RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.41□□□□□ -1.22
VRK3-220ENST00000600259 CRNKL1Q9BZJ0 848 aaKnown RBP7.41□□□□□ -1.22
VRK3-220ENST00000600259 TANGO6Q9C0B7 1094 aa7.41□□□□□ -1.22
VRK3-220ENST00000600259 IL1RAPL2Q9NP60 686 aa7.41□□□□□ -1.22
VRK3-220ENST00000600259 FBXO28Q9NVF7 368 aa7.41□□□□□ -1.22
VRK3-220ENST00000600259 PRKAG2Q9UGJ0 569 aa7.41□□□□□ -1.22
VRK3-220ENST00000600259 NRBP1Q9UHY1 535 aa7.41□□□□□ -1.22
VRK3-220ENST00000600259 DIS3Q9Y2L1 958 aaKnown RBP7.41□□□□□ -1.22
VRK3-220ENST00000600259 TACC3Q9Y6A5 838 aa7.41□□□□□ -1.22
VRK3-220ENST00000600259 MYH1P12882 1939 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 CHD9Q3L8U1 2897 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 DNAJC25-GNG10A0A024R161 153 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 CYP2D7A0A087X1C5 515 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 MPHOSPH10O00566 681 aaKnown RBP7.4□□□□□ -1.22
VRK3-220ENST00000600259 WDR46O15213 610 aaKnown RBP7.4□□□□□ -1.22
VRK3-220ENST00000600259 ADAMTS4O75173 837 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 FLOT1O75955 427 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 SLC25A27O95847 323 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 SNAI1O95863 264 aaPredicted RBP7.4□□□□□ -1.22
VRK3-220ENST00000600259 PGK1P00558 417 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 PGK2P07205 417 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 FCER1AP12319 257 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 EEF2P13639 858 aaKnown RBP7.4□□□□□ -1.22
VRK3-220ENST00000600259 FAAP100Q0VG06 881 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 TTF1Q15361 905 aaPredicted RBP7.4□□□□□ -1.22
VRK3-220ENST00000600259 C16orf59Q7L2K0 433 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 ANKRD33Q7Z3H0 272 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 NCAPG2Q86XI2 1143 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 ERC1Q8IUD2 1116 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 SPICE1Q8N0Z3 855 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 KLHDC9Q8NEP7 349 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 CCDC17Q96LX7 622 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 ARMT1Q9H993 441 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 PRDM5Q9NQX1 630 aaPredicted RBP7.4□□□□□ -1.22
VRK3-220ENST00000600259 ATP8A2Q9NTI2 1148 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 SLC5A4Q9NY91 659 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 SWAP70Q9UH65 585 aa7.4□□□□□ -1.22
VRK3-220ENST00000600259 ZNF214Q9UL59 606 aaPredicted RBP7.4□□□□□ -1.22
VRK3-220ENST00000600259 LTBP2Q14767 1821 aa7.4□□□□□ -1.23
VRK3-220ENST00000600259 FRMPD3Q5JV73 1810 aa7.4□□□□□ -1.23
VRK3-220ENST00000600259 ZNF236Q9UL36 1845 aa7.4□□□□□ -1.23
VRK3-220ENST00000600259 SMCHD1A6NHR9 2005 aa7.4□□□□□ -1.23
VRK3-220ENST00000600259 CDH23Q9H251 3354 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 ZBED9Q6R2W3 1325 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 TMEM265A0A087WTH1 108 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 A0A1W2PQ45 241 aaPredicted RBP7.39□□□□□ -1.23
VRK3-220ENST00000600259 A0A1W2PQY0 241 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 USP17L12C9JPN9 530 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 USP17L21D6R901 530 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 GOLIM4O00461 696 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 VWA5AO00534 786 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 CLTBP09497 229 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 ADD2P35612 726 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 STAT3P40763 770 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 CDK7P50613 346 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 IRX5P78411 483 aaPredicted RBP7.39□□□□□ -1.23
VRK3-220ENST00000600259 ICA1Q05084 483 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 PLS1Q14651 629 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 GRIN2CQ14957 1233 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 RASIP1Q5U651 963 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 C16orf86Q6ZW13 317 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 ITPRIPQ8IWB1 547 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 USP38Q8NB14 1042 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 PANK1Q8TE04 598 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 TOX2Q96NM4 488 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 TSEN34Q9BSV6 310 aaKnown RBP7.39□□□□□ -1.23
VRK3-220ENST00000600259 XPNPEP3Q9NQH7 507 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 PRDM6Q9NQX0 595 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 PPP1R9AQ9ULJ8 1098 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 RIPK3Q9Y572 518 aa7.39□□□□□ -1.23
VRK3-220ENST00000600259 A0A0G2JMZ2 1700 aa7.38□□□□□ -1.23
VRK3-220ENST00000600259 ROBO3Q96MS0 1386 aa7.38□□□□□ -1.23
VRK3-220ENST00000600259 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.38□□□□□ -1.23
VRK3-220ENST00000600259 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.38□□□□□ -1.23
VRK3-220ENST00000600259 MBD4O95243 580 aa7.38□□□□□ -1.23
VRK3-220ENST00000600259 RARBP10826 455 aa7.38□□□□□ -1.23
VRK3-220ENST00000600259 ATP5JP18859 108 aa7.38□□□□□ -1.23
VRK3-220ENST00000600259 ACLYP53396 1101 aa7.38□□□□□ -1.23
VRK3-220ENST00000600259 HSP90AB4PQ58FF6 505 aa7.38□□□□□ -1.23
VRK3-220ENST00000600259 CTR9Q6PD62 1173 aa7.38□□□□□ -1.23
VRK3-220ENST00000600259 MAMDC4Q6UXC1 1216 aa7.38□□□□□ -1.23
VRK3-220ENST00000600259 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.38□□□□□ -1.23
VRK3-220ENST00000600259 RNF180Q86T96 592 aa7.38□□□□□ -1.23
VRK3-220ENST00000600259 LENG1Q96BZ8 264 aaPredicted RBP7.38□□□□□ -1.23
VRK3-220ENST00000600259 KIF1BPQ96EK5 621 aa7.38□□□□□ -1.23
VRK3-220ENST00000600259 FGD4Q96M96 766 aa7.38□□□□□ -1.23
VRK3-220ENST00000600259 MMP19Q99542 508 aa7.38□□□□□ -1.23
VRK3-220ENST00000600259 KANSL2Q9H9L4 492 aa7.38□□□□□ -1.23
VRK3-220ENST00000600259 ARHGEF10LQ9HCE6 1279 aa7.38□□□□□ -1.23
VRK3-220ENST00000600259 TBX21Q9UL17 535 aa7.38□□□□□ -1.23
VRK3-220ENST00000600259 MYADML2A6NDP7 307 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 ATP2A1O14983 1001 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 CTAGE5O15320 804 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 ADCY6O43306 1168 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 PQBP1O60828 265 aaKnown RBP7.37□□□□□ -1.23
VRK3-220ENST00000600259 TIMP1P01033 207 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 AKR1A1P14550 325 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 FOSL2P15408 326 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 RAG1P15918 1043 aa7.37□□□□□ -1.23
VRK3-220ENST00000600259 NKX3-2P78367 333 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms