RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.97□□□□□ -0.01
UPF1-203ENST00000594504 A0A0G2JMZ2 1700 aa14.97□□□□□ -0.01
UPF1-203ENST00000594504 GSG1L2A8MUP6 293 aa14.96□□□□□ -0.01
UPF1-203ENST00000594504 WDR46O15213 610 aaKnown RBP14.96□□□□□ -0.01
UPF1-203ENST00000594504 MYCNP04198 464 aaPredicted RBP14.96□□□□□ -0.01
UPF1-203ENST00000594504 CENPBP07199 599 aaPredicted RBP14.96□□□□□ -0.01
UPF1-203ENST00000594504 OLFML2BQ68BL8 750 aa14.96□□□□□ -0.01
UPF1-203ENST00000594504 Q7L0L9 218 aa14.96□□□□□ -0.01
UPF1-203ENST00000594504 TDHQ8IZJ6 230 aa14.96□□□□□ -0.01
UPF1-203ENST00000594504 MB21D1Q8N884 522 aa14.96□□□□□ -0.01
UPF1-203ENST00000594504 OSBP2Q969R2 916 aa14.96□□□□□ -0.01
UPF1-203ENST00000594504 DDRGK1Q96HY6 314 aa14.96□□□□□ -0.01
UPF1-203ENST00000594504 MROH8Q9H579 483 aa14.96□□□□□ -0.01
UPF1-203ENST00000594504 KANSL2Q9H9L4 492 aa14.96□□□□□ -0.01
UPF1-203ENST00000594504 TTC41PQ6P2S7 1318 aa14.95□□□□□ -0.02
UPF1-203ENST00000594504 MINDY4BA8MYZ0 360 aa14.95□□□□□ -0.02
UPF1-203ENST00000594504 MSCO60682 206 aa14.95□□□□□ -0.02
UPF1-203ENST00000594504 PGK2P07205 417 aa14.95□□□□□ -0.02
UPF1-203ENST00000594504 FAM83BQ5T0W9 1011 aa14.95□□□□□ -0.02
UPF1-203ENST00000594504 MAML3Q96JK9 1138 aa14.95□□□□□ -0.02
UPF1-203ENST00000594504 NUP88Q99567 741 aaPredicted RBP14.95□□□□□ -0.02
UPF1-203ENST00000594504 SH2D4AQ9H788 454 aa14.95□□□□□ -0.02
UPF1-203ENST00000594504 ADAMTS5Q9UNA0 930 aa14.95□□□□□ -0.02
UPF1-203ENST00000594504 CEP290O15078 2479 aa14.95□□□□□ -0.02
UPF1-203ENST00000594504 DNM1LO00429 736 aa14.94□□□□□ -0.02
UPF1-203ENST00000594504 FCER1AP12319 257 aa14.94□□□□□ -0.02
UPF1-203ENST00000594504 RASA1P20936 1047 aa14.94□□□□□ -0.02
UPF1-203ENST00000594504 RTP1P59025 263 aa14.94□□□□□ -0.02
UPF1-203ENST00000594504 KBTBD3Q8NAB2 608 aa14.94□□□□□ -0.02
UPF1-203ENST00000594504 MMP19Q99542 508 aa14.94□□□□□ -0.02
UPF1-203ENST00000594504 ARPP21Q9UBL0 812 aaPredicted RBP14.94□□□□□ -0.02
UPF1-203ENST00000594504 ZNF236Q9UL36 1845 aa14.94□□□□□ -0.02
UPF1-203ENST00000594504 M0R2C6 588 aa14.93□□□□□ -0.02
UPF1-203ENST00000594504 VWA5AO00534 786 aa14.93□□□□□ -0.02
UPF1-203ENST00000594504 ERC2O15083 957 aa14.93□□□□□ -0.02
UPF1-203ENST00000594504 RNF113AO15541 343 aaKnown RBP14.93□□□□□ -0.02
UPF1-203ENST00000594504 SEPT4O43236 478 aa14.93□□□□□ -0.02
UPF1-203ENST00000594504 MX1P20591 662 aa14.93□□□□□ -0.02
UPF1-203ENST00000594504 STAT3P40763 770 aa14.93□□□□□ -0.02
UPF1-203ENST00000594504 LRIT3Q3SXY7 679 aa14.93□□□□□ -0.02
UPF1-203ENST00000594504 SBK1Q52WX2 424 aa14.93□□□□□ -0.02
UPF1-203ENST00000594504 SLC39A5Q6ZMH5 540 aa14.93□□□□□ -0.02
UPF1-203ENST00000594504 RIOX2Q8IUF8 465 aa14.93□□□□□ -0.02
UPF1-203ENST00000594504 ABRAQ8N0Z2 381 aa14.93□□□□□ -0.02
UPF1-203ENST00000594504 OTUD7AQ8TE49 926 aaPredicted RBP14.93□□□□□ -0.02
UPF1-203ENST00000594504 FERMT2Q96AC1 680 aa14.93□□□□□ -0.02
UPF1-203ENST00000594504 MKNK2Q9HBH9 465 aa14.93□□□□□ -0.02
UPF1-203ENST00000594504 EPB41L4AQ9HCS5 686 aaPredicted RBP14.93□□□□□ -0.02
UPF1-203ENST00000594504 GOPCQ9HD26 462 aa14.93□□□□□ -0.02
UPF1-203ENST00000594504 SLC5A4Q9NY91 659 aa14.93□□□□□ -0.02
UPF1-203ENST00000594504 PPP1R9AQ9ULJ8 1098 aa14.93□□□□□ -0.02
UPF1-203ENST00000594504 ATP11BQ9Y2G3 1177 aa14.93□□□□□ -0.02
UPF1-203ENST00000594504 SMCHD1A6NHR9 2005 aa14.93□□□□□ -0.02
UPF1-203ENST00000594504 SALL3Q9BXA9 1300 aa14.92□□□□□ -0.02
UPF1-203ENST00000594504 PRDM1O75626 825 aa14.92□□□□□ -0.02
UPF1-203ENST00000594504 SLC25A27O95847 323 aa14.92□□□□□ -0.02
UPF1-203ENST00000594504 TAL1P17542 331 aaPredicted RBP14.92□□□□□ -0.02
UPF1-203ENST00000594504 SLC4A3P48751 1232 aa14.92□□□□□ -0.02
UPF1-203ENST00000594504 NUCB1Q02818 461 aa14.92□□□□□ -0.02
UPF1-203ENST00000594504 FAM47AQ5JRC9 791 aa14.92□□□□□ -0.02
UPF1-203ENST00000594504 B4GALNT3Q6L9W6 998 aa14.92□□□□□ -0.02
UPF1-203ENST00000594504 CHD1LQ86WJ1 897 aa14.92□□□□□ -0.02
UPF1-203ENST00000594504 DEFB123Q8N688 67 aa14.92□□□□□ -0.02
UPF1-203ENST00000594504 ARRDC4Q8NCT1 418 aa14.92□□□□□ -0.02
UPF1-203ENST00000594504 REPS2Q8NFH8 660 aa14.92□□□□□ -0.02
UPF1-203ENST00000594504 APPBP2Q92624 585 aa14.92□□□□□ -0.02
UPF1-203ENST00000594504 SEC62Q99442 399 aaKnown RBP14.92□□□□□ -0.02
UPF1-203ENST00000594504 LNPKQ9C0E8 428 aa14.92□□□□□ -0.02
UPF1-203ENST00000594504 CLIP2Q9UDT6 1046 aa14.92□□□□□ -0.02
UPF1-203ENST00000594504 KBTBD13C9JR72 458 aa14.91□□□□□ -0.02
UPF1-203ENST00000594504 F5H6K3 240 aa14.91□□□□□ -0.02
UPF1-203ENST00000594504 GPAA1O43292 621 aa14.91□□□□□ -0.02
UPF1-203ENST00000594504 APPP05067 770 aa14.91□□□□□ -0.02
UPF1-203ENST00000594504 ADCYAP1R1P41586 468 aa14.91□□□□□ -0.02
UPF1-203ENST00000594504 KLRC3Q07444 240 aa14.91□□□□□ -0.02
UPF1-203ENST00000594504 LRRC41Q15345 812 aa14.91□□□□□ -0.02
UPF1-203ENST00000594504 ZNF792Q3KQV3 632 aa14.91□□□□□ -0.02
UPF1-203ENST00000594504 SLC17A8Q8NDX2 589 aa14.91□□□□□ -0.02
UPF1-203ENST00000594504 PI4K2BQ8TCG2 481 aa14.91□□□□□ -0.02
UPF1-203ENST00000594504 ZNF214Q9UL59 606 aaPredicted RBP14.91□□□□□ -0.02
UPF1-203ENST00000594504 RIPK3Q9Y572 518 aa14.91□□□□□ -0.02
UPF1-203ENST00000594504 GREB1LQ9C091 1923 aaPredicted RBP14.91□□□□□ -0.02
UPF1-203ENST00000594504 PLXNA1Q9UIW2 1896 aa14.91□□□□□ -0.02
UPF1-203ENST00000594504 SZT2Q5T011 3432 aa14.91□□□□□ -0.02
UPF1-203ENST00000594504 KCTD2Q14681 263 aa14.9□□□□□ -0.02
UPF1-203ENST00000594504 TRIM60Q495X7 471 aa14.9□□□□□ -0.02
UPF1-203ENST00000594504 SH3RF1Q7Z6J0 888 aa14.9□□□□□ -0.02
UPF1-203ENST00000594504 IFNL3Q8IZI9 196 aa14.9□□□□□ -0.02
UPF1-203ENST00000594504 LBHD1Q9BQE6 289 aaPredicted RBP14.9□□□□□ -0.02
UPF1-203ENST00000594504 NYAP2Q9P242 653 aa14.9□□□□□ -0.02
UPF1-203ENST00000594504 IGKV6D-41A0A0C4DH26 115 aa14.89□□□□□ -0.03
UPF1-203ENST00000594504 PATL2C9JE40 543 aaKnown RBP14.89□□□□□ -0.03
UPF1-203ENST00000594504 NDUFB10O96000 172 aa14.89□□□□□ -0.03
UPF1-203ENST00000594504 PGK1P00558 417 aa14.89□□□□□ -0.03
UPF1-203ENST00000594504 NEFLP07196 543 aa14.89□□□□□ -0.03
UPF1-203ENST00000594504 TDO2P48775 406 aa14.89□□□□□ -0.03
UPF1-203ENST00000594504 PDE1AP54750 535 aa14.89□□□□□ -0.03
UPF1-203ENST00000594504 GIMAP6Q6P9H5 292 aa14.89□□□□□ -0.03
UPF1-203ENST00000594504 ZNF444Q8N0Y2 327 aaPredicted RBP14.89□□□□□ -0.03
UPF1-203ENST00000594504 CPXCR1Q8N123 301 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms