RNA–Protein interactions for RNA: ENST00000600879.5

HIF3A-219, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-219ENST00000600879 HOXC10Q9NYD6 342 aa12.11□□□□□ -0.47
HIF3A-219ENST00000600879 DBNLQ9UJU6 430 aaKnown RBP12.11□□□□□ -0.47
HIF3A-219ENST00000600879 SURF6O75683 361 aaKnown RBP12.1□□□□□ -0.47
HIF3A-219ENST00000600879 BCAR3O75815 825 aa12.1□□□□□ -0.47
HIF3A-219ENST00000600879 FLOT1O75955 427 aa12.1□□□□□ -0.47
HIF3A-219ENST00000600879 CSF2RAP15509 400 aa12.1□□□□□ -0.47
HIF3A-219ENST00000600879 DSG3P32926 999 aa12.1□□□□□ -0.47
HIF3A-219ENST00000600879 TMEM240Q5SV17 173 aa12.1□□□□□ -0.47
HIF3A-219ENST00000600879 RNF180Q86T96 592 aa12.1□□□□□ -0.47
HIF3A-219ENST00000600879 TRMT2AQ8IZ69 625 aaKnown RBP12.1□□□□□ -0.47
HIF3A-219ENST00000600879 FRAT1Q92837 279 aaPredicted RBP12.1□□□□□ -0.47
HIF3A-219ENST00000600879 MROH8Q9H579 483 aa12.1□□□□□ -0.47
HIF3A-219ENST00000600879 EPHX3Q9H6B9 360 aa12.1□□□□□ -0.47
HIF3A-219ENST00000600879 C1orf115Q9H7X2 142 aa12.1□□□□□ -0.47
HIF3A-219ENST00000600879 GPR108Q9NPR9 543 aa12.1□□□□□ -0.47
HIF3A-219ENST00000600879 CXXC1Q9P0U4 656 aaPredicted RBP12.1□□□□□ -0.47
HIF3A-219ENST00000600879 YBX2Q9Y2T7 364 aaKnown RBP12.1□□□□□ -0.47
HIF3A-219ENST00000600879 ZBED9Q6R2W3 1325 aa12.1□□□□□ -0.47
HIF3A-219ENST00000600879 CHD9Q3L8U1 2897 aa12.09□□□□□ -0.47
HIF3A-219ENST00000600879 A0A0G2JMZ2 1700 aa12.09□□□□□ -0.47
HIF3A-219ENST00000600879 APBB1O00213 710 aa12.09□□□□□ -0.47
HIF3A-219ENST00000600879 TIMP1P01033 207 aa12.09□□□□□ -0.47
HIF3A-219ENST00000600879 CYP2D6P10635 497 aa12.09□□□□□ -0.47
HIF3A-219ENST00000600879 FCER1AP12319 257 aa12.09□□□□□ -0.47
HIF3A-219ENST00000600879 MYOGP15173 224 aa12.09□□□□□ -0.47
HIF3A-219ENST00000600879 ACLYP53396 1101 aa12.09□□□□□ -0.47
HIF3A-219ENST00000600879 RABGGTBP53611 331 aa12.09□□□□□ -0.47
HIF3A-219ENST00000600879 AKNAD1Q5T1N1 836 aa12.09□□□□□ -0.47
HIF3A-219ENST00000600879 ZNF365Q70YC5 407 aa12.09□□□□□ -0.47
HIF3A-219ENST00000600879 MMP19Q99542 508 aa12.09□□□□□ -0.47
HIF3A-219ENST00000600879 STARD7Q9NQZ5 370 aa12.09□□□□□ -0.47
HIF3A-219ENST00000600879 XIRP2A4UGR9 3374 aa12.09□□□□□ -0.47
HIF3A-219ENST00000600879 DCDC2CA8MYV0 355 aa12.08□□□□□ -0.48
HIF3A-219ENST00000600879 ADAMTS4O75173 837 aa12.08□□□□□ -0.48
HIF3A-219ENST00000600879 CT47B1P0C2W7 299 aaPredicted RBP12.08□□□□□ -0.48
HIF3A-219ENST00000600879 ZNF865P0CJ78 1059 aaPredicted RBP12.08□□□□□ -0.48
HIF3A-219ENST00000600879 TRIM27P14373 513 aa12.08□□□□□ -0.48
HIF3A-219ENST00000600879 TMEM132BQ14DG7 1078 aa12.08□□□□□ -0.48
HIF3A-219ENST00000600879 ABRAQ8N0Z2 381 aa12.08□□□□□ -0.48
HIF3A-219ENST00000600879 DYNLL2Q96FJ2 89 aa12.08□□□□□ -0.48
HIF3A-219ENST00000600879 ZNF512BQ96KM6 892 aaPredicted RBP12.08□□□□□ -0.48
HIF3A-219ENST00000600879 RIOK1Q9BRS2 568 aaKnown RBP12.08□□□□□ -0.48
HIF3A-219ENST00000600879 TINF2Q9BSI4 451 aa12.08□□□□□ -0.48
HIF3A-219ENST00000600879 MCM9Q9NXL9 1143 aa12.08□□□□□ -0.48
HIF3A-219ENST00000600879 TBX21Q9UL17 535 aa12.08□□□□□ -0.48
HIF3A-219ENST00000600879 REV3LO60673 3130 aa12.08□□□□□ -0.48
HIF3A-219ENST00000600879 PLXNA1Q9UIW2 1896 aa12.08□□□□□ -0.48
HIF3A-219ENST00000600879 SYNRGQ9UMZ2 1314 aa12.08□□□□□ -0.48
HIF3A-219ENST00000600879 MAGEB6P1A0A0J9YX57 407 aa12.07□□□□□ -0.48
HIF3A-219ENST00000600879 FAM86C2PA6NEL3 165 aa12.07□□□□□ -0.48
HIF3A-219ENST00000600879 RFXAPO00287 272 aa12.07□□□□□ -0.48
HIF3A-219ENST00000600879 RAD21O60216 631 aa12.07□□□□□ -0.48
HIF3A-219ENST00000600879 BMP1P13497 986 aa12.07□□□□□ -0.48
HIF3A-219ENST00000600879 CYP2C18P33260 490 aa12.07□□□□□ -0.48
HIF3A-219ENST00000600879 GABPAQ06546 454 aa12.07□□□□□ -0.48
HIF3A-219ENST00000600879 POLA2Q14181 598 aa12.07□□□□□ -0.48
HIF3A-219ENST00000600879 SKIV2LQ15477 1246 aaKnown RBP12.07□□□□□ -0.48
HIF3A-219ENST00000600879 KCNA10Q16322 511 aa12.07□□□□□ -0.48
HIF3A-219ENST00000600879 MFSD5Q6N075 450 aa12.07□□□□□ -0.48
HIF3A-219ENST00000600879 ANKRD33Q7Z3H0 272 aa12.07□□□□□ -0.48
HIF3A-219ENST00000600879 MB21D1Q8N884 522 aa12.07□□□□□ -0.48
HIF3A-219ENST00000600879 NAV1Q8NEY1 1877 aa12.07□□□□□ -0.48
HIF3A-219ENST00000600879 SDR42E1Q8WUS8 393 aa12.07□□□□□ -0.48
HIF3A-219ENST00000600879 ARHGAP45Q92619 1136 aa12.07□□□□□ -0.48
HIF3A-219ENST00000600879 EAF2Q96CJ1 260 aaPredicted RBP12.07□□□□□ -0.48
HIF3A-219ENST00000600879 LRFN3Q9BTN0 628 aa12.07□□□□□ -0.48
HIF3A-219ENST00000600879 FBXO28Q9NVF7 368 aa12.07□□□□□ -0.48
HIF3A-219ENST00000600879 TCF20Q9UGU0 1960 aaKnown RBP12.07□□□□□ -0.48
HIF3A-219ENST00000600879 BDP1A6H8Y1 2624 aa12.06□□□□□ -0.48
HIF3A-219ENST00000600879 SMIM22K7EJ46 135 aa12.06□□□□□ -0.48
HIF3A-219ENST00000600879 ADCY6O43306 1168 aa12.06□□□□□ -0.48
HIF3A-219ENST00000600879 AKR1A1P14550 325 aa12.06□□□□□ -0.48
HIF3A-219ENST00000600879 AKR1B1P15121 316 aa12.06□□□□□ -0.48
HIF3A-219ENST00000600879 ICA1Q05084 483 aa12.06□□□□□ -0.48
HIF3A-219ENST00000600879 KCTD2Q14681 263 aa12.06□□□□□ -0.48
HIF3A-219ENST00000600879 ZNF792Q3KQV3 632 aa12.06□□□□□ -0.48
HIF3A-219ENST00000600879 RASIP1Q5U651 963 aa12.06□□□□□ -0.48
HIF3A-219ENST00000600879 KRT40Q6A162 431 aa12.06□□□□□ -0.48
HIF3A-219ENST00000600879 TMEM179Q6ZVK1 233 aa12.06□□□□□ -0.48
HIF3A-219ENST00000600879 CERS3Q8IU89 383 aa12.06□□□□□ -0.48
HIF3A-219ENST00000600879 SIAH1Q8IUQ4 282 aa12.06□□□□□ -0.48
HIF3A-219ENST00000600879 KHSRPQ92945 711 aaKnown RBP eCLIP12.06□□□□□ -0.48
HIF3A-219ENST00000600879 VTI1AQ96AJ9 217 aa12.06□□□□□ -0.48
HIF3A-219ENST00000600879 ZHX1Q9UKY1 873 aaPredicted RBP12.06□□□□□ -0.48
HIF3A-219ENST00000600879 UMODL1Q5DID0 1318 aa12.06□□□□□ -0.48
HIF3A-219ENST00000600879 SMCHD1A6NHR9 2005 aa12.05□□□□□ -0.48
HIF3A-219ENST00000600879 SLC25A27O95847 323 aa12.05□□□□□ -0.48
HIF3A-219ENST00000600879 PTGS1P23219 599 aa12.05□□□□□ -0.48
HIF3A-219ENST00000600879 SLC4A3P48751 1232 aa12.05□□□□□ -0.48
HIF3A-219ENST00000600879 PPIGQ13427 754 aaKnown RBP eCLIP12.05□□□□□ -0.48
HIF3A-219ENST00000600879 OTOP2Q7RTS6 562 aa12.05□□□□□ -0.48
HIF3A-219ENST00000600879 TMEM57Q8N5G2 664 aa12.05□□□□□ -0.48
HIF3A-219ENST00000600879 SSH3Q8TE77 659 aa12.05□□□□□ -0.48
HIF3A-219ENST00000600879 NUP133Q8WUM0 1156 aa12.05□□□□□ -0.48
HIF3A-219ENST00000600879 CRNKL1Q9BZJ0 848 aaKnown RBP12.05□□□□□ -0.48
HIF3A-219ENST00000600879 BCL11AQ9H165 835 aa12.05□□□□□ -0.48
HIF3A-219ENST00000600879 VCPKMTQ9H867 229 aa12.05□□□□□ -0.48
HIF3A-219ENST00000600879 CERS4Q9HA82 394 aa12.05□□□□□ -0.48
HIF3A-219ENST00000600879 ARHGEF10LQ9HCE6 1279 aa12.05□□□□□ -0.48
HIF3A-219ENST00000600879 NRBP1Q9UHY1 535 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms