USE1-208ENST00000600970 STARD7Q9NQZ5 370 aa20.2■□□□□ 0.82
USE1-208ENST00000600970 CNPY2Q9Y2B0 182 aa20.2■□□□□ 0.82
USE1-208ENST00000600970 SYNRGQ9UMZ2 1314 aa20.2■□□□□ 0.82
USE1-208ENST00000600970 MYH7P12883 1935 aa20.19■□□□□ 0.82
USE1-208ENST00000600970 DCDC2CA8MYV0 355 aa20.19■□□□□ 0.82
USE1-208ENST00000600970 APBB1O00213 710 aa20.19■□□□□ 0.82
USE1-208ENST00000600970 IFIT2P09913 472 aaKnown RBP20.19■□□□□ 0.82
USE1-208ENST00000600970 FAM83BQ5T0W9 1011 aa20.19■□□□□ 0.82
USE1-208ENST00000600970 AMOTL1Q8IY63 956 aa20.19■□□□□ 0.82
USE1-208ENST00000600970 KLHDC9Q8NEP7 349 aa20.19■□□□□ 0.82
USE1-208ENST00000600970 NUP133Q8WUM0 1156 aa20.19■□□□□ 0.82
USE1-208ENST00000600970 KIF1BPQ96EK5 621 aa20.19■□□□□ 0.82
USE1-208ENST00000600970 GOPCQ9HD26 462 aa20.19■□□□□ 0.82
USE1-208ENST00000600970 PAG1Q9NWQ8 432 aa20.19■□□□□ 0.82
USE1-208ENST00000600970 GREB1LQ9C091 1923 aaPredicted RBP20.18■□□□□ 0.82
USE1-208ENST00000600970 MOXD2PA6NHM9 499 aa20.18■□□□□ 0.82
USE1-208ENST00000600970 RAD21O60216 631 aa20.18■□□□□ 0.82
USE1-208ENST00000600970 TIMP1P01033 207 aa20.18■□□□□ 0.82
USE1-208ENST00000600970 CHGBP05060 677 aa20.18■□□□□ 0.82
USE1-208ENST00000600970 KCNA10Q16322 511 aa20.18■□□□□ 0.82
USE1-208ENST00000600970 CCSAPQ6IQ19 270 aaPredicted RBP20.18■□□□□ 0.82
USE1-208ENST00000600970 MSL3Q8N5Y2 521 aaKnown RBP20.18■□□□□ 0.82
USE1-208ENST00000600970 ZNF576Q9H609 170 aa20.18■□□□□ 0.82
USE1-208ENST00000600970 FAM184BQ9ULE4 1060 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms