RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 SSH1Q8WYL5 1049 aa13.45□□□□□ -0.26
ZNF540-209ENST00000590588 GLT1D1Q96MS3 346 aa13.45□□□□□ -0.26
ZNF540-209ENST00000590588 TANGO6Q9C0B7 1094 aa13.45□□□□□ -0.26
ZNF540-209ENST00000590588 EHD4Q9H223 541 aa13.45□□□□□ -0.26
ZNF540-209ENST00000590588 COG5Q9UP83 839 aa13.45□□□□□ -0.26
ZNF540-209ENST00000590588 SMCHD1A6NHR9 2005 aa13.45□□□□□ -0.26
ZNF540-209ENST00000590588 CHD9Q3L8U1 2897 aa13.44□□□□□ -0.26
ZNF540-209ENST00000590588 SLC25A27O95847 323 aa13.44□□□□□ -0.26
ZNF540-209ENST00000590588 ZNF865P0CJ78 1059 aaPredicted RBP13.44□□□□□ -0.26
ZNF540-209ENST00000590588 DSG3P32926 999 aa13.44□□□□□ -0.26
ZNF540-209ENST00000590588 TTC6Q86TZ1 520 aa13.44□□□□□ -0.26
ZNF540-209ENST00000590588 KLHDC9Q8NEP7 349 aa13.44□□□□□ -0.26
ZNF540-209ENST00000590588 IL23AQ9NPF7 189 aa13.44□□□□□ -0.26
ZNF540-209ENST00000590588 YBX2Q9Y2T7 364 aaKnown RBP13.44□□□□□ -0.26
ZNF540-209ENST00000590588 TLR3O15455 904 aaKnown RBP13.43□□□□□ -0.26
ZNF540-209ENST00000590588 TAL1P17542 331 aaPredicted RBP13.43□□□□□ -0.26
ZNF540-209ENST00000590588 USP5P45974 858 aa13.43□□□□□ -0.26
ZNF540-209ENST00000590588 DYNLL1P63167 89 aaKnown RBP13.43□□□□□ -0.26
ZNF540-209ENST00000590588 PPP2R2DQ66LE6 453 aa13.43□□□□□ -0.26
ZNF540-209ENST00000590588 CCSAPQ6IQ19 270 aaPredicted RBP13.43□□□□□ -0.26
ZNF540-209ENST00000590588 VTI1AQ96AJ9 217 aa13.43□□□□□ -0.26
ZNF540-209ENST00000590588 MMP19Q99542 508 aa13.43□□□□□ -0.26
ZNF540-209ENST00000590588 PPP1R12CQ9BZL4 782 aa13.43□□□□□ -0.26
ZNF540-209ENST00000590588 FAM184BQ9ULE4 1060 aa13.43□□□□□ -0.26
ZNF540-209ENST00000590588 CNPY2Q9Y2B0 182 aa13.43□□□□□ -0.26
ZNF540-209ENST00000590588 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.43□□□□□ -0.26
ZNF540-209ENST00000590588 ROBO3Q96MS0 1386 aa13.43□□□□□ -0.26
ZNF540-209ENST00000590588 ARVCFO00192 962 aa13.42□□□□□ -0.26
ZNF540-209ENST00000590588 SRGAP3O43295 1099 aa13.42□□□□□ -0.26
ZNF540-209ENST00000590588 GTPBP6O43824 516 aaPredicted RBP13.42□□□□□ -0.26
ZNF540-209ENST00000590588 TLL1O43897 1013 aa13.42□□□□□ -0.26
ZNF540-209ENST00000590588 POU3F3P20264 500 aaPredicted RBP13.42□□□□□ -0.26
ZNF540-209ENST00000590588 GUCY1A2P33402 732 aa13.42□□□□□ -0.26
ZNF540-209ENST00000590588 ZNF792Q3KQV3 632 aa13.42□□□□□ -0.26
ZNF540-209ENST00000590588 CERS3Q8IU89 383 aa13.42□□□□□ -0.26
ZNF540-209ENST00000590588 MIER1Q8N108 512 aa13.42□□□□□ -0.26
ZNF540-209ENST00000590588 PCSK9Q8NBP7 692 aaKnown RBP13.42□□□□□ -0.26
ZNF540-209ENST00000590588 CDCA7LQ96GN5 454 aa13.42□□□□□ -0.26
ZNF540-209ENST00000590588 SNX27Q96L92 541 aa13.42□□□□□ -0.26
ZNF540-209ENST00000590588 C11orf16Q9NQ32 467 aa13.42□□□□□ -0.26
ZNF540-209ENST00000590588 SNRKQ9NRH2 765 aa13.42□□□□□ -0.26
ZNF540-209ENST00000590588 PIEZO1Q92508 2521 aa13.42□□□□□ -0.26
ZNF540-209ENST00000590588 REV3LO60673 3130 aa13.42□□□□□ -0.26
ZNF540-209ENST00000590588 CHD7Q9P2D1 2997 aa13.41□□□□□ -0.26
ZNF540-209ENST00000590588 SYNRGQ9UMZ2 1314 aa13.41□□□□□ -0.26
ZNF540-209ENST00000590588 A0A0U1RQG5 324 aaPredicted RBP13.41□□□□□ -0.26
ZNF540-209ENST00000590588 A0A1W2PRG0 241 aa13.41□□□□□ -0.26
ZNF540-209ENST00000590588 PI4K2BG5E9Z4 385 aa13.41□□□□□ -0.26
ZNF540-209ENST00000590588 SMIM22K7EJ46 135 aa13.41□□□□□ -0.26
ZNF540-209ENST00000590588 FLOT1O75955 427 aa13.41□□□□□ -0.26
ZNF540-209ENST00000590588 PGK2P07205 417 aa13.41□□□□□ -0.26
ZNF540-209ENST00000590588 CYP7A1P22680 504 aa13.41□□□□□ -0.26
ZNF540-209ENST00000590588 KCTD2Q14681 263 aa13.41□□□□□ -0.26
ZNF540-209ENST00000590588 SEPT2Q15019 361 aa13.41□□□□□ -0.26
ZNF540-209ENST00000590588 OTOP2Q7RTS6 562 aa13.41□□□□□ -0.26
ZNF540-209ENST00000590588 MSL3Q8N5Y2 521 aaKnown RBP13.41□□□□□ -0.26
ZNF540-209ENST00000590588 LENG1Q96BZ8 264 aaPredicted RBP13.41□□□□□ -0.26
ZNF540-209ENST00000590588 MRS2Q9HD23 443 aa13.41□□□□□ -0.26
ZNF540-209ENST00000590588 DUSP11O75319 330 aaKnown RBP13.4□□□□□ -0.26
ZNF540-209ENST00000590588 CYP2E1P05181 493 aaPredicted RBP13.4□□□□□ -0.26
ZNF540-209ENST00000590588 ASGR1P07306 291 aa13.4□□□□□ -0.26
ZNF540-209ENST00000590588 CST5P28325 142 aaPredicted RBP13.4□□□□□ -0.26
ZNF540-209ENST00000590588 CYP2C18P33260 490 aa13.4□□□□□ -0.26
ZNF540-209ENST00000590588 SHMT1P34896 483 aa13.4□□□□□ -0.26
ZNF540-209ENST00000590588 RABGGTBP53611 331 aa13.4□□□□□ -0.26
ZNF540-209ENST00000590588 TMEM132BQ14DG7 1078 aa13.4□□□□□ -0.26
ZNF540-209ENST00000590588 ALDH1L2Q3SY69 923 aa13.4□□□□□ -0.26
ZNF540-209ENST00000590588 CCDC158Q5M9N0 1113 aa13.4□□□□□ -0.26
ZNF540-209ENST00000590588 TTC39AQ5SRH9 613 aa13.4□□□□□ -0.26
ZNF540-209ENST00000590588 FAM126BQ8IXS8 530 aa13.4□□□□□ -0.26
ZNF540-209ENST00000590588 ATG4CQ96DT6 458 aa13.4□□□□□ -0.26
ZNF540-209ENST00000590588 SPC25Q9HBM1 224 aa13.4□□□□□ -0.26
ZNF540-209ENST00000590588 PCDHA11Q9Y5I1 949 aa13.4□□□□□ -0.26
ZNF540-209ENST00000590588 MTCH2Q9Y6C9 303 aa13.4□□□□□ -0.26
ZNF540-209ENST00000590588 FAM86C2PA6NEL3 165 aa13.39□□□□□ -0.27
ZNF540-209ENST00000590588 PRR33A8MZF0 331 aa13.39□□□□□ -0.27
ZNF540-209ENST00000590588 CCER2I3L3R5 266 aa13.39□□□□□ -0.27
ZNF540-209ENST00000590588 MPHOSPH10O00566 681 aaKnown RBP13.39□□□□□ -0.27
ZNF540-209ENST00000590588 C6orf222P0C671 652 aaPredicted RBP13.39□□□□□ -0.27
ZNF540-209ENST00000590588 MRE11P49959 708 aa13.39□□□□□ -0.27
ZNF540-209ENST00000590588 PLCD1P51178 756 aa13.39□□□□□ -0.27
ZNF540-209ENST00000590588 G3BP1Q13283 466 aaKnown RBP eCLIP13.39□□□□□ -0.27
ZNF540-209ENST00000590588 RIOX2Q8IUF8 465 aa13.39□□□□□ -0.27
ZNF540-209ENST00000590588 RPUSD2Q8IZ73 545 aaKnown RBP13.39□□□□□ -0.27
ZNF540-209ENST00000590588 KHSRPQ92945 711 aaKnown RBP eCLIP13.39□□□□□ -0.27
ZNF540-209ENST00000590588 HLA-CQ95604 372 aa13.39□□□□□ -0.27
ZNF540-209ENST00000590588 SLC4A7Q9Y6M7 1214 aa13.39□□□□□ -0.27
ZNF540-209ENST00000590588 MYADML2A6NDP7 307 aa13.38□□□□□ -0.27
ZNF540-209ENST00000590588 CD4P01730 458 aa13.38□□□□□ -0.27
ZNF540-209ENST00000590588 MYOGP15173 224 aa13.38□□□□□ -0.27
ZNF540-209ENST00000590588 MTX1Q13505 466 aa13.38□□□□□ -0.27
ZNF540-209ENST00000590588 KIAA1755Q5JYT7 1200 aa13.38□□□□□ -0.27
ZNF540-209ENST00000590588 SAMD1Q6SPF0 538 aaPredicted RBP13.38□□□□□ -0.27
ZNF540-209ENST00000590588 MIGA1Q8NAN2 632 aa13.38□□□□□ -0.27
ZNF540-209ENST00000590588 MEIS3Q99687 375 aa13.38□□□□□ -0.27
ZNF540-209ENST00000590588 ADAMTS5Q9UNA0 930 aa13.38□□□□□ -0.27
ZNF540-209ENST00000590588 FOCADQ5VW36 1801 aa13.38□□□□□ -0.27
ZNF540-209ENST00000590588 MUC6Q6W4X9 2439 aa13.38□□□□□ -0.27
ZNF540-209ENST00000590588 ZNFX1Q9P2E3 1918 aaKnown RBP13.37□□□□□ -0.27
ZNF540-209ENST00000590588 RFXAPO00287 272 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms