RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 KANSL2Q9H9L4 492 aa12.75□□□□□ -0.37
VRK3-214ENST00000598553 HMX1Q9NP08 348 aaPredicted RBP12.75□□□□□ -0.37
VRK3-214ENST00000598553 LRRC37A2A6NM11 1700 aa12.74□□□□□ -0.37
VRK3-214ENST00000598553 PLIN4Q96Q06 1357 aa12.74□□□□□ -0.37
VRK3-214ENST00000598553 RAD21O60216 631 aa12.74□□□□□ -0.37
VRK3-214ENST00000598553 NMT2O60551 498 aa12.74□□□□□ -0.37
VRK3-214ENST00000598553 NDUFB10O96000 172 aa12.74□□□□□ -0.37
VRK3-214ENST00000598553 TAL1P17542 331 aaPredicted RBP12.74□□□□□ -0.37
VRK3-214ENST00000598553 ADORA2AP29274 412 aa12.74□□□□□ -0.37
VRK3-214ENST00000598553 PPARAQ07869 468 aa12.74□□□□□ -0.37
VRK3-214ENST00000598553 PLS1Q14651 629 aa12.74□□□□□ -0.37
VRK3-214ENST00000598553 HABP4Q5JVS0 413 aaKnown RBP12.74□□□□□ -0.37
VRK3-214ENST00000598553 ANO1Q5XXA6 986 aa12.74□□□□□ -0.37
VRK3-214ENST00000598553 LHX8Q68G74 356 aa12.74□□□□□ -0.37
VRK3-214ENST00000598553 AMOTL1Q8IY63 956 aa12.74□□□□□ -0.37
VRK3-214ENST00000598553 LPAR1Q92633 364 aa12.74□□□□□ -0.37
VRK3-214ENST00000598553 DPF3Q92784 378 aa12.74□□□□□ -0.37
VRK3-214ENST00000598553 GCC1Q96CN9 775 aa12.74□□□□□ -0.37
VRK3-214ENST00000598553 DDRGK1Q96HY6 314 aa12.74□□□□□ -0.37
VRK3-214ENST00000598553 OGDHLQ9ULD0 1010 aa12.74□□□□□ -0.37
VRK3-214ENST00000598553 ADAMTS5Q9UNA0 930 aa12.74□□□□□ -0.37
VRK3-214ENST00000598553 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.74□□□□□ -0.37
VRK3-214ENST00000598553 SUPT16HQ9Y5B9 1047 aaKnown RBP12.74□□□□□ -0.37
VRK3-214ENST00000598553 SLC15A5A6NIM6 579 aa12.73□□□□□ -0.37
VRK3-214ENST00000598553 NMIQ13287 307 aaPredicted RBP12.73□□□□□ -0.37
VRK3-214ENST00000598553 PRAMEF19Q5SWL8 479 aa12.73□□□□□ -0.37
VRK3-214ENST00000598553 PLEKHM2Q8IWE5 1019 aa12.73□□□□□ -0.37
VRK3-214ENST00000598553 CCAR1Q8IX12 1150 aaKnown RBP12.73□□□□□ -0.37
VRK3-214ENST00000598553 NBPF3Q9H094 633 aa12.73□□□□□ -0.37
VRK3-214ENST00000598553 NAPBQ9H115 298 aa12.73□□□□□ -0.37
VRK3-214ENST00000598553 MKNK2Q9HBH9 465 aa12.73□□□□□ -0.37
VRK3-214ENST00000598553 ZNF214Q9UL59 606 aaPredicted RBP12.73□□□□□ -0.37
VRK3-214ENST00000598553 PPP1R9AQ9ULJ8 1098 aa12.73□□□□□ -0.37
VRK3-214ENST00000598553 RIPK3Q9Y572 518 aa12.73□□□□□ -0.37
VRK3-214ENST00000598553 CEP290O15078 2479 aa12.73□□□□□ -0.37
VRK3-214ENST00000598553 LTBP2Q14767 1821 aa12.73□□□□□ -0.37
VRK3-214ENST00000598553 F5H6K3 240 aa12.72□□□□□ -0.37
VRK3-214ENST00000598553 VWA5AO00534 786 aa12.72□□□□□ -0.37
VRK3-214ENST00000598553 HOXC6P09630 235 aa12.72□□□□□ -0.37
VRK3-214ENST00000598553 CYBAP13498 195 aa12.72□□□□□ -0.37
VRK3-214ENST00000598553 GNAT2P19087 354 aa12.72□□□□□ -0.37
VRK3-214ENST00000598553 PDE4AP27815 886 aa12.72□□□□□ -0.37
VRK3-214ENST00000598553 CCNA1P78396 465 aa12.72□□□□□ -0.37
VRK3-214ENST00000598553 KLRC3Q07444 240 aa12.72□□□□□ -0.37
VRK3-214ENST00000598553 CHRDL2Q6WN34 429 aa12.72□□□□□ -0.37
VRK3-214ENST00000598553 NCAPG2Q86XI2 1143 aa12.72□□□□□ -0.37
VRK3-214ENST00000598553 EVI5LQ96CN4 794 aa12.72□□□□□ -0.37
VRK3-214ENST00000598553 IL25Q9H293 177 aa12.72□□□□□ -0.37
VRK3-214ENST00000598553 PRO3102Q9H379 93 aa12.72□□□□□ -0.37
VRK3-214ENST00000598553 CWC22Q9HCG8 908 aaKnown RBP12.72□□□□□ -0.37
VRK3-214ENST00000598553 IL17RBQ9NRM6 502 aa12.72□□□□□ -0.37
VRK3-214ENST00000598553 NYAP2Q9P242 653 aa12.72□□□□□ -0.37
VRK3-214ENST00000598553 CLIP2Q9UDT6 1046 aa12.72□□□□□ -0.37
VRK3-214ENST00000598553 PGK2P07205 417 aa12.71□□□□□ -0.37
VRK3-214ENST00000598553 FXR1P51114 621 aaKnown RBP eCLIP12.71□□□□□ -0.37
VRK3-214ENST00000598553 SHCBP1Q8NEM2 672 aa12.71□□□□□ -0.37
VRK3-214ENST00000598553 NEDD1Q8NHV4 660 aa12.71□□□□□ -0.37
VRK3-214ENST00000598553 SH2D4AQ9H788 454 aa12.71□□□□□ -0.37
VRK3-214ENST00000598553 GOPCQ9HD26 462 aa12.71□□□□□ -0.37
VRK3-214ENST00000598553 MTMR4Q9NYA4 1195 aa12.71□□□□□ -0.37
VRK3-214ENST00000598553 HOXC10Q9NYD6 342 aa12.71□□□□□ -0.37
VRK3-214ENST00000598553 RBM27Q9P2N5 1060 aaKnown RBP12.71□□□□□ -0.37
VRK3-214ENST00000598553 TRIOBPQ9H2D6 2365 aa12.7□□□□□ -0.38
VRK3-214ENST00000598553 HAND2P61296 217 aa12.7□□□□□ -0.38
VRK3-214ENST00000598553 TFAP4Q01664 338 aa12.7□□□□□ -0.38
VRK3-214ENST00000598553 NUCB1Q02818 461 aa12.7□□□□□ -0.38
VRK3-214ENST00000598553 CHD1LQ86WJ1 897 aa12.7□□□□□ -0.38
VRK3-214ENST00000598553 RIOX2Q8IUF8 465 aa12.7□□□□□ -0.38
VRK3-214ENST00000598553 C7orf61Q8IZ16 206 aa12.7□□□□□ -0.38
VRK3-214ENST00000598553 LENG1Q96BZ8 264 aaPredicted RBP12.7□□□□□ -0.38
VRK3-214ENST00000598553 FGD4Q96M96 766 aa12.7□□□□□ -0.38
VRK3-214ENST00000598553 ZMYND8Q9ULU4 1186 aaPredicted RBP12.7□□□□□ -0.38
VRK3-214ENST00000598553 IVNS1ABPQ9Y6Y0 642 aa12.7□□□□□ -0.38
VRK3-214ENST00000598553 COL6A1P12109 1028 aa12.69□□□□□ -0.38
VRK3-214ENST00000598553 SYN1P17600 705 aa12.69□□□□□ -0.38
VRK3-214ENST00000598553 SNAP25P60880 206 aa12.69□□□□□ -0.38
VRK3-214ENST00000598553 LRRC26Q2I0M4 334 aa12.69□□□□□ -0.38
VRK3-214ENST00000598553 NECAB2Q7Z6G3 386 aa12.69□□□□□ -0.38
VRK3-214ENST00000598553 TBC1D10CQ8IV04 446 aa12.69□□□□□ -0.38
VRK3-214ENST00000598553 ZNF444Q8N0Y2 327 aaPredicted RBP12.69□□□□□ -0.38
VRK3-214ENST00000598553 MB21D1Q8N884 522 aa12.69□□□□□ -0.38
VRK3-214ENST00000598553 MKL1Q969V6 931 aa12.69□□□□□ -0.38
VRK3-214ENST00000598553 RILPL2Q969X0 211 aa12.69□□□□□ -0.38
VRK3-214ENST00000598553 MAML3Q96JK9 1138 aa12.69□□□□□ -0.38
VRK3-214ENST00000598553 SLF1Q9BQI6 1058 aa12.69□□□□□ -0.38
VRK3-214ENST00000598553 HTATIP2Q9BUP3 242 aa12.69□□□□□ -0.38
VRK3-214ENST00000598553 C11orf49Q9H6J7 331 aa12.69□□□□□ -0.38
VRK3-214ENST00000598553 RAVER2Q9HCJ3 691 aaKnown RBP12.69□□□□□ -0.38
VRK3-214ENST00000598553 DDX49Q9Y6V7 483 aaKnown RBP12.69□□□□□ -0.38
VRK3-214ENST00000598553 TRIM6-TRIM34B2RNG4 842 aa12.68□□□□□ -0.38
VRK3-214ENST00000598553 FGAP02671 866 aa12.68□□□□□ -0.38
VRK3-214ENST00000598553 TSPY3P0CV98 308 aa12.68□□□□□ -0.38
VRK3-214ENST00000598553 TSPY8P0CW00 308 aa12.68□□□□□ -0.38
VRK3-214ENST00000598553 HSPD1P10809 573 aaKnown RBP12.68□□□□□ -0.38
VRK3-214ENST00000598553 CNGA1P29973 690 aa12.68□□□□□ -0.38
VRK3-214ENST00000598553 STAT3P40763 770 aa12.68□□□□□ -0.38
VRK3-214ENST00000598553 IRX5P78411 483 aaPredicted RBP12.68□□□□□ -0.38
VRK3-214ENST00000598553 MFSD14CQ5VZR4 134 aa12.68□□□□□ -0.38
VRK3-214ENST00000598553 SLFN13Q68D06 897 aa12.68□□□□□ -0.38
VRK3-214ENST00000598553 DPP9Q86TI2 863 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms